RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 TCTEX1D4Q5JR98 221 aa13.84□□□□□ -0.19
UPF1-210ENST00000600689 SS18L2Q9UHA2 77 aa13.84□□□□□ -0.19
UPF1-210ENST00000600689 PIEZO1Q92508 2521 aa13.84□□□□□ -0.19
UPF1-210ENST00000600689 ADARB2-AS1A8MUL3 147 aa13.84□□□□□ -0.19
UPF1-210ENST00000600689 RNF223E7ERA6 249 aa13.84□□□□□ -0.19
UPF1-210ENST00000600689 PPDPFLQ8WWR9 84 aa13.83□□□□□ -0.2
UPF1-210ENST00000600689 COX6B1P14854 86 aa13.83□□□□□ -0.2
UPF1-210ENST00000600689 GNLYP22749 145 aa13.83□□□□□ -0.2
UPF1-210ENST00000600689 HERVK_113P61574 105 aa13.83□□□□□ -0.2
UPF1-210ENST00000600689 TEN1Q86WV5 123 aa13.83□□□□□ -0.2
UPF1-210ENST00000600689 FLNCQ14315 2725 aa13.83□□□□□ -0.2
UPF1-210ENST00000600689 DOPEY2Q9Y3R5 2298 aa13.83□□□□□ -0.2
UPF1-210ENST00000600689 IGHV4-39P01824 125 aa13.82□□□□□ -0.2
UPF1-210ENST00000600689 ANAPC13Q9BS18 74 aa13.82□□□□□ -0.2
UPF1-210ENST00000600689 IGLV4-69A0A075B6H9 119 aa13.82□□□□□ -0.2
UPF1-210ENST00000600689 IGHV4-4A0A075B6R2 117 aa13.81□□□□□ -0.2
UPF1-210ENST00000600689 EDN2P20800 178 aa13.81□□□□□ -0.2
UPF1-210ENST00000600689 LY6EQ16553 131 aa13.81□□□□□ -0.2
UPF1-210ENST00000600689 MUC4Q99102 2169 aa13.81□□□□□ -0.2
UPF1-210ENST00000600689 ZNRF2Q8NHG8 242 aa13.81□□□□□ -0.2
UPF1-210ENST00000600689 ITLN2Q8WWU7 325 aaPredicted RBP13.81□□□□□ -0.2
UPF1-210ENST00000600689 PRORYQ9H606 182 aa13.81□□□□□ -0.2
UPF1-210ENST00000600689 ZNF580Q9UK33 172 aa13.81□□□□□ -0.2
UPF1-210ENST00000600689 RNASE3P12724 160 aaKnown RBP13.8□□□□□ -0.2
UPF1-210ENST00000600689 GPHB5Q86YW7 130 aa13.8□□□□□ -0.2
UPF1-210ENST00000600689 A4D1N5 150 aa13.8□□□□□ -0.2
UPF1-210ENST00000600689 LGALS3P17931 250 aaKnown RBP13.8□□□□□ -0.2
UPF1-210ENST00000600689 UBE2D3P61077 147 aa13.8□□□□□ -0.2
UPF1-210ENST00000600689 NPC2P61916 151 aa13.8□□□□□ -0.2
UPF1-210ENST00000600689 UBE2D2P62837 147 aa13.8□□□□□ -0.2
UPF1-210ENST00000600689 BRD3OSQ6XYD6 125 aa13.8□□□□□ -0.2
UPF1-210ENST00000600689 TRBV20-1A0A075B6N2 111 aa13.79□□□□□ -0.2
UPF1-210ENST00000600689 TRAV12-3A0A0B4J271 114 aa13.79□□□□□ -0.2
UPF1-210ENST00000600689 LINC00477Q96M19 166 aa13.79□□□□□ -0.2
UPF1-210ENST00000600689 BPESC1Q9GZL8 116 aa13.79□□□□□ -0.2
UPF1-210ENST00000600689 SDHAF1A6NFY7 115 aa13.78□□□□□ -0.2
UPF1-210ENST00000600689 ZNF688P0C7X2 276 aa13.78□□□□□ -0.2
UPF1-210ENST00000600689 PMVKQ15126 192 aa13.78□□□□□ -0.2
UPF1-210ENST00000600689 PRO1854Q9UHT4 67 aa13.78□□□□□ -0.2
UPF1-210ENST00000600689 IGHV3-30P01768 117 aa13.78□□□□□ -0.2
UPF1-210ENST00000600689 IGHV3-30-5P0DP03 117 aa13.78□□□□□ -0.2
UPF1-210ENST00000600689 SUMO4Q6EEV6 95 aa13.78□□□□□ -0.2
UPF1-210ENST00000600689 C9orf139Q6ZV77 190 aa13.78□□□□□ -0.2
UPF1-210ENST00000600689 C10orf126Q8N4M7 172 aa13.78□□□□□ -0.2
UPF1-210ENST00000600689 CSPG4Q6UVK1 2322 aa13.78□□□□□ -0.2
UPF1-210ENST00000600689 J3QQQ9 107 aa13.77□□□□□ -0.2
UPF1-210ENST00000600689 SLC25A20O43772 301 aa13.77□□□□□ -0.2
UPF1-210ENST00000600689 EBI3Q14213 229 aa13.77□□□□□ -0.2
UPF1-210ENST00000600689 CUBNO60494 3623 aa13.77□□□□□ -0.2
UPF1-210ENST00000600689 HTN1P15515 57 aa13.77□□□□□ -0.21
UPF1-210ENST00000600689 MINOS1Q5TGZ0 78 aa13.77□□□□□ -0.21
UPF1-210ENST00000600689 MINOS1-NBL1R4GNA1 71 aa13.77□□□□□ -0.21
UPF1-210ENST00000600689 IGSF10Q6WRI0 2623 aa13.77□□□□□ -0.21
UPF1-210ENST00000600689 TRAV12-2A0A075B6T6 113 aa13.77□□□□□ -0.21
UPF1-210ENST00000600689 B5MCH6 92 aa13.77□□□□□ -0.21
UPF1-210ENST00000600689 SIRPDQ9H106 197 aa13.77□□□□□ -0.21
UPF1-210ENST00000600689 TRBV7-1A0A0A6YYK4 115 aa13.76□□□□□ -0.21
UPF1-210ENST00000600689 TRAV41A0A0B4J266 112 aa13.76□□□□□ -0.21
UPF1-210ENST00000600689 PRSS2P07478 247 aa13.76□□□□□ -0.21
UPF1-210ENST00000600689 ELANEP08246 267 aa13.76□□□□□ -0.21
UPF1-210ENST00000600689 ZNF56Q15929 161 aa13.76□□□□□ -0.21
UPF1-210ENST00000600689 LINC01619G3V211 115 aa13.76□□□□□ -0.21
UPF1-210ENST00000600689 RNASE13Q5GAN3 156 aaKnown RBP13.76□□□□□ -0.21
UPF1-210ENST00000600689 LYRM7Q5U5X0 104 aa13.76□□□□□ -0.21
UPF1-210ENST00000600689 ATP6V0E2Q8NHE4 81 aa13.76□□□□□ -0.21
UPF1-210ENST00000600689 NTN5Q8WTR8 489 aaPredicted RBP13.76□□□□□ -0.21
UPF1-210ENST00000600689 FAM159AQ6UWV7 190 aa13.75□□□□□ -0.21
UPF1-210ENST00000600689 TEX29Q8N6K0 151 aa13.75□□□□□ -0.21
UPF1-210ENST00000600689 CENPVL3A0A0U1RRI6 287 aa13.75□□□□□ -0.21
UPF1-210ENST00000600689 PF4V1P10720 104 aa13.75□□□□□ -0.21
UPF1-210ENST00000600689 IGIPA6NJ69 53 aa13.74□□□□□ -0.21
UPF1-210ENST00000600689 ZFAND6Q6FIF0 208 aa13.74□□□□□ -0.21
UPF1-210ENST00000600689 NOTCH3Q9UM47 2321 aa13.74□□□□□ -0.21
UPF1-210ENST00000600689 MUSTN1Q8IVN3 82 aa13.74□□□□□ -0.21
UPF1-210ENST00000600689 MRPL53Q96EL3 112 aaKnown RBP13.74□□□□□ -0.21
UPF1-210ENST00000600689 CACNA1AO00555 2505 aa13.73□□□□□ -0.21
UPF1-210ENST00000600689 AJUBAQ96IF1 538 aa13.73□□□□□ -0.21
UPF1-210ENST00000600689 IGHV3-73A0A0B4J1V6 119 aa13.73□□□□□ -0.21
UPF1-210ENST00000600689 CRLF1O75462 422 aa13.73□□□□□ -0.21
UPF1-210ENST00000600689 LMO4P61968 165 aa13.73□□□□□ -0.21
UPF1-210ENST00000600689 SLC25A29Q8N8R3 303 aa13.73□□□□□ -0.21
UPF1-210ENST00000600689 U3KQE9 123 aa13.73□□□□□ -0.21
UPF1-210ENST00000600689 ABCA2Q9BZC7 2435 aa13.73□□□□□ -0.21
UPF1-210ENST00000600689 OOSP1A8MZH6 123 aa13.72□□□□□ -0.21
UPF1-210ENST00000600689 EIF4EBP3O60516 100 aaPredicted RBP13.72□□□□□ -0.21
UPF1-210ENST00000600689 ERG28Q9UKR5 140 aa13.72□□□□□ -0.21
UPF1-210ENST00000600689 RHPN1-AS1Q9BWJ2 59 aa13.72□□□□□ -0.21
UPF1-210ENST00000600689 KLK9Q9UKQ9 250 aa13.72□□□□□ -0.21
UPF1-210ENST00000600689 C5orf56Q8N8D9 126 aa13.72□□□□□ -0.21
UPF1-210ENST00000600689 SPXQ9BT56 116 aa13.72□□□□□ -0.21
UPF1-210ENST00000600689 TRAV4A0A0B4J268 109 aa13.71□□□□□ -0.21
UPF1-210ENST00000600689 A0A0J9YXV3 536 aa13.71□□□□□ -0.21
UPF1-210ENST00000600689 OVOL1O14753 267 aa13.71□□□□□ -0.21
UPF1-210ENST00000600689 Q6ZSV7 163 aa13.71□□□□□ -0.21
UPF1-210ENST00000600689 USP9XQ93008 2570 aaPredicted RBP13.71□□□□□ -0.21
UPF1-210ENST00000600689 TEX49A0A1B0GTD5 131 aa13.71□□□□□ -0.22
UPF1-210ENST00000600689 VCYO14598 125 aa13.71□□□□□ -0.22
UPF1-210ENST00000600689 UBE2E1P51965 193 aa13.71□□□□□ -0.22
UPF1-210ENST00000600689 LINC00315P59091 139 aa13.7□□□□□ -0.22
UPF1-210ENST00000600689 MDFICQ9P1T7 246 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms