RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 GLYATL3Q5SZD4 288 aa3.19□□□□□ -1.9
VMP1-208ENST00000588617 CASC2Q6XLA1 102 aa3.19□□□□□ -1.9
VMP1-208ENST00000588617 FAM19A2Q8N3H0 131 aa3.19□□□□□ -1.9
VMP1-208ENST00000588617 TPT1P8Q9HAU6 139 aa3.19□□□□□ -1.9
VMP1-208ENST00000588617 PAIP2BQ9ULR5 123 aaKnown RBP3.19□□□□□ -1.9
VMP1-208ENST00000588617 SNURFQ9Y675 71 aa3.19□□□□□ -1.9
VMP1-208ENST00000588617 TRPM7Q96QT4 1865 aa3.19□□□□□ -1.9
VMP1-208ENST00000588617 CASP8AP2Q9UKL3 1982 aa3.18□□□□□ -1.9
VMP1-208ENST00000588617 LOC107984156A0A0G2JMH3 177 aa3.18□□□□□ -1.9
VMP1-208ENST00000588617 J3QR89 54 aa3.18□□□□□ -1.9
VMP1-208ENST00000588617 CCL4P13236 92 aa3.18□□□□□ -1.9
VMP1-208ENST00000588617 PCBD1P61457 104 aa3.18□□□□□ -1.9
VMP1-208ENST00000588617 MIR22HGQ0VDD5 57 aa3.18□□□□□ -1.9
VMP1-208ENST00000588617 FOXI2Q6ZQN5 318 aa3.18□□□□□ -1.9
VMP1-208ENST00000588617 ARL17AQ8IVW1 177 aa3.18□□□□□ -1.9
VMP1-208ENST00000588617 TANC2Q9HCD6 1990 aa3.18□□□□□ -1.9
VMP1-208ENST00000588617 ETV6P41212 452 aa3.17□□□□□ -1.9
VMP1-208ENST00000588617 AKR1D1P51857 326 aa3.17□□□□□ -1.9
VMP1-208ENST00000588617 TMEM91Q6ZNR0 172 aa3.17□□□□□ -1.9
VMP1-208ENST00000588617 VPS25Q9BRG1 176 aa3.17□□□□□ -1.9
VMP1-208ENST00000588617 PLXNA1Q9UIW2 1896 aa3.17□□□□□ -1.9
VMP1-208ENST00000588617 HIVEP2P31629 2446 aa3.17□□□□□ -1.9
VMP1-208ENST00000588617 TRBV6-4A0A1B0GX49 114 aa3.16□□□□□ -1.9
VMP1-208ENST00000588617 APOC4-APOC2K7ER74 178 aa3.16□□□□□ -1.9
VMP1-208ENST00000588617 HCRTO43612 131 aa3.16□□□□□ -1.9
VMP1-208ENST00000588617 APOC2P02655 101 aa3.16□□□□□ -1.9
VMP1-208ENST00000588617 HLA-DRB4P13762 266 aa3.16□□□□□ -1.9
VMP1-208ENST00000588617 COX7CP15954 63 aa3.16□□□□□ -1.9
VMP1-208ENST00000588617 CKS2P33552 79 aa3.16□□□□□ -1.9
VMP1-208ENST00000588617 ZCCHC23Q6ZST2 131 aa3.16□□□□□ -1.9
VMP1-208ENST00000588617 OR10AG1Q8NH19 301 aa3.16□□□□□ -1.9
VMP1-208ENST00000588617 TNFSF18Q9UNG2 199 aa3.16□□□□□ -1.9
VMP1-208ENST00000588617 HLA-DRB4X5D2U9 266 aa3.16□□□□□ -1.9
VMP1-208ENST00000588617 MYOFQ9NZM1 2061 aa3.16□□□□□ -1.9
VMP1-208ENST00000588617 MYH9P35579 1960 aaKnown RBP3.16□□□□□ -1.9
VMP1-208ENST00000588617 PLXNA4Q9HCM2 1894 aa3.16□□□□□ -1.9
VMP1-208ENST00000588617 H3BRM9 83 aa3.15□□□□□ -1.91
VMP1-208ENST00000588617 KDELR1P24390 212 aa3.15□□□□□ -1.91
VMP1-208ENST00000588617 CD52P31358 61 aa3.15□□□□□ -1.91
VMP1-208ENST00000588617 OTOSQ8NHW6 89 aa3.15□□□□□ -1.91
VMP1-208ENST00000588617 COMMD3Q9UBI1 195 aa3.15□□□□□ -1.91
VMP1-208ENST00000588617 MKI67P46013 3256 aaKnown RBP3.15□□□□□ -1.91
VMP1-208ENST00000588617 FAM92AA1XBS5 289 aa3.14□□□□□ -1.91
VMP1-208ENST00000588617 CD14P08571 375 aa3.14□□□□□ -1.91
VMP1-208ENST00000588617 IGLC6P0CF74 106 aa3.14□□□□□ -1.91
VMP1-208ENST00000588617 CIB3Q96Q77 187 aaPredicted RBP3.14□□□□□ -1.91
VMP1-208ENST00000588617 MPC1Q9Y5U8 109 aa3.14□□□□□ -1.91
VMP1-208ENST00000588617 HEATR1Q9H583 2144 aaKnown RBP3.14□□□□□ -1.91
VMP1-208ENST00000588617 KIAA1549Q9HCM3 1950 aa3.14□□□□□ -1.91
VMP1-208ENST00000588617 LAMA2P24043 3122 aaKnown RBP3.13□□□□□ -1.91
VMP1-208ENST00000588617 MCM3APO60318 1980 aa3.13□□□□□ -1.91
VMP1-208ENST00000588617 IGKV3D-7A0A0C4DH55 119 aa3.13□□□□□ -1.91
VMP1-208ENST00000588617 IGKV3OR2-268A0A0C4DH90 116 aa3.13□□□□□ -1.91
VMP1-208ENST00000588617 PNMA8CA0A1B0GUJ8 204 aa3.13□□□□□ -1.91
VMP1-208ENST00000588617 K7ERU9 68 aa3.13□□□□□ -1.91
VMP1-208ENST00000588617 KRTAP12-3P60328 96 aa3.13□□□□□ -1.91
VMP1-208ENST00000588617 MPV17LQ2QL34 196 aa3.13□□□□□ -1.91
VMP1-208ENST00000588617 UNQ6190/PRO20217Q6UXQ8 127 aa3.13□□□□□ -1.91
VMP1-208ENST00000588617 SNRNP25Q9BV90 132 aaKnown RBP3.13□□□□□ -1.91
VMP1-208ENST00000588617 METTL1Q9UBP6 276 aaKnown RBP3.13□□□□□ -1.91
VMP1-208ENST00000588617 CR1P17927 2039 aa3.13□□□□□ -1.91
VMP1-208ENST00000588617 COL4A6Q14031 1691 aa3.12□□□□□ -1.91
VMP1-208ENST00000588617 J3QKU1 62 aa3.12□□□□□ -1.91
VMP1-208ENST00000588617 EDF1O60869 148 aaKnown RBP3.12□□□□□ -1.91
VMP1-208ENST00000588617 FREM3P0C091 2139 aa3.12□□□□□ -1.91
VMP1-208ENST00000588617 TSPAN19P0C672 248 aa3.12□□□□□ -1.91
VMP1-208ENST00000588617 NCS1P62166 190 aa3.12□□□□□ -1.91
VMP1-208ENST00000588617 LCE1CQ5T751 118 aa3.12□□□□□ -1.91
VMP1-208ENST00000588617 LCE1BQ5T7P3 118 aa3.12□□□□□ -1.91
VMP1-208ENST00000588617 CTAGE3PQ8IX95 158 aa3.12□□□□□ -1.91
VMP1-208ENST00000588617 DEFB106AQ8N104 65 aa3.12□□□□□ -1.91
VMP1-208ENST00000588617 C10orf111Q8N326 155 aa3.12□□□□□ -1.91
VMP1-208ENST00000588617 C1orf54Q8WWF1 131 aa3.12□□□□□ -1.91
VMP1-208ENST00000588617 DNAJC15Q9Y5T4 150 aa3.12□□□□□ -1.91
VMP1-208ENST00000588617 FANCMQ8IYD8 2048 aa3.11□□□□□ -1.91
VMP1-208ENST00000588617 CXorf51AA0A1B0GTR3 108 aa3.11□□□□□ -1.91
VMP1-208ENST00000588617 H3BQF6 201 aa3.11□□□□□ -1.91
VMP1-208ENST00000588617 DNAL4O96015 105 aa3.11□□□□□ -1.91
VMP1-208ENST00000588617 CD3DP04234 171 aa3.11□□□□□ -1.91
VMP1-208ENST00000588617 LINC00694P0DN24 101 aa3.11□□□□□ -1.91
VMP1-208ENST00000588617 NCBP2-AS2Q69YL0 99 aa3.11□□□□□ -1.91
VMP1-208ENST00000588617 LPAR5Q9H1C0 372 aa3.11□□□□□ -1.91
VMP1-208ENST00000588617 CYSTM1Q9H1C7 97 aa3.11□□□□□ -1.91
VMP1-208ENST00000588617 SLC35B3Q9H1N7 401 aa3.11□□□□□ -1.91
VMP1-208ENST00000588617 ANK1P16157 1881 aa3.11□□□□□ -1.91
VMP1-208ENST00000588617 INTS1Q8N201 2190 aaKnown RBP3.11□□□□□ -1.91
VMP1-208ENST00000588617 NEDD8Q15843 81 aa3.1□□□□□ -1.91
VMP1-208ENST00000588617 SMIM7Q9BQ49 75 aa3.1□□□□□ -1.91
VMP1-208ENST00000588617 ARFGEF3Q5TH69 2177 aa3.1□□□□□ -1.91
VMP1-208ENST00000588617 BPTFQ12830 3046 aa3.09□□□□□ -1.91
VMP1-208ENST00000588617 CITO14578 2027 aa3.09□□□□□ -1.91
VMP1-208ENST00000588617 IGHV1-24A0A0C4DH33 117 aa3.09□□□□□ -1.91
VMP1-208ENST00000588617 EFCAB10A6NFE3 127 aa3.09□□□□□ -1.91
VMP1-208ENST00000588617 CCL25O15444 150 aa3.09□□□□□ -1.91
VMP1-208ENST00000588617 NUPR1O60356 82 aa3.09□□□□□ -1.91
VMP1-208ENST00000588617 RPS25P62851 125 aaKnown RBP3.09□□□□□ -1.91
VMP1-208ENST00000588617 ASB16-AS1Q495Z4 193 aa3.09□□□□□ -1.91
VMP1-208ENST00000588617 CLLU1Q5K131 121 aa3.09□□□□□ -1.91
VMP1-208ENST00000588617 TSC2P49815 1807 aa3.09□□□□□ -1.92
VMP1-208ENST00000588617 PDCD11Q14690 1871 aaKnown RBP3.09□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms