RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 TMEM136Q6ZRR5 245 aa7.06□□□□□ -1.28
SMCHD1-212ENST00000585229 MRAPQ8TCY5 172 aa7.06□□□□□ -1.28
SMCHD1-212ENST00000585229 SPATA25Q9BR10 227 aa7.06□□□□□ -1.28
SMCHD1-212ENST00000585229 GNB1LQ9BYB4 327 aa7.06□□□□□ -1.28
SMCHD1-212ENST00000585229 C11orf68Q9H3H3 251 aaKnown RBP7.06□□□□□ -1.28
SMCHD1-212ENST00000585229 MSRB1Q9NZV6 116 aa7.06□□□□□ -1.28
SMCHD1-212ENST00000585229 MEGF8Q7Z7M0 2845 aa7.06□□□□□ -1.28
SMCHD1-212ENST00000585229 IGHV4-28A0A0C4DH34 117 aa7.05□□□□□ -1.28
SMCHD1-212ENST00000585229 M0R381 172 aa7.05□□□□□ -1.28
SMCHD1-212ENST00000585229 MT-ND6P03923 174 aa7.05□□□□□ -1.28
SMCHD1-212ENST00000585229 TRGC1P0CF51 173 aa7.05□□□□□ -1.28
SMCHD1-212ENST00000585229 RAB5AP20339 215 aa7.05□□□□□ -1.28
SMCHD1-212ENST00000585229 B9D2Q9BPU9 175 aa7.05□□□□□ -1.28
SMCHD1-212ENST00000585229 TMEM191AQ9H0A3 160 aa7.05□□□□□ -1.28
SMCHD1-212ENST00000585229 RETNQ9HD89 108 aa7.05□□□□□ -1.28
SMCHD1-212ENST00000585229 TIMM8BQ9Y5J9 83 aaPredicted RBP7.05□□□□□ -1.28
SMCHD1-212ENST00000585229 TENM3Q9P273 2699 aa7.05□□□□□ -1.28
SMCHD1-212ENST00000585229 MUC21A0A0G2JKD1 596 aa7.04□□□□□ -1.28
SMCHD1-212ENST00000585229 MUC21A0A140T8X8 626 aa7.04□□□□□ -1.28
SMCHD1-212ENST00000585229 LYRM9A8MSI8 78 aa7.04□□□□□ -1.28
SMCHD1-212ENST00000585229 HLA-DQA1P01909 254 aa7.04□□□□□ -1.28
SMCHD1-212ENST00000585229 TWIST1Q15672 202 aa7.04□□□□□ -1.28
SMCHD1-212ENST00000585229 ZNF876PQ49A33 203 aa7.04□□□□□ -1.28
SMCHD1-212ENST00000585229 DEFB121Q5J5C9 76 aa7.04□□□□□ -1.28
SMCHD1-212ENST00000585229 UFSP1Q6NVU6 142 aa7.04□□□□□ -1.28
SMCHD1-212ENST00000585229 POM121L12Q8N7R1 296 aa7.04□□□□□ -1.28
SMCHD1-212ENST00000585229 C18orf15Q96N68 181 aa7.04□□□□□ -1.28
SMCHD1-212ENST00000585229 AP1S3Q96PC3 154 aa7.04□□□□□ -1.28
SMCHD1-212ENST00000585229 KIF25-AS1Q9Y6Z4 181 aa7.04□□□□□ -1.28
SMCHD1-212ENST00000585229 A8MWV9 139 aa7.03□□□□□ -1.28
SMCHD1-212ENST00000585229 PHOX2AO14813 284 aa7.03□□□□□ -1.28
SMCHD1-212ENST00000585229 RS1O15537 224 aa7.03□□□□□ -1.28
SMCHD1-212ENST00000585229 CAMPP49913 170 aa7.03□□□□□ -1.28
SMCHD1-212ENST00000585229 LINC00315P59091 139 aa7.03□□□□□ -1.28
SMCHD1-212ENST00000585229 LCE4AQ5TA78 99 aa7.03□□□□□ -1.28
SMCHD1-212ENST00000585229 FAM104BQ5XKR9 115 aa7.03□□□□□ -1.28
SMCHD1-212ENST00000585229 Q6ZTI0 123 aa7.03□□□□□ -1.28
SMCHD1-212ENST00000585229 RNF185Q96GF1 192 aa7.03□□□□□ -1.28
SMCHD1-212ENST00000585229 DPH3P1Q9H4G8 78 aa7.03□□□□□ -1.28
SMCHD1-212ENST00000585229 NOP10Q9NPE3 64 aaKnown RBP7.03□□□□□ -1.28
SMCHD1-212ENST00000585229 MRPL16Q9NX20 251 aaKnown RBP7.03□□□□□ -1.28
SMCHD1-212ENST00000585229 DKK2Q9UBU2 259 aa7.03□□□□□ -1.28
SMCHD1-212ENST00000585229 TRGV1A0A0A0MS02 117 aa7.02□□□□□ -1.29
SMCHD1-212ENST00000585229 TRAV4A0A0B4J268 109 aa7.02□□□□□ -1.29
SMCHD1-212ENST00000585229 TEX48A0A1B0GUV7 120 aa7.02□□□□□ -1.29
SMCHD1-212ENST00000585229 CRYGDP07320 174 aa7.02□□□□□ -1.29
SMCHD1-212ENST00000585229 EVI2AP22794 236 aa7.02□□□□□ -1.29
SMCHD1-212ENST00000585229 FRZBQ92765 325 aa7.02□□□□□ -1.29
SMCHD1-212ENST00000585229 PRKDCP78527 4128 aaKnown RBP7.01□□□□□ -1.29
SMCHD1-212ENST00000585229 RHODO00212 210 aa7.01□□□□□ -1.29
SMCHD1-212ENST00000585229 CIDEAO60543 219 aa7.01□□□□□ -1.29
SMCHD1-212ENST00000585229 RPS10P46783 165 aaKnown RBP7.01□□□□□ -1.29
SMCHD1-212ENST00000585229 DEFA6Q01524 100 aa7.01□□□□□ -1.29
SMCHD1-212ENST00000585229 SLAQ13239 276 aa7.01□□□□□ -1.29
SMCHD1-212ENST00000585229 FAM222AQ5U5X8 452 aa7.01□□□□□ -1.29
SMCHD1-212ENST00000585229 CFAP126Q5VTH2 177 aa7.01□□□□□ -1.29
SMCHD1-212ENST00000585229 ZFP2Q6ZN57 461 aa7.01□□□□□ -1.29
SMCHD1-212ENST00000585229 SMIM15Q7Z3B0 74 aa7.01□□□□□ -1.29
SMCHD1-212ENST00000585229 AMN1Q8IY45 258 aa7.01□□□□□ -1.29
SMCHD1-212ENST00000585229 C14orf178Q8N769 122 aaPredicted RBP7.01□□□□□ -1.29
SMCHD1-212ENST00000585229 JPT2Q9H910 190 aa7.01□□□□□ -1.29
SMCHD1-212ENST00000585229 EDA2RQ9HAV5 297 aa7.01□□□□□ -1.29
SMCHD1-212ENST00000585229 NHLRC4P0CG21 123 aaPredicted RBP7□□□□□ -1.29
SMCHD1-212ENST00000585229 RAB4AP20338 218 aa7□□□□□ -1.29
SMCHD1-212ENST00000585229 SAMD10Q9BYL1 202 aa7□□□□□ -1.29
SMCHD1-212ENST00000585229 CELA1Q9UNI1 258 aa7□□□□□ -1.29
SMCHD1-212ENST00000585229 TRAPPC1Q9Y5R8 145 aa7□□□□□ -1.29
SMCHD1-212ENST00000585229 U3KQK5 164 aa7□□□□□ -1.29
SMCHD1-212ENST00000585229 COL7A1Q02388 2944 aa7□□□□□ -1.29
SMCHD1-212ENST00000585229 GAGE12BA1L429 117 aa6.99□□□□□ -1.29
SMCHD1-212ENST00000585229 DEFB4AO15263 64 aa6.99□□□□□ -1.29
SMCHD1-212ENST00000585229 GAGE7O76087 117 aa6.99□□□□□ -1.29
SMCHD1-212ENST00000585229 APCSP02743 223 aa6.99□□□□□ -1.29
SMCHD1-212ENST00000585229 TRGC2P03986 189 aa6.99□□□□□ -1.29
SMCHD1-212ENST00000585229 GAGE12FP0CL80 117 aa6.99□□□□□ -1.29
SMCHD1-212ENST00000585229 GAGE12GP0CL81 117 aa6.99□□□□□ -1.29
SMCHD1-212ENST00000585229 GAGE12IP0CL82 117 aa6.99□□□□□ -1.29
SMCHD1-212ENST00000585229 SPART-AS1P0CW21 52 aa6.99□□□□□ -1.29
SMCHD1-212ENST00000585229 HOXA5P20719 270 aa6.99□□□□□ -1.29
SMCHD1-212ENST00000585229 EMP1P54849 157 aa6.99□□□□□ -1.29
SMCHD1-212ENST00000585229 RAB4BP61018 213 aa6.99□□□□□ -1.29
SMCHD1-212ENST00000585229 SSTP61278 116 aa6.99□□□□□ -1.29
SMCHD1-212ENST00000585229 MRPL51Q4U2R6 128 aaKnown RBP6.99□□□□□ -1.29
SMCHD1-212ENST00000585229 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.99□□□□□ -1.29
SMCHD1-212ENST00000585229 MRAP2Q96G30 205 aa6.99□□□□□ -1.29
SMCHD1-212ENST00000585229 A0A087WWL8 130 aa6.98□□□□□ -1.29
SMCHD1-212ENST00000585229 PPBPP02775 128 aa6.98□□□□□ -1.29
SMCHD1-212ENST00000585229 SMIM17P0DL12 118 aa6.98□□□□□ -1.29
SMCHD1-212ENST00000585229 FABP9Q0Z7S8 132 aa6.98□□□□□ -1.29
SMCHD1-212ENST00000585229 OR4C5Q8NGB2 326 aa6.98□□□□□ -1.29
SMCHD1-212ENST00000585229 TRGV2A0A075B6R0 118 aa6.97□□□□□ -1.29
SMCHD1-212ENST00000585229 A0A0J9YWU9 116 aa6.97□□□□□ -1.29
SMCHD1-212ENST00000585229 IGHV3-53P01767 116 aa6.97□□□□□ -1.29
SMCHD1-212ENST00000585229 GATA1P15976 413 aaPredicted RBP6.97□□□□□ -1.29
SMCHD1-212ENST00000585229 DAD1P61803 113 aa6.97□□□□□ -1.29
SMCHD1-212ENST00000585229 C12orf74Q32Q52 190 aa6.97□□□□□ -1.29
SMCHD1-212ENST00000585229 SUMO4Q6EEV6 95 aa6.97□□□□□ -1.29
SMCHD1-212ENST00000585229 ZNF479Q96JC4 524 aa6.97□□□□□ -1.29
SMCHD1-212ENST00000585229 ALKBH7Q9BT30 221 aaPredicted RBP6.97□□□□□ -1.29
SMCHD1-212ENST00000585229 LAMTOR2Q9Y2Q5 125 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms