RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 TIMM8BQ9Y5J9 83 aaPredicted RBP5.31□□□□□ -1.56
CD44-228ENST00000528455 MUC4Q99102 2169 aa5.31□□□□□ -1.56
CD44-228ENST00000528455 TMSB15BA0A087X1C1 80 aa5.3□□□□□ -1.56
CD44-228ENST00000528455 A0A1B0GW15 77 aa5.3□□□□□ -1.56
CD44-228ENST00000528455 SNURFLB1AK76 121 aa5.3□□□□□ -1.56
CD44-228ENST00000528455 M0R2P5 195 aa5.3□□□□□ -1.56
CD44-228ENST00000528455 PRM2P04554 102 aa5.3□□□□□ -1.56
CD44-228ENST00000528455 GZMBP10144 247 aa5.3□□□□□ -1.56
CD44-228ENST00000528455 BTF3P20290 206 aaKnown RBP5.3□□□□□ -1.56
CD44-228ENST00000528455 NTF3P20783 257 aa5.3□□□□□ -1.56
CD44-228ENST00000528455 TCL1AP56279 114 aa5.3□□□□□ -1.56
CD44-228ENST00000528455 FAM3BP58499 235 aaPredicted RBP5.3□□□□□ -1.56
CD44-228ENST00000528455 CACNG7P62955 275 aa5.3□□□□□ -1.56
CD44-228ENST00000528455 ZNF415Q09FC8 603 aa5.3□□□□□ -1.56
CD44-228ENST00000528455 RASL10AQ92737 203 aa5.3□□□□□ -1.56
CD44-228ENST00000528455 BORCS7Q96B45 105 aa5.3□□□□□ -1.56
CD44-228ENST00000528455 GSN-AS1Q9NRJ2 163 aa5.3□□□□□ -1.56
CD44-228ENST00000528455 PHLDA3Q9Y5J5 127 aa5.3□□□□□ -1.56
CD44-228ENST00000528455 TRBV24-1A0A075B6N3 115 aa5.29□□□□□ -1.56
CD44-228ENST00000528455 A0A1B0GUT8 65 aa5.29□□□□□ -1.56
CD44-228ENST00000528455 PLAC8L1A1L4L8 177 aa5.29□□□□□ -1.56
CD44-228ENST00000528455 LYRM9A8MSI8 78 aa5.29□□□□□ -1.56
CD44-228ENST00000528455 CIDEAO60543 219 aa5.29□□□□□ -1.56
CD44-228ENST00000528455 SPINK4O60575 86 aa5.29□□□□□ -1.56
CD44-228ENST00000528455 CTRLP40313 264 aa5.29□□□□□ -1.56
CD44-228ENST00000528455 RIGQ13278 110 aa5.29□□□□□ -1.56
CD44-228ENST00000528455 ELOBQ15370 118 aa5.29□□□□□ -1.56
CD44-228ENST00000528455 ZNF876PQ49A33 203 aa5.29□□□□□ -1.56
CD44-228ENST00000528455 RASL11AQ6T310 242 aa5.29□□□□□ -1.56
CD44-228ENST00000528455 Q8NAQ8 132 aa5.29□□□□□ -1.56
CD44-228ENST00000528455 SVIPQ8NHG7 77 aa5.29□□□□□ -1.56
CD44-228ENST00000528455 PGLYRP4Q96LB8 373 aa5.29□□□□□ -1.56
CD44-228ENST00000528455 KRTAP4-11Q9BYQ6 195 aa5.29□□□□□ -1.56
CD44-228ENST00000528455 STAB2Q8WWQ8 2551 aa5.29□□□□□ -1.56
CD44-228ENST00000528455 SPART-AS1P0CW21 52 aa5.28□□□□□ -1.56
CD44-228ENST00000528455 TWIST1Q15672 202 aa5.28□□□□□ -1.56
CD44-228ENST00000528455 COX19Q49B96 90 aa5.28□□□□□ -1.56
CD44-228ENST00000528455 SPANXN1Q5VSR9 72 aa5.28□□□□□ -1.56
CD44-228ENST00000528455 ATP5L2Q7Z4Y8 100 aa5.28□□□□□ -1.56
CD44-228ENST00000528455 ZFP82Q8N141 532 aa5.28□□□□□ -1.56
CD44-228ENST00000528455 C18orf15Q96N68 181 aa5.28□□□□□ -1.56
CD44-228ENST00000528455 NOP10Q9NPE3 64 aaKnown RBP5.28□□□□□ -1.56
CD44-228ENST00000528455 KMT2CQ8NEZ4 4911 aaKnown RBP5.28□□□□□ -1.56
CD44-228ENST00000528455 HUWE1Q7Z6Z7 4374 aaKnown RBP5.27□□□□□ -1.57
CD44-228ENST00000528455 IGHV4-28A0A0C4DH34 117 aa5.27□□□□□ -1.57
CD44-228ENST00000528455 TEX48A0A1B0GUV7 120 aa5.27□□□□□ -1.57
CD44-228ENST00000528455 A8MWV9 139 aa5.27□□□□□ -1.57
CD44-228ENST00000528455 C3orf84H3BNL1 204 aa5.27□□□□□ -1.57
CD44-228ENST00000528455 H3BVH4 76 aa5.27□□□□□ -1.57
CD44-228ENST00000528455 NXPH4O95158 308 aa5.27□□□□□ -1.57
CD44-228ENST00000528455 S100A8P05109 93 aa5.27□□□□□ -1.57
CD44-228ENST00000528455 SMIM15Q7Z3B0 74 aa5.27□□□□□ -1.57
CD44-228ENST00000528455 LINC00612Q8N6U2 182 aa5.27□□□□□ -1.57
CD44-228ENST00000528455 GATD1Q8NB37 220 aa5.27□□□□□ -1.57
CD44-228ENST00000528455 FRZBQ92765 325 aa5.27□□□□□ -1.57
CD44-228ENST00000528455 YPEL4Q96NS1 127 aa5.27□□□□□ -1.57
CD44-228ENST00000528455 TPPP3Q9BW30 176 aa5.27□□□□□ -1.57
CD44-228ENST00000528455 GNB1LQ9BYB4 327 aa5.27□□□□□ -1.57
CD44-228ENST00000528455 TMEM191AQ9H0A3 160 aa5.27□□□□□ -1.57
CD44-228ENST00000528455 C11orf68Q9H3H3 251 aaKnown RBP5.27□□□□□ -1.57
CD44-228ENST00000528455 URGCP-MRPS24S4R325 110 aa5.27□□□□□ -1.57
CD44-228ENST00000528455 DNAH7Q8WXX0 4024 aa5.26□□□□□ -1.57
CD44-228ENST00000528455 A0A1B0GXF2 115 aa5.26□□□□□ -1.57
CD44-228ENST00000528455 COLCA2A8K830 154 aa5.26□□□□□ -1.57
CD44-228ENST00000528455 M0R381 172 aa5.26□□□□□ -1.57
CD44-228ENST00000528455 TRGC1P0CF51 173 aa5.26□□□□□ -1.57
CD44-228ENST00000528455 TMEM88Q6PEY1 159 aa5.26□□□□□ -1.57
CD44-228ENST00000528455 ZFP2Q6ZN57 461 aa5.26□□□□□ -1.57
CD44-228ENST00000528455 OR10AG1Q8NH19 301 aa5.26□□□□□ -1.57
CD44-228ENST00000528455 MSRB1Q9NZV6 116 aa5.26□□□□□ -1.57
CD44-228ENST00000528455 KIF25-AS1Q9Y6Z4 181 aa5.26□□□□□ -1.57
CD44-228ENST00000528455 RS1O15537 224 aa5.25□□□□□ -1.57
CD44-228ENST00000528455 CRYGDP07320 174 aa5.25□□□□□ -1.57
CD44-228ENST00000528455 CAMPP49913 170 aa5.25□□□□□ -1.57
CD44-228ENST00000528455 EMP1P54849 157 aa5.25□□□□□ -1.57
CD44-228ENST00000528455 SSTP61278 116 aa5.25□□□□□ -1.57
CD44-228ENST00000528455 HBBP68871 147 aa5.25□□□□□ -1.57
CD44-228ENST00000528455 SLAQ13239 276 aa5.25□□□□□ -1.57
CD44-228ENST00000528455 FAM222AQ5U5X8 452 aa5.25□□□□□ -1.57
CD44-228ENST00000528455 FAM210BQ96KR6 192 aa5.25□□□□□ -1.57
CD44-228ENST00000528455 TRGV2A0A075B6R0 118 aa5.24□□□□□ -1.57
CD44-228ENST00000528455 TRGV1A0A0A0MS02 117 aa5.24□□□□□ -1.57
CD44-228ENST00000528455 TGIF2-C20orf24A0A0A6YYL0 155 aa5.24□□□□□ -1.57
CD44-228ENST00000528455 TRAV4A0A0B4J268 109 aa5.24□□□□□ -1.57
CD44-228ENST00000528455 MUC21A0A0G2JKD1 596 aa5.24□□□□□ -1.57
CD44-228ENST00000528455 MUC21A0A140T8X8 626 aa5.24□□□□□ -1.57
CD44-228ENST00000528455 SCO1O75880 301 aa5.24□□□□□ -1.57
CD44-228ENST00000528455 GAGE7O76087 117 aa5.24□□□□□ -1.57
CD44-228ENST00000528455 MT-ND6P03923 174 aa5.24□□□□□ -1.57
CD44-228ENST00000528455 GAGE12FP0CL80 117 aa5.24□□□□□ -1.57
CD44-228ENST00000528455 GAGE12GP0CL81 117 aa5.24□□□□□ -1.57
CD44-228ENST00000528455 GAGE12IP0CL82 117 aa5.24□□□□□ -1.57
CD44-228ENST00000528455 SMIM17P0DL12 118 aa5.24□□□□□ -1.57
CD44-228ENST00000528455 EVI2AP22794 236 aa5.24□□□□□ -1.57
CD44-228ENST00000528455 LINC00315P59091 139 aa5.24□□□□□ -1.57
CD44-228ENST00000528455 CFAP126Q5VTH2 177 aa5.24□□□□□ -1.57
CD44-228ENST00000528455 FAM104BQ5XKR9 115 aa5.24□□□□□ -1.57
CD44-228ENST00000528455 MRPL54Q6P161 138 aaKnown RBP5.24□□□□□ -1.57
CD44-228ENST00000528455 Q6ZTI0 123 aa5.24□□□□□ -1.57
CD44-228ENST00000528455 CBLN2Q8IUK8 224 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms