RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 LY96Q9Y6Y9 160 aa9.42□□□□□ -0.9
SYNE1-226ENST00000488376 PDE6DO43924 150 aa9.41□□□□□ -0.9
SYNE1-226ENST00000488376 IFNA1P01562 189 aa9.41□□□□□ -0.9
SYNE1-226ENST00000488376 DNAH10OSP0CZ25 163 aa9.41□□□□□ -0.9
SYNE1-226ENST00000488376 TIRAPP58753 221 aa9.41□□□□□ -0.9
SYNE1-226ENST00000488376 SH2D6Q7Z4S9 175 aa9.41□□□□□ -0.9
SYNE1-226ENST00000488376 ZFP82Q8N141 532 aa9.41□□□□□ -0.9
SYNE1-226ENST00000488376 ATP6V0E2Q8NHE4 81 aa9.41□□□□□ -0.9
SYNE1-226ENST00000488376 C19orf71A6NCJ1 209 aa9.4□□□□□ -0.9
SYNE1-226ENST00000488376 SNAI2O43623 268 aa9.4□□□□□ -0.9
SYNE1-226ENST00000488376 CXCL1P09341 107 aa9.4□□□□□ -0.9
SYNE1-226ENST00000488376 MED14OSP0DP75 135 aa9.4□□□□□ -0.9
SYNE1-226ENST00000488376 GNG4P50150 75 aa9.4□□□□□ -0.9
SYNE1-226ENST00000488376 KRTAP10-2P60368 255 aa9.4□□□□□ -0.9
SYNE1-226ENST00000488376 SSBP4Q9BWG4 385 aaPredicted RBP9.4□□□□□ -0.9
SYNE1-226ENST00000488376 RBFOX3A6NFN3 312 aa9.39□□□□□ -0.91
SYNE1-226ENST00000488376 RHODO00212 210 aa9.39□□□□□ -0.91
SYNE1-226ENST00000488376 FUSP35637 526 aaKnown RBP eCLIP9.39□□□□□ -0.91
SYNE1-226ENST00000488376 LYPD6BQ8NI32 183 aa9.39□□□□□ -0.91
SYNE1-226ENST00000488376 GTSF1LQ9H1H1 148 aa9.39□□□□□ -0.91
SYNE1-226ENST00000488376 IGHV3-38A0A0C4DH36 116 aa9.38□□□□□ -0.91
SYNE1-226ENST00000488376 K7EN84 100 aa9.38□□□□□ -0.91
SYNE1-226ENST00000488376 IGHV3-30P01768 117 aa9.38□□□□□ -0.91
SYNE1-226ENST00000488376 IGHV3-33P01772 117 aa9.38□□□□□ -0.91
SYNE1-226ENST00000488376 OR5AL1P0C617 328 aa9.38□□□□□ -0.91
SYNE1-226ENST00000488376 IGHV3-30-3P0DP02 117 aa9.38□□□□□ -0.91
SYNE1-226ENST00000488376 IGHV3-30-5P0DP03 117 aa9.38□□□□□ -0.91
SYNE1-226ENST00000488376 OR10J3Q5JRS4 329 aa9.38□□□□□ -0.91
SYNE1-226ENST00000488376 LELP1Q5T871 98 aa9.38□□□□□ -0.91
SYNE1-226ENST00000488376 SPATA12Q7Z6I5 190 aa9.38□□□□□ -0.91
SYNE1-226ENST00000488376 OR2D3Q8NGH3 330 aa9.38□□□□□ -0.91
SYNE1-226ENST00000488376 DNAH11Q96DT5 4516 aa9.37□□□□□ -0.91
SYNE1-226ENST00000488376 IGLC6P0CF74 106 aa9.37□□□□□ -0.91
SYNE1-226ENST00000488376 EVI2AP22794 236 aa9.37□□□□□ -0.91
SYNE1-226ENST00000488376 BLOC1S1P78537 153 aa9.37□□□□□ -0.91
SYNE1-226ENST00000488376 SPANXN1Q5VSR9 72 aa9.37□□□□□ -0.91
SYNE1-226ENST00000488376 TPPP3Q9BW30 176 aa9.37□□□□□ -0.91
SYNE1-226ENST00000488376 MSRB1Q9NZV6 116 aa9.37□□□□□ -0.91
SYNE1-226ENST00000488376 KIAA1109Q2LD37 5005 aa9.36□□□□□ -0.91
SYNE1-226ENST00000488376 TRAV8-6A0A0B4J262 113 aa9.36□□□□□ -0.91
SYNE1-226ENST00000488376 C16orf90A8MZG2 172 aa9.36□□□□□ -0.91
SYNE1-226ENST00000488376 BTF3P20290 206 aaKnown RBP9.36□□□□□ -0.91
SYNE1-226ENST00000488376 LINC01556Q5JQF7 62 aa9.36□□□□□ -0.91
SYNE1-226ENST00000488376 OCC1Q8TAD7 63 aa9.36□□□□□ -0.91
SYNE1-226ENST00000488376 SMIM12Q96EX1 92 aa9.36□□□□□ -0.91
SYNE1-226ENST00000488376 HERC2O95714 4834 aa9.35□□□□□ -0.91
SYNE1-226ENST00000488376 DYNC1H1Q14204 4646 aaKnown RBP9.35□□□□□ -0.91
SYNE1-226ENST00000488376 TRAV9-2A0A087WT02 112 aa9.35□□□□□ -0.91
SYNE1-226ENST00000488376 P01737 135 aa9.35□□□□□ -0.91
SYNE1-226ENST00000488376 ZNF56Q15929 161 aa9.35□□□□□ -0.91
SYNE1-226ENST00000488376 TOR2AQ5JU69 321 aa9.35□□□□□ -0.91
SYNE1-226ENST00000488376 FER1L6-AS1Q8NA97 138 aa9.35□□□□□ -0.91
SYNE1-226ENST00000488376 NUDT10Q8NFP7 164 aa9.35□□□□□ -0.91
SYNE1-226ENST00000488376 DAZAP1Q96EP5 407 aaKnown RBP9.35□□□□□ -0.91
SYNE1-226ENST00000488376 NUDT11Q96G61 164 aa9.35□□□□□ -0.91
SYNE1-226ENST00000488376 KRTAP17-1Q9BYP8 105 aa9.35□□□□□ -0.91
SYNE1-226ENST00000488376 RNASE7Q9H1E1 156 aaKnown RBP9.35□□□□□ -0.91
SYNE1-226ENST00000488376 KIF25-AS1Q9Y6Z4 181 aa9.35□□□□□ -0.91
SYNE1-226ENST00000488376 TAGLN2P37802 199 aaKnown RBP9.34□□□□□ -0.91
SYNE1-226ENST00000488376 NEXN-AS1Q8NBZ9 246 aa9.34□□□□□ -0.91
SYNE1-226ENST00000488376 CEBPGP53567 150 aa9.33□□□□□ -0.92
SYNE1-226ENST00000488376 RAB4BP61018 213 aa9.33□□□□□ -0.92
SYNE1-226ENST00000488376 UBE2D3P61077 147 aa9.33□□□□□ -0.92
SYNE1-226ENST00000488376 UBE2D2P62837 147 aa9.33□□□□□ -0.92
SYNE1-226ENST00000488376 LYZL1Q6UWQ5 148 aa9.33□□□□□ -0.92
SYNE1-226ENST00000488376 Q9HAA7 133 aa9.33□□□□□ -0.92
SYNE1-226ENST00000488376 IBA57-AS1B1ANH7 110 aa9.32□□□□□ -0.92
SYNE1-226ENST00000488376 TMEM250H0YL14 139 aa9.32□□□□□ -0.92
SYNE1-226ENST00000488376 RPS20P60866 119 aaKnown RBP9.32□□□□□ -0.92
SYNE1-226ENST00000488376 DAZ4Q86SG3 579 aaKnown RBP9.32□□□□□ -0.92
SYNE1-226ENST00000488376 C10orf126Q8N4M7 172 aa9.32□□□□□ -0.92
SYNE1-226ENST00000488376 DNAJC30Q96LL9 226 aa9.32□□□□□ -0.92
SYNE1-226ENST00000488376 DAZ3Q9NR90 486 aaKnown RBP9.32□□□□□ -0.92
SYNE1-226ENST00000488376 TRBV7-3A0A075B6L6 115 aa9.31□□□□□ -0.92
SYNE1-226ENST00000488376 A0A087WTM6 91 aa9.31□□□□□ -0.92
SYNE1-226ENST00000488376 TRBV10-1A0A0K0K1A3 114 aa9.31□□□□□ -0.92
SYNE1-226ENST00000488376 F5H697 171 aa9.31□□□□□ -0.92
SYNE1-226ENST00000488376 K7EP13 123 aa9.31□□□□□ -0.92
SYNE1-226ENST00000488376 MGPP08493 103 aa9.31□□□□□ -0.92
SYNE1-226ENST00000488376 RPL36AP83881 106 aaKnown RBP9.31□□□□□ -0.92
SYNE1-226ENST00000488376 NFE4Q86UQ8 179 aa9.31□□□□□ -0.92
SYNE1-226ENST00000488376 OR10G8Q8NGN5 311 aa9.31□□□□□ -0.92
SYNE1-226ENST00000488376 RPL36ALQ969Q0 106 aaKnown RBP9.31□□□□□ -0.92
SYNE1-226ENST00000488376 FAM210AQ96ND0 272 aa9.31□□□□□ -0.92
SYNE1-226ENST00000488376 AP1S3Q96PC3 154 aa9.31□□□□□ -0.92
SYNE1-226ENST00000488376 EIF5A2Q9GZV4 153 aaKnown RBP9.31□□□□□ -0.92
SYNE1-226ENST00000488376 RPP21Q9H633 154 aaKnown RBP9.31□□□□□ -0.92
SYNE1-226ENST00000488376 ERVFC1-1P60608 527 aa9.3□□□□□ -0.92
SYNE1-226ENST00000488376 GTSF1Q8WW33 167 aa9.3□□□□□ -0.92
SYNE1-226ENST00000488376 A0A087WWC5 75 aa9.29□□□□□ -0.92
SYNE1-226ENST00000488376 SRP19P09132 144 aaKnown RBP9.29□□□□□ -0.92
SYNE1-226ENST00000488376 NTF3P20783 257 aa9.29□□□□□ -0.92
SYNE1-226ENST00000488376 CTRLP40313 264 aa9.29□□□□□ -0.92
SYNE1-226ENST00000488376 SUMO4Q6EEV6 95 aa9.29□□□□□ -0.92
SYNE1-226ENST00000488376 NIT1Q86X76 327 aa9.29□□□□□ -0.92
SYNE1-226ENST00000488376 BIN3Q9NQY0 253 aa9.29□□□□□ -0.92
SYNE1-226ENST00000488376 XKRY2A2RUG3 117 aa9.28□□□□□ -0.92
SYNE1-226ENST00000488376 LRCOL1A6NCL2 159 aa9.28□□□□□ -0.92
SYNE1-226ENST00000488376 C9JQL5 133 aa9.28□□□□□ -0.92
SYNE1-226ENST00000488376 M0QY20 66 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms