RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 NOP16Q9Y3C1 178 aaKnown RBP-0.48□□□□□ -2.49
VPS50-217ENST00000485140 V9GYQ6 96 aa-0.48□□□□□ -2.49
VPS50-217ENST00000485140 ARHGAP31Q2M1Z3 1444 aa-0.48□□□□□ -2.49
VPS50-217ENST00000485140 UHRF1BP1LA0JNW5 1464 aa-0.48□□□□□ -2.49
VPS50-217ENST00000485140 DOPEY1Q5JWR5 2465 aa-0.48□□□□□ -2.49
VPS50-217ENST00000485140 A0A0D9SFI3 127 aa-0.49□□□□□ -2.49
VPS50-217ENST00000485140 TMEM14DPA8MWL7 114 aa-0.49□□□□□ -2.49
VPS50-217ENST00000485140 CCDC179H3BU77 68 aa-0.49□□□□□ -2.49
VPS50-217ENST00000485140 SLC25A6P12236 298 aa-0.49□□□□□ -2.49
VPS50-217ENST00000485140 INSL4Q14641 139 aa-0.49□□□□□ -2.49
VPS50-217ENST00000485140 TMEM91Q6ZNR0 172 aa-0.49□□□□□ -2.49
VPS50-217ENST00000485140 OR8I2Q8N0Y5 310 aa-0.49□□□□□ -2.49
VPS50-217ENST00000485140 ATP6V0E2Q8NHE4 81 aa-0.49□□□□□ -2.49
VPS50-217ENST00000485140 COX7B2Q8TF08 81 aa-0.49□□□□□ -2.49
VPS50-217ENST00000485140 MAGOHBQ96A72 148 aaKnown RBP-0.49□□□□□ -2.49
VPS50-217ENST00000485140 IFI27L1Q96BM0 104 aa-0.49□□□□□ -2.49
VPS50-217ENST00000485140 CENPHQ9H3R5 247 aa-0.49□□□□□ -2.49
VPS50-217ENST00000485140 BATF3Q9NR55 127 aa-0.49□□□□□ -2.49
VPS50-217ENST00000485140 SSC5DA1L4H1 1573 aa-0.49□□□□□ -2.49
VPS50-217ENST00000485140 PLXNA2O75051 1894 aa-0.5□□□□□ -2.49
VPS50-217ENST00000485140 PKDREJQ9NTG1 2253 aa-0.5□□□□□ -2.49
VPS50-217ENST00000485140 A0A087WTM6 91 aa-0.5□□□□□ -2.49
VPS50-217ENST00000485140 DEGS1O15121 323 aa-0.5□□□□□ -2.49
VPS50-217ENST00000485140 PAEPP09466 180 aa-0.5□□□□□ -2.49
VPS50-217ENST00000485140 TFAMQ00059 246 aaKnown RBP-0.5□□□□□ -2.49
VPS50-217ENST00000485140 SKA2Q8WVK7 121 aaPredicted RBP-0.5□□□□□ -2.49
VPS50-217ENST00000485140 OVOS2A0A0G2JMS6 1433 aa-0.5□□□□□ -2.49
VPS50-217ENST00000485140 J3KT08 172 aa-0.51□□□□□ -2.49
VPS50-217ENST00000485140 M0R3E3 92 aa-0.51□□□□□ -2.49
VPS50-217ENST00000485140 HLA-DRB4P13762 266 aa-0.51□□□□□ -2.49
VPS50-217ENST00000485140 S100GP29377 79 aa-0.51□□□□□ -2.49
VPS50-217ENST00000485140 DEFB109BQ30KR1 87 aa-0.51□□□□□ -2.49
VPS50-217ENST00000485140 NHSL1Q5SYE7 1610 aa-0.51□□□□□ -2.49
VPS50-217ENST00000485140 C20orf197Q8N268 126 aa-0.51□□□□□ -2.49
VPS50-217ENST00000485140 Q96NJ1 140 aa-0.51□□□□□ -2.49
VPS50-217ENST00000485140 KIF13AQ9H1H9 1805 aa-0.51□□□□□ -2.49
VPS50-217ENST00000485140 SRRM2Q9UQ35 2752 aaKnown RBP-0.51□□□□□ -2.49
VPS50-217ENST00000485140 HLA-DRB4X5D2U9 266 aa-0.51□□□□□ -2.49
VPS50-217ENST00000485140 KDM5CP41229 1560 aa-0.52□□□□□ -2.49
VPS50-217ENST00000485140 ZNF815PA8K554 130 aa-0.52□□□□□ -2.49
VPS50-217ENST00000485140 J3QLW9 94 aa-0.52□□□□□ -2.49
VPS50-217ENST00000485140 SPINK8P0C7L1 97 aa-0.52□□□□□ -2.49
VPS50-217ENST00000485140 RPS28P62857 69 aaKnown RBP-0.52□□□□□ -2.49
VPS50-217ENST00000485140 WFDC2Q14508 124 aa-0.52□□□□□ -2.49
VPS50-217ENST00000485140 SPCS2Q15005 226 aa-0.52□□□□□ -2.49
VPS50-217ENST00000485140 ATP11AUNQ6ZP68 121 aa-0.52□□□□□ -2.49
VPS50-217ENST00000485140 SSBP3-AS1Q7Z2R9 100 aa-0.52□□□□□ -2.49
VPS50-217ENST00000485140 CNFNQ9BYD5 112 aa-0.52□□□□□ -2.49
VPS50-217ENST00000485140 BANF2Q9H503 90 aa-0.52□□□□□ -2.49
VPS50-217ENST00000485140 PRO0255Q9UI72 69 aa-0.52□□□□□ -2.49
VPS50-217ENST00000485140 DNAJC15Q9Y5T4 150 aa-0.52□□□□□ -2.49
VPS50-217ENST00000485140 PLXNA1Q9UIW2 1896 aa-0.52□□□□□ -2.49
VPS50-217ENST00000485140 SPRR2DP22532 72 aa-0.53□□□□□ -2.49
VPS50-217ENST00000485140 SMPXQ9UHP9 88 aa-0.53□□□□□ -2.49
VPS50-217ENST00000485140 CASZ1Q86V15 1759 aa-0.53□□□□□ -2.49
VPS50-217ENST00000485140 KIAA0100Q14667 2235 aaKnown RBP-0.53□□□□□ -2.49
VPS50-217ENST00000485140 BIVM-ERCC5R4GMW8 1640 aa-0.53□□□□□ -2.49
VPS50-217ENST00000485140 TRGV1A0A0A0MS02 117 aa-0.54□□□□□ -2.5
VPS50-217ENST00000485140 PIN1P1O15428 100 aa-0.54□□□□□ -2.5
VPS50-217ENST00000485140 MT-ND4LP03901 98 aa-0.54□□□□□ -2.5
VPS50-217ENST00000485140 NPC2P61916 151 aa-0.54□□□□□ -2.5
VPS50-217ENST00000485140 PPP1R2P3Q6NXS1 205 aa-0.54□□□□□ -2.5
VPS50-217ENST00000485140 SPANXCQ9NY87 97 aa-0.54□□□□□ -2.5
VPS50-217ENST00000485140 PIEZO2Q9H5I5 2752 aa-0.54□□□□□ -2.5
VPS50-217ENST00000485140 MYH9P35579 1960 aaKnown RBP-0.54□□□□□ -2.5
VPS50-217ENST00000485140 CHD6Q8TD26 2715 aa-0.54□□□□□ -2.5
VPS50-217ENST00000485140 AKAP11Q9UKA4 1901 aa-0.54□□□□□ -2.5
VPS50-217ENST00000485140 RYR3Q15413 4870 aa-0.55□□□□□ -2.5
VPS50-217ENST00000485140 HECTD4Q9Y4D8 3996 aa-0.55□□□□□ -2.5
VPS50-217ENST00000485140 TRAV12-3A0A0B4J271 114 aa-0.55□□□□□ -2.5
VPS50-217ENST00000485140 TRBV10-3A0A0K0K1G6 114 aa-0.55□□□□□ -2.5
VPS50-217ENST00000485140 KRTAP20-2Q3LI61 65 aa-0.55□□□□□ -2.5
VPS50-217ENST00000485140 CLLU1Q5K131 121 aa-0.55□□□□□ -2.5
VPS50-217ENST00000485140 TMEM244Q5VVB8 128 aa-0.55□□□□□ -2.5
VPS50-217ENST00000485140 TCTE3Q8IZS6 198 aa-0.55□□□□□ -2.5
VPS50-217ENST00000485140 PTPRMP28827 1452 aa-0.55□□□□□ -2.5
VPS50-217ENST00000485140 C2CD3Q4AC94 2353 aa-0.56□□□□□ -2.5
VPS50-217ENST00000485140 PHIPQ8WWQ0 1821 aa-0.56□□□□□ -2.5
VPS50-217ENST00000485140 TSTD3H0UI37 97 aa-0.56□□□□□ -2.5
VPS50-217ENST00000485140 FABP1P07148 127 aa-0.56□□□□□ -2.5
VPS50-217ENST00000485140 SCTP09683 121 aa-0.56□□□□□ -2.5
VPS50-217ENST00000485140 CMPK1P30085 196 aa-0.56□□□□□ -2.5
VPS50-217ENST00000485140 Q5VSD8 79 aa-0.56□□□□□ -2.5
VPS50-217ENST00000485140 HSPB11Q9Y547 144 aa-0.56□□□□□ -2.5
VPS50-217ENST00000485140 LAMB1P07942 1786 aa-0.56□□□□□ -2.5
VPS50-217ENST00000485140 VWFP04275 2813 aa-0.56□□□□□ -2.5
VPS50-217ENST00000485140 TENM2Q9NT68 2774 aa-0.57□□□□□ -2.5
VPS50-217ENST00000485140 ALMS1Q8TCU4 4167 aa-0.57□□□□□ -2.5
VPS50-217ENST00000485140 NRXN2Q9P2S2 1712 aa-0.57□□□□□ -2.5
VPS50-217ENST00000485140 TRAV36DV7A0A075B6V5 113 aa-0.57□□□□□ -2.5
VPS50-217ENST00000485140 A0A1B0GX51 115 aa-0.57□□□□□ -2.5
VPS50-217ENST00000485140 M0R2P5 195 aa-0.57□□□□□ -2.5
VPS50-217ENST00000485140 SMIM6P0DI80 62 aa-0.57□□□□□ -2.5
VPS50-217ENST00000485140 KRTAP19-7Q3SYF9 63 aa-0.57□□□□□ -2.5
VPS50-217ENST00000485140 SMIM15Q7Z3B0 74 aa-0.57□□□□□ -2.5
VPS50-217ENST00000485140 DDA1Q9BW61 102 aa-0.57□□□□□ -2.5
VPS50-217ENST00000485140 ARAP1Q96P48 1450 aa-0.57□□□□□ -2.5
VPS50-217ENST00000485140 TNXBP22105 4242 aa-0.57□□□□□ -2.5
VPS50-217ENST00000485140 PBRM1Q86U86 1689 aa-0.58□□□□□ -2.5
VPS50-217ENST00000485140 PARP14Q460N5 1801 aa-0.58□□□□□ -2.5
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms