RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	CFAP54	Q96N23	3096 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	GCN1	Q92616	2671 aa	Known RBP	0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	ARHGEF10	O15013	1369 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	FRYL	O94915	3013 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	ZAN	Q9Y493	2812 aa		0.19	□□□□□ -2.38
PTCD3-209	ENST00000472044	AHCTF1	Q8WYP5	2266 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	CMYA5	Q8N3K9	4069 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	ATR	Q13535	2644 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	UNC79	Q9P2D8	2635 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	ZZEF1	O43149	2961 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	MAPKBP1	O60336	1514 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	FAM135A	Q9P2D6	1515 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	NBEAL2	Q6ZNJ1	2754 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	TEX15	Q9BXT5	2789 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	TENM2	Q9NT68	2774 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	LAMA2	P24043	3122 aa	Known RBP	0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	LYST	Q99698	3801 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	ABCA12	Q86UK0	2595 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	USP9X	Q93008	2570 aa	Predicted RBP	0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	SPTBN4	Q9H254	2564 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	STAB1	Q9NY15	2570 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	CCDC171	Q6TFL3	1326 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	HECTD4	Q9Y4D8	3996 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	FLNC	Q14315	2725 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	HRNR	Q86YZ3	2850 aa	Predicted RBP	0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	BCL9L	Q86UU0	1499 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	PDZD2	O15018	2839 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	PKD1L1	Q8TDX9	2849 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	MXRA5	Q9NR99	2828 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	PIGBOS1	A0A0B4J2F0	54 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	MIF4GD	A9UHW6	222 aa	Known RBP	0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	MCRIP1	C9JLW8	97 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044		H3BQ15	152 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	BCE1	O60756	84 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	TNFSF15	O95150	251 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	IFNG	P01579	166 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	MT-ND4L	P03901	98 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	HMGN1	P05114	100 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	TSPAN19	P0C672	248 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	MPC1L	P0DKB6	136 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	AKR1D1	P51857	326 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	SELENOW	P63302	87 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	ALX1	Q15699	326 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	WHAMMP3	Q1A5X7	153 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	SLC25A26	Q70HW3	274 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	TAC4	Q86UU9	113 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	C4orf33	Q8N1A6	199 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	COPS9	Q8WXC6	57 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	AMELX	Q99217	191 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	SDF2	Q99470	211 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	CGREF1	Q99674	301 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	VPS25	Q9BRG1	176 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	RERGL	Q9H628	205 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	GSKIP	Q9P0R6	139 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	SOGA1	O94964	1423 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	NAIP	Q13075	1403 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	VPS8	Q8N3P4	1428 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	PRG4	Q92954	1404 aa	Predicted RBP	0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	CNTLN	Q9NXG0	1405 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	SPTA1	P02549	2419 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	DCHS2	Q6V1P9	2916 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	CELSR2	Q9HCU4	2923 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	USP9Y	O00507	2555 aa	Predicted RBP	0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	CHD8	Q9HCK8	2581 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	UNC13A	Q9UPW8	1703 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	DMXL2	Q8TDJ6	3036 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	CCNB3	Q8WWL7	1395 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	TMEM2	Q9UHN6	1383 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	CUBN	O60494	3623 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	VPS13C	Q709C8	3753 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	CEP290	O15078	2479 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	PTPN13	Q12923	2485 aa		0.18	□□□□□ -2.38
PTCD3-209	ENST00000472044	TEP1	Q99973	2627 aa	Known RBP	0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	HECTD1	Q9ULT8	2610 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	VIRMA	Q69YN4	1812 aa	Known RBP	0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	KIF13A	Q9H1H9	1805 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	PRUNE2	Q8WUY3	3088 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	LAMA5	O15230	3695 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	HIVEP1	P15822	2718 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	CFAP46	Q8IYW2	2715 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	CCDC18	Q5T9S5	1454 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	MRC2	Q9UBG0	1479 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	NRXN1	Q9ULB1	1477 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	RAPGEF2	Q9Y4G8	1499 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	CELSR1	Q9NYQ6	3014 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	MYO7A	Q13402	2215 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	WNK1	Q9H4A3	2382 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	ITPR3	Q14573	2671 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	CEP350	Q5VT06	3117 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	PVALEF	A0A1B0GWK0	134 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	FHAD1	B1AJZ9	1412 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044		C9JAW5	83 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	CCDC179	H3BU77	68 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	SYNJ1	O43426	1573 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	FLNB	O75369	2602 aa	Known RBP	0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	PYY	P10082	97 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	COX4I1	P13073	169 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	HLA-DRB4	P13762	266 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	HIST1H1D	P16402	221 aa	Known RBP	0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	FGF7	P21781	194 aa		0.17	□□□□□ -2.38

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