RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 LEPP41159 167 aa11.55□□□□□ -0.56
LSM6-201ENST00000296581 KIR3DS1Q14943 382 aa11.55□□□□□ -0.56
LSM6-201ENST00000296581 TMEM97Q5BJF2 176 aa11.55□□□□□ -0.56
LSM6-201ENST00000296581 CNFNQ9BYD5 112 aa11.55□□□□□ -0.56
LSM6-201ENST00000296581 ZNF256Q9Y2P7 627 aaPredicted RBP11.55□□□□□ -0.56
LSM6-201ENST00000296581 SORL1Q92673 2214 aa11.55□□□□□ -0.56
LSM6-201ENST00000296581 RNASE4P34096 147 aaKnown RBP11.55□□□□□ -0.56
LSM6-201ENST00000296581 DEFB131AP59861 70 aa11.55□□□□□ -0.56
LSM6-201ENST00000296581 SHISA2Q6UWI4 295 aa11.55□□□□□ -0.56
LSM6-201ENST00000296581 SPATA25Q9BR10 227 aa11.55□□□□□ -0.56
LSM6-201ENST00000296581 SPCS1Q9Y6A9 102 aa11.55□□□□□ -0.56
LSM6-201ENST00000296581 A8MTW9 85 aa11.54□□□□□ -0.56
LSM6-201ENST00000296581 SYS1-DBNDD2H3BUS1 97 aa11.54□□□□□ -0.56
LSM6-201ENST00000296581 TSPAN13O95857 204 aa11.54□□□□□ -0.56
LSM6-201ENST00000296581 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.54□□□□□ -0.56
LSM6-201ENST00000296581 MAP6D1Q9H9H5 199 aa11.54□□□□□ -0.56
LSM6-201ENST00000296581 ZNF493Q6ZR52 646 aa11.53□□□□□ -0.56
LSM6-201ENST00000296581 TMEM191AQ9H0A3 160 aa11.53□□□□□ -0.56
LSM6-201ENST00000296581 AGRNO00468 2067 aa11.53□□□□□ -0.56
LSM6-201ENST00000296581 A6NDN8 102 aa11.53□□□□□ -0.56
LSM6-201ENST00000296581 HLA-DRB4P13762 266 aa11.53□□□□□ -0.56
LSM6-201ENST00000296581 AMTNQ6UX39 209 aa11.53□□□□□ -0.56
LSM6-201ENST00000296581 HLA-DRB4X5D2U9 266 aa11.53□□□□□ -0.56
LSM6-201ENST00000296581 A0A1W2PPM0 123 aa11.52□□□□□ -0.56
LSM6-201ENST00000296581 PMCHL2Q9BQD1 86 aa11.52□□□□□ -0.57
LSM6-201ENST00000296581 KNCNA6PVL3 124 aa11.51□□□□□ -0.57
LSM6-201ENST00000296581 CYSRT1A8MQ03 144 aa11.51□□□□□ -0.57
LSM6-201ENST00000296581 SNAI2O43623 268 aa11.51□□□□□ -0.57
LSM6-201ENST00000296581 OR5AL1P0C617 328 aa11.51□□□□□ -0.57
LSM6-201ENST00000296581 COX8AP10176 69 aa11.51□□□□□ -0.57
LSM6-201ENST00000296581 MTURNQ8N3F0 131 aa11.51□□□□□ -0.57
LSM6-201ENST00000296581 H3BMM0 161 aa11.51□□□□□ -0.57
LSM6-201ENST00000296581 IGKV3-20P01619 116 aa11.51□□□□□ -0.57
LSM6-201ENST00000296581 IGLV1-51P01701 117 aa11.51□□□□□ -0.57
LSM6-201ENST00000296581 ANXA2RQ3ZCQ2 193 aa11.51□□□□□ -0.57
LSM6-201ENST00000296581 LINC00173Q6ZV60 143 aa11.51□□□□□ -0.57
LSM6-201ENST00000296581 FA2HQ7L5A8 372 aa11.51□□□□□ -0.57
LSM6-201ENST00000296581 PRR31Q5SQ13 230 aa11.5□□□□□ -0.57
LSM6-201ENST00000296581 URB1-AS1Q96HZ7 61 aa11.5□□□□□ -0.57
LSM6-201ENST00000296581 ODF3L2Q3SX64 289 aa11.49□□□□□ -0.57
LSM6-201ENST00000296581 LINC00482Q8N8I6 264 aa11.49□□□□□ -0.57
LSM6-201ENST00000296581 MED14OSP0DP75 135 aa11.49□□□□□ -0.57
LSM6-201ENST00000296581 TWIST1Q15672 202 aa11.49□□□□□ -0.57
LSM6-201ENST00000296581 IGHV4-4A0A075B6R2 117 aa11.48□□□□□ -0.57
LSM6-201ENST00000296581 PF4P02776 101 aa11.48□□□□□ -0.57
LSM6-201ENST00000296581 SPINK13Q1W4C9 94 aa11.48□□□□□ -0.57
LSM6-201ENST00000296581 CITED1Q99966 193 aa11.48□□□□□ -0.57
LSM6-201ENST00000296581 TRAV12-3A0A0B4J271 114 aa11.48□□□□□ -0.57
LSM6-201ENST00000296581 OR11H12B2RN74 326 aa11.48□□□□□ -0.57
LSM6-201ENST00000296581 J3QR89 54 aa11.48□□□□□ -0.57
LSM6-201ENST00000296581 ASIPP42127 132 aa11.48□□□□□ -0.57
LSM6-201ENST00000296581 OR11H2Q8NH07 326 aa11.48□□□□□ -0.57
LSM6-201ENST00000296581 MSRB1Q9NZV6 116 aa11.48□□□□□ -0.57
LSM6-201ENST00000296581 SS18L2Q9UHA2 77 aa11.48□□□□□ -0.57
LSM6-201ENST00000296581 TRAV12-2A0A075B6T6 113 aa11.47□□□□□ -0.57
LSM6-201ENST00000296581 IGHV1-24A0A0C4DH33 117 aa11.47□□□□□ -0.57
LSM6-201ENST00000296581 RBMY1BA6NDE4 496 aaKnown RBP11.47□□□□□ -0.57
LSM6-201ENST00000296581 RBMY1EA6NEQ0 496 aaKnown RBP11.47□□□□□ -0.57
LSM6-201ENST00000296581 H3BVH4 76 aa11.47□□□□□ -0.57
LSM6-201ENST00000296581 RBMY1DP0C7P1 496 aaKnown RBP11.47□□□□□ -0.57
LSM6-201ENST00000296581 FABP2P12104 132 aa11.47□□□□□ -0.57
LSM6-201ENST00000296581 CACNG7P62955 275 aa11.47□□□□□ -0.57
LSM6-201ENST00000296581 FAM104BQ5XKR9 115 aa11.47□□□□□ -0.57
LSM6-201ENST00000296581 RAB37Q96AX2 223 aa11.47□□□□□ -0.57
LSM6-201ENST00000296581 LEPROTL1O95214 131 aa11.47□□□□□ -0.57
LSM6-201ENST00000296581 MRPL16Q9NX20 251 aaKnown RBP11.47□□□□□ -0.57
LSM6-201ENST00000296581 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.46□□□□□ -0.57
LSM6-201ENST00000296581 GNRH2O43555 120 aa11.46□□□□□ -0.57
LSM6-201ENST00000296581 FAM159AQ6UWV7 190 aa11.46□□□□□ -0.57
LSM6-201ENST00000296581 CMC4P56277 68 aaPredicted RBP11.46□□□□□ -0.58
LSM6-201ENST00000296581 SPANXB1Q9NS25 103 aaPredicted RBP11.46□□□□□ -0.58
LSM6-201ENST00000296581 RNASE3P12724 160 aaKnown RBP11.45□□□□□ -0.58
LSM6-201ENST00000296581 S100A4P26447 101 aaKnown RBP11.45□□□□□ -0.58
LSM6-201ENST00000296581 AMN1Q8IY45 258 aa11.45□□□□□ -0.58
LSM6-201ENST00000296581 MCRIP2Q9BUT9 160 aaKnown RBP11.45□□□□□ -0.58
LSM6-201ENST00000296581 FGF6P10767 208 aa11.44□□□□□ -0.58
LSM6-201ENST00000296581 BEAN1Q3B7T3 259 aa11.44□□□□□ -0.58
LSM6-201ENST00000296581 FAM110AQ9BQ89 295 aa11.44□□□□□ -0.58
LSM6-201ENST00000296581 U3KQK5 164 aa11.44□□□□□ -0.58
LSM6-201ENST00000296581 SPANXN1Q5VSR9 72 aa11.44□□□□□ -0.58
LSM6-201ENST00000296581 MAP1LC3CQ9BXW4 147 aa11.44□□□□□ -0.58
LSM6-201ENST00000296581 IGHV1OR15-1A0A075B7D0 117 aa11.43□□□□□ -0.58
LSM6-201ENST00000296581 CHCHD1Q96BP2 118 aaKnown RBP11.43□□□□□ -0.58
LSM6-201ENST00000296581 FXYD7P58549 80 aa11.43□□□□□ -0.58
LSM6-201ENST00000296581 MRPL51Q4U2R6 128 aaKnown RBP11.43□□□□□ -0.58
LSM6-201ENST00000296581 SAMD5Q5TGI4 173 aa11.43□□□□□ -0.58
LSM6-201ENST00000296581 RNF185Q96GF1 192 aa11.43□□□□□ -0.58
LSM6-201ENST00000296581 RBMY1A1P0DJD3 496 aaKnown RBP11.42□□□□□ -0.58
LSM6-201ENST00000296581 RBMY1CP0DJD4 496 aa11.42□□□□□ -0.58
LSM6-201ENST00000296581 RBMY1FQ15415 496 aaKnown RBP11.42□□□□□ -0.58
LSM6-201ENST00000296581 TIMM8BQ9Y5J9 83 aaPredicted RBP11.42□□□□□ -0.58
LSM6-201ENST00000296581 NXPH4O95158 308 aa11.42□□□□□ -0.58
LSM6-201ENST00000296581 CD7P09564 240 aa11.42□□□□□ -0.58
LSM6-201ENST00000296581 HERV-K104P63124 156 aa11.42□□□□□ -0.58
LSM6-201ENST00000296581 LINC01545Q5VT33 79 aa11.42□□□□□ -0.58
LSM6-201ENST00000296581 TRPT1Q86TN4 253 aaKnown RBP11.42□□□□□ -0.58
LSM6-201ENST00000296581 PHLDA3Q9Y5J5 127 aa11.42□□□□□ -0.58
LSM6-201ENST00000296581 JMJD1CQ15652 2540 aa11.42□□□□□ -0.58
LSM6-201ENST00000296581 IGHV3-16A0A0C4DH30 117 aa11.41□□□□□ -0.58
LSM6-201ENST00000296581 H0Y8G0 127 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 174.3 ms