RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 A0A087WWC5 75 aa6.78□□□□□ -1.32
TRIM28-208ENST00000597172 IGHV3-16A0A0C4DH30 117 aa6.78□□□□□ -1.32
TRIM28-208ENST00000597172 CT83Q5H943 113 aa6.78□□□□□ -1.32
TRIM28-208ENST00000597172 DNLZQ5SXM8 178 aa6.78□□□□□ -1.32
TRIM28-208ENST00000597172 GTSF1Q8WW33 167 aa6.78□□□□□ -1.32
TRIM28-208ENST00000597172 KCNS1Q96KK3 526 aa6.78□□□□□ -1.32
TRIM28-208ENST00000597172 OVOL2Q9BRP0 275 aa6.78□□□□□ -1.32
TRIM28-208ENST00000597172 TMEM208Q9BTX3 173 aa6.78□□□□□ -1.32
TRIM28-208ENST00000597172 CTDSP1Q9GZU7 261 aa6.78□□□□□ -1.32
TRIM28-208ENST00000597172 TMEM242Q9NWH2 141 aa6.78□□□□□ -1.32
TRIM28-208ENST00000597172 MDFICQ9P1T7 246 aa6.78□□□□□ -1.32
TRIM28-208ENST00000597172 SMIM27A0A1W2PRY6 76 aa6.77□□□□□ -1.33
TRIM28-208ENST00000597172 A8MWL6 223 aa6.77□□□□□ -1.33
TRIM28-208ENST00000597172 PPP1R2P9O14990 202 aa6.77□□□□□ -1.33
TRIM28-208ENST00000597172 SPRY2O43597 315 aa6.77□□□□□ -1.33
TRIM28-208ENST00000597172 IGLC6P0CF74 106 aa6.77□□□□□ -1.33
TRIM28-208ENST00000597172 RNASE3P12724 160 aaKnown RBP6.77□□□□□ -1.33
TRIM28-208ENST00000597172 FOXA3P55318 350 aaPredicted RBP6.77□□□□□ -1.33
TRIM28-208ENST00000597172 RPS20P60866 119 aaKnown RBP6.77□□□□□ -1.33
TRIM28-208ENST00000597172 C11orf72Q8NBR9 251 aa6.77□□□□□ -1.33
TRIM28-208ENST00000597172 OR11H2Q8NH07 326 aa6.77□□□□□ -1.33
TRIM28-208ENST00000597172 TSKUQ8WUA8 353 aa6.77□□□□□ -1.33
TRIM28-208ENST00000597172 NEU1Q99519 415 aa6.77□□□□□ -1.33
TRIM28-208ENST00000597172 SSBP4Q9BWG4 385 aaPredicted RBP6.77□□□□□ -1.33
TRIM28-208ENST00000597172 RETNQ9HD89 108 aa6.77□□□□□ -1.33
TRIM28-208ENST00000597172 IL36BQ9NZH7 164 aa6.77□□□□□ -1.33
TRIM28-208ENST00000597172 PLAC8L1A1L4L8 177 aa6.76□□□□□ -1.33
TRIM28-208ENST00000597172 CBY3A6NI87 242 aa6.76□□□□□ -1.33
TRIM28-208ENST00000597172 CXCL1P09341 107 aa6.76□□□□□ -1.33
TRIM28-208ENST00000597172 TCL1AP56279 114 aa6.76□□□□□ -1.33
TRIM28-208ENST00000597172 FAM3BP58499 235 aaPredicted RBP6.76□□□□□ -1.33
TRIM28-208ENST00000597172 RNASE8Q8TDE3 154 aaKnown RBP6.76□□□□□ -1.33
TRIM28-208ENST00000597172 SCRT2Q9NQ03 307 aa6.76□□□□□ -1.33
TRIM28-208ENST00000597172 GSN-AS1Q9NRJ2 163 aa6.76□□□□□ -1.33
TRIM28-208ENST00000597172 TP53TG1Q9Y2A0 90 aa6.76□□□□□ -1.33
TRIM28-208ENST00000597172 TRGV11A0A075B6L2 103 aa6.75□□□□□ -1.33
TRIM28-208ENST00000597172 XKRY2A2RUG3 117 aa6.75□□□□□ -1.33
TRIM28-208ENST00000597172 FAM231BA6NCW3 169 aa6.75□□□□□ -1.33
TRIM28-208ENST00000597172 SMIM9A6NGZ8 99 aa6.75□□□□□ -1.33
TRIM28-208ENST00000597172 H3BVH4 76 aa6.75□□□□□ -1.33
TRIM28-208ENST00000597172 SNAI2O43623 268 aa6.75□□□□□ -1.33
TRIM28-208ENST00000597172 SCO1O75880 301 aa6.75□□□□□ -1.33
TRIM28-208ENST00000597172 ARMS2P0C7Q2 107 aa6.75□□□□□ -1.33
TRIM28-208ENST00000597172 ASIPP42127 132 aa6.75□□□□□ -1.33
TRIM28-208ENST00000597172 RRN3P1Q2M238 152 aa6.75□□□□□ -1.33
TRIM28-208ENST00000597172 LYZL1Q6UWQ5 148 aa6.75□□□□□ -1.33
TRIM28-208ENST00000597172 NUP35Q8NFH5 326 aa6.75□□□□□ -1.33
TRIM28-208ENST00000597172 C9orf85Q96MD7 179 aa6.75□□□□□ -1.33
TRIM28-208ENST00000597172 IMMP2LQ96T52 175 aa6.75□□□□□ -1.33
TRIM28-208ENST00000597172 GFRA4Q9GZZ7 299 aa6.75□□□□□ -1.33
TRIM28-208ENST00000597172 MUC21A0A0G2JKD1 596 aa6.74□□□□□ -1.33
TRIM28-208ENST00000597172 MUC21A0A140T8X8 626 aa6.74□□□□□ -1.33
TRIM28-208ENST00000597172 HIGD1CA8MV81 97 aa6.74□□□□□ -1.33
TRIM28-208ENST00000597172 OR5AL1P0C617 328 aa6.74□□□□□ -1.33
TRIM28-208ENST00000597172 ZNF493Q6ZR52 646 aa6.74□□□□□ -1.33
TRIM28-208ENST00000597172 FER1L6-AS1Q8NA97 138 aa6.74□□□□□ -1.33
TRIM28-208ENST00000597172 Q8NAQ8 132 aa6.74□□□□□ -1.33
TRIM28-208ENST00000597172 TMEM263Q8WUH6 116 aaKnown RBP6.74□□□□□ -1.33
TRIM28-208ENST00000597172 PGLYRP4Q96LB8 373 aa6.74□□□□□ -1.33
TRIM28-208ENST00000597172 NAT8BQ9UHF3 227 aa6.74□□□□□ -1.33
TRIM28-208ENST00000597172 TIMM8BQ9Y5J9 83 aaPredicted RBP6.74□□□□□ -1.33
TRIM28-208ENST00000597172 IGHV4-28A0A0C4DH34 117 aa6.73□□□□□ -1.33
TRIM28-208ENST00000597172 A0A1W2PPQ1 181 aa6.73□□□□□ -1.33
TRIM28-208ENST00000597172 CXorf65A6NEN9 183 aa6.73□□□□□ -1.33
TRIM28-208ENST00000597172 F2Z2F3 143 aa6.73□□□□□ -1.33
TRIM28-208ENST00000597172 MIFP14174 115 aa6.73□□□□□ -1.33
TRIM28-208ENST00000597172 S100A4P26447 101 aaKnown RBP6.73□□□□□ -1.33
TRIM28-208ENST00000597172 CTRLP40313 264 aa6.73□□□□□ -1.33
TRIM28-208ENST00000597172 TMEM88Q6PEY1 159 aa6.73□□□□□ -1.33
TRIM28-208ENST00000597172 CBLN2Q8IUK8 224 aa6.73□□□□□ -1.33
TRIM28-208ENST00000597172 C16orf74Q96GX8 76 aa6.73□□□□□ -1.33
TRIM28-208ENST00000597172 YPEL4Q96NS1 127 aa6.73□□□□□ -1.33
TRIM28-208ENST00000597172 TPPP3Q9BW30 176 aa6.73□□□□□ -1.33
TRIM28-208ENST00000597172 URGCP-MRPS24S4R325 110 aa6.73□□□□□ -1.33
TRIM28-208ENST00000597172 PKD1P98161 4303 aa6.73□□□□□ -1.33
TRIM28-208ENST00000597172 IGHV4-4A0A075B6R2 117 aa6.72□□□□□ -1.33
TRIM28-208ENST00000597172 A0A1B0GVY2 172 aa6.72□□□□□ -1.33
TRIM28-208ENST00000597172 DEFB4AO15263 64 aa6.72□□□□□ -1.33
TRIM28-208ENST00000597172 SPINK4O60575 86 aa6.72□□□□□ -1.33
TRIM28-208ENST00000597172 SSTP61278 116 aa6.72□□□□□ -1.33
TRIM28-208ENST00000597172 ZNF415Q09FC8 603 aa6.72□□□□□ -1.33
TRIM28-208ENST00000597172 DAZ2Q13117 558 aaKnown RBP6.72□□□□□ -1.33
TRIM28-208ENST00000597172 ELOBQ15370 118 aa6.72□□□□□ -1.33
TRIM28-208ENST00000597172 DMRTA1Q5VZB9 504 aa6.72□□□□□ -1.33
TRIM28-208ENST00000597172 WDR73Q6P4I2 378 aa6.72□□□□□ -1.33
TRIM28-208ENST00000597172 OR10AG1Q8NH19 301 aa6.72□□□□□ -1.33
TRIM28-208ENST00000597172 SPXQ9BT56 116 aa6.72□□□□□ -1.33
TRIM28-208ENST00000597172 CNFNQ9BYD5 112 aa6.72□□□□□ -1.33
TRIM28-208ENST00000597172 SMCO4Q9NRQ5 59 aa6.72□□□□□ -1.33
TRIM28-208ENST00000597172 MSRB1Q9NZV6 116 aa6.72□□□□□ -1.33
TRIM28-208ENST00000597172 NXPH4O95158 308 aa6.71□□□□□ -1.34
TRIM28-208ENST00000597172 NTF3P20783 257 aa6.71□□□□□ -1.34
TRIM28-208ENST00000597172 EMP1P54849 157 aa6.71□□□□□ -1.34
TRIM28-208ENST00000597172 PTH2Q96A98 100 aa6.71□□□□□ -1.34
TRIM28-208ENST00000597172 NOP10Q9NPE3 64 aaKnown RBP6.71□□□□□ -1.34
TRIM28-208ENST00000597172 PHLDA3Q9Y5J5 127 aa6.71□□□□□ -1.34
TRIM28-208ENST00000597172 APOBP04114 4563 aaKnown RBP6.71□□□□□ -1.34
TRIM28-208ENST00000597172 TGIF2-C20orf24A0A0A6YYL0 155 aa6.7□□□□□ -1.34
TRIM28-208ENST00000597172 A0A1B0GUT8 65 aa6.7□□□□□ -1.34
TRIM28-208ENST00000597172 A0A1B0GXF2 115 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms