RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 COX19Q49B96 90 aa4.68□□□□□ -1.66
VPS53-209ENST00000570771 DNLZQ5SXM8 178 aa4.68□□□□□ -1.66
VPS53-209ENST00000570771 ZNF493Q6ZR52 646 aa4.68□□□□□ -1.66
VPS53-209ENST00000570771 Q6ZWC4 215 aa4.68□□□□□ -1.66
VPS53-209ENST00000570771 FER1L6-AS1Q8NA97 138 aa4.68□□□□□ -1.66
VPS53-209ENST00000570771 SACSQ9NZJ4 4579 aa4.67□□□□□ -1.66
VPS53-209ENST00000570771 IGHV3OR16-12A0A075B7B8 117 aa4.67□□□□□ -1.66
VPS53-209ENST00000570771 TMSB15BA0A087X1C1 80 aa4.67□□□□□ -1.66
VPS53-209ENST00000570771 A0A1B0GW15 77 aa4.67□□□□□ -1.66
VPS53-209ENST00000570771 HIGD1CA8MV81 97 aa4.67□□□□□ -1.66
VPS53-209ENST00000570771 FOXA3P55318 350 aaPredicted RBP4.67□□□□□ -1.66
VPS53-209ENST00000570771 CACNG7P62955 275 aa4.67□□□□□ -1.66
VPS53-209ENST00000570771 RIGQ13278 110 aa4.67□□□□□ -1.66
VPS53-209ENST00000570771 RRN3P1Q2M238 152 aa4.67□□□□□ -1.66
VPS53-209ENST00000570771 MUC21Q5SSG8 566 aa4.67□□□□□ -1.66
VPS53-209ENST00000570771 WDR73Q6P4I2 378 aa4.67□□□□□ -1.66
VPS53-209ENST00000570771 ATRAIDQ6UW56 229 aa4.67□□□□□ -1.66
VPS53-209ENST00000570771 ATP5L2Q7Z4Y8 100 aa4.67□□□□□ -1.66
VPS53-209ENST00000570771 SBSPONQ8IVN8 264 aa4.67□□□□□ -1.66
VPS53-209ENST00000570771 MRAPQ8TCY5 172 aa4.67□□□□□ -1.66
VPS53-209ENST00000570771 RCHY1Q96PM5 261 aa4.67□□□□□ -1.66
VPS53-209ENST00000570771 NEU1Q99519 415 aa4.67□□□□□ -1.66
VPS53-209ENST00000570771 TP53TG1Q9Y2A0 90 aa4.67□□□□□ -1.66
VPS53-209ENST00000570771 IGKV3D-20A0A0C4DH25 116 aa4.66□□□□□ -1.66
VPS53-209ENST00000570771 A0A1B0GUT8 65 aa4.66□□□□□ -1.66
VPS53-209ENST00000570771 GRIFINA4D1Z8 144 aa4.66□□□□□ -1.66
VPS53-209ENST00000570771 SNURFLB1AK76 121 aa4.66□□□□□ -1.66
VPS53-209ENST00000570771 PRM2P04554 102 aa4.66□□□□□ -1.66
VPS53-209ENST00000570771 TYMSP04818 313 aa4.66□□□□□ -1.66
VPS53-209ENST00000570771 OR5AL1P0C617 328 aa4.66□□□□□ -1.66
VPS53-209ENST00000570771 HTN1P15515 57 aa4.66□□□□□ -1.66
VPS53-209ENST00000570771 CTRLP40313 264 aa4.66□□□□□ -1.66
VPS53-209ENST00000570771 TCL1AP56279 114 aa4.66□□□□□ -1.66
VPS53-209ENST00000570771 SPANXN1Q5VSR9 72 aa4.66□□□□□ -1.66
VPS53-209ENST00000570771 TMEM88Q6PEY1 159 aa4.66□□□□□ -1.66
VPS53-209ENST00000570771 RASL11AQ6T310 242 aa4.66□□□□□ -1.66
VPS53-209ENST00000570771 ZNF705AQ6ZN79 300 aaPredicted RBP4.66□□□□□ -1.66
VPS53-209ENST00000570771 SMIM15Q7Z3B0 74 aa4.66□□□□□ -1.66
VPS53-209ENST00000570771 CBLN2Q8IUK8 224 aa4.66□□□□□ -1.66
VPS53-209ENST00000570771 C1orf158Q8N1D5 194 aa4.66□□□□□ -1.66
VPS53-209ENST00000570771 SYT8Q8NBV8 401 aa4.66□□□□□ -1.66
VPS53-209ENST00000570771 CSNK1G2-AS1Q8NCQ2 148 aa4.66□□□□□ -1.66
VPS53-209ENST00000570771 TMEM263Q8WUH6 116 aaKnown RBP4.66□□□□□ -1.66
VPS53-209ENST00000570771 C16orf74Q96GX8 76 aa4.66□□□□□ -1.66
VPS53-209ENST00000570771 PGLYRP4Q96LB8 373 aa4.66□□□□□ -1.66
VPS53-209ENST00000570771 SPXQ9BT56 116 aa4.66□□□□□ -1.66
VPS53-209ENST00000570771 TPPP3Q9BW30 176 aa4.66□□□□□ -1.66
VPS53-209ENST00000570771 C11orf21Q9P2W6 132 aa4.66□□□□□ -1.66
VPS53-209ENST00000570771 TP53TG3Q9ULZ0 132 aa4.66□□□□□ -1.66
VPS53-209ENST00000570771 PHLDA3Q9Y5J5 127 aa4.66□□□□□ -1.66
VPS53-209ENST00000570771 URGCP-MRPS24S4R325 110 aa4.66□□□□□ -1.66
VPS53-209ENST00000570771 KMT2CQ8NEZ4 4911 aaKnown RBP4.66□□□□□ -1.66
VPS53-209ENST00000570771 DNAH1Q9P2D7 4330 aa4.65□□□□□ -1.66
VPS53-209ENST00000570771 LYSTQ99698 3801 aa4.65□□□□□ -1.66
VPS53-209ENST00000570771 TRBV24-1A0A075B6N3 115 aa4.65□□□□□ -1.67
VPS53-209ENST00000570771 IGHV3-16A0A0C4DH30 117 aa4.65□□□□□ -1.67
VPS53-209ENST00000570771 H3BVH4 76 aa4.65□□□□□ -1.67
VPS53-209ENST00000570771 GNRH2O43555 120 aa4.65□□□□□ -1.67
VPS53-209ENST00000570771 SPRY2O43597 315 aa4.65□□□□□ -1.67
VPS53-209ENST00000570771 SNAI2O43623 268 aa4.65□□□□□ -1.67
VPS53-209ENST00000570771 ARMS2P0C7Q2 107 aa4.65□□□□□ -1.67
VPS53-209ENST00000570771 TRGC1P0CF51 173 aa4.65□□□□□ -1.67
VPS53-209ENST00000570771 IGLC6P0CF74 106 aa4.65□□□□□ -1.67
VPS53-209ENST00000570771 GZMBP10144 247 aa4.65□□□□□ -1.67
VPS53-209ENST00000570771 MIFP14174 115 aa4.65□□□□□ -1.67
VPS53-209ENST00000570771 FAM3BP58499 235 aaPredicted RBP4.65□□□□□ -1.67
VPS53-209ENST00000570771 ELOBQ15370 118 aa4.65□□□□□ -1.67
VPS53-209ENST00000570771 DEFB135Q30KP9 77 aa4.65□□□□□ -1.67
VPS53-209ENST00000570771 DEFB121Q5J5C9 76 aa4.65□□□□□ -1.67
VPS53-209ENST00000570771 LYZL1Q6UWQ5 148 aa4.65□□□□□ -1.67
VPS53-209ENST00000570771 ZFP82Q8N141 532 aa4.65□□□□□ -1.67
VPS53-209ENST00000570771 NUP35Q8NFH5 326 aa4.65□□□□□ -1.67
VPS53-209ENST00000570771 RNF183Q96D59 192 aa4.65□□□□□ -1.67
VPS53-209ENST00000570771 NDUFAF3Q9BU61 184 aa4.65□□□□□ -1.67
VPS53-209ENST00000570771 IGHV4-4A0A075B6R2 117 aa4.64□□□□□ -1.67
VPS53-209ENST00000570771 TEX48A0A1B0GUV7 120 aa4.64□□□□□ -1.67
VPS53-209ENST00000570771 M0R2P5 195 aa4.64□□□□□ -1.67
VPS53-209ENST00000570771 SCO1O75880 301 aa4.64□□□□□ -1.67
VPS53-209ENST00000570771 MT-ND6P03923 174 aa4.64□□□□□ -1.67
VPS53-209ENST00000570771 RNASE3P12724 160 aaKnown RBP4.64□□□□□ -1.67
VPS53-209ENST00000570771 HBBP68871 147 aa4.64□□□□□ -1.67
VPS53-209ENST00000570771 TWIST1Q15672 202 aa4.64□□□□□ -1.67
VPS53-209ENST00000570771 PIK3CD-AS1Q5SR53 167 aa4.64□□□□□ -1.67
VPS53-209ENST00000570771 OR11H2Q8NH07 326 aa4.64□□□□□ -1.67
VPS53-209ENST00000570771 GTSF1Q8WW33 167 aa4.64□□□□□ -1.67
VPS53-209ENST00000570771 PTH2Q96A98 100 aa4.64□□□□□ -1.67
VPS53-209ENST00000570771 FAM210BQ96KR6 192 aa4.64□□□□□ -1.67
VPS53-209ENST00000570771 C9orf85Q96MD7 179 aa4.64□□□□□ -1.67
VPS53-209ENST00000570771 SPATA25Q9BR10 227 aa4.64□□□□□ -1.67
VPS53-209ENST00000570771 CNFNQ9BYD5 112 aa4.64□□□□□ -1.67
VPS53-209ENST00000570771 SCRT2Q9NQ03 307 aa4.64□□□□□ -1.67
VPS53-209ENST00000570771 TIMM8BQ9Y5J9 83 aaPredicted RBP4.64□□□□□ -1.67
VPS53-209ENST00000570771 RYR3Q15413 4870 aa4.63□□□□□ -1.67
VPS53-209ENST00000570771 M0R381 172 aa4.63□□□□□ -1.67
VPS53-209ENST00000570771 SPINK4O60575 86 aa4.63□□□□□ -1.67
VPS53-209ENST00000570771 HLA-DQA1P01909 254 aa4.63□□□□□ -1.67
VPS53-209ENST00000570771 SMIM17P0DL12 118 aa4.63□□□□□ -1.67
VPS53-209ENST00000570771 NTF3P20783 257 aa4.63□□□□□ -1.67
VPS53-209ENST00000570771 RAB4BP61018 213 aa4.63□□□□□ -1.67
VPS53-209ENST00000570771 DAZ2Q13117 558 aaKnown RBP4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms