RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 SONP18583 2426 aaKnown RBP9.39□□□□□ -0.91
LDLR-205ENST00000557933 JMJD1CQ15652 2540 aa9.39□□□□□ -0.91
LDLR-205ENST00000557933 ZNF815PA8K554 130 aa9.39□□□□□ -0.91
LDLR-205ENST00000557933 SAA4P35542 130 aa9.39□□□□□ -0.91
LDLR-205ENST00000557933 MUC4Q99102 2169 aa9.39□□□□□ -0.91
LDLR-205ENST00000557933 CFAP46Q8IYW2 2715 aa9.39□□□□□ -0.91
LDLR-205ENST00000557933 DUSP14O95147 198 aaKnown RBP9.39□□□□□ -0.91
LDLR-205ENST00000557933 LY6EQ16553 131 aa9.39□□□□□ -0.91
LDLR-205ENST00000557933 LY6G5BQ8NDX9 201 aa9.39□□□□□ -0.91
LDLR-205ENST00000557933 TM2D2Q9BX73 214 aa9.39□□□□□ -0.91
LDLR-205ENST00000557933 ACACBO00763 2458 aa9.39□□□□□ -0.91
LDLR-205ENST00000557933 ODF3BA8MYP8 253 aa9.38□□□□□ -0.91
LDLR-205ENST00000557933 ATP5LO75964 103 aa9.38□□□□□ -0.91
LDLR-205ENST00000557933 FAM74A4Q5TZK3 123 aa9.38□□□□□ -0.91
LDLR-205ENST00000557933 OPRPNQ99935 248 aaPredicted RBP9.38□□□□□ -0.91
LDLR-205ENST00000557933 RNF5Q99942 180 aa9.38□□□□□ -0.91
LDLR-205ENST00000557933 RASL10AQ92737 203 aa9.38□□□□□ -0.91
LDLR-205ENST00000557933 SMIM2Q9BVW6 85 aa9.38□□□□□ -0.91
LDLR-205ENST00000557933 PHLDA3Q9Y5J5 127 aa9.38□□□□□ -0.91
LDLR-205ENST00000557933 LGALS1P09382 135 aaKnown RBP9.38□□□□□ -0.91
LDLR-205ENST00000557933 ADORA2A-AS1P86434 159 aa9.38□□□□□ -0.91
LDLR-205ENST00000557933 SRSF1Q07955 248 aaKnown RBP eCLIP9.38□□□□□ -0.912e-6■■□□□ 14.5
LDLR-205ENST00000557933 MORN3Q6PF18 240 aaPredicted RBP9.38□□□□□ -0.91
LDLR-205ENST00000557933 C2orf66Q6UXQ4 117 aa9.38□□□□□ -0.91
LDLR-205ENST00000557933 ABCA12Q86UK0 2595 aa9.37□□□□□ -0.91
LDLR-205ENST00000557933 MXRA5Q9NR99 2828 aa9.37□□□□□ -0.91
LDLR-205ENST00000557933 RRN3P1Q2M238 152 aa9.37□□□□□ -0.91
LDLR-205ENST00000557933 ANXA2RQ3ZCQ2 193 aa9.37□□□□□ -0.91
LDLR-205ENST00000557933 LINC00477Q96M19 166 aa9.37□□□□□ -0.91
LDLR-205ENST00000557933 METTL26Q96S19 204 aa9.37□□□□□ -0.91
LDLR-205ENST00000557933 CNFNQ9BYD5 112 aa9.37□□□□□ -0.91
LDLR-205ENST00000557933 F5H697 171 aa9.37□□□□□ -0.91
LDLR-205ENST00000557933 F8VRH5 84 aa9.37□□□□□ -0.91
LDLR-205ENST00000557933 LY6DQ14210 128 aa9.37□□□□□ -0.91
LDLR-205ENST00000557933 Q6ZS46 218 aa9.37□□□□□ -0.91
LDLR-205ENST00000557933 SYT8Q8NBV8 401 aa9.37□□□□□ -0.91
LDLR-205ENST00000557933 HIGD1BQ9P298 99 aa9.37□□□□□ -0.91
LDLR-205ENST00000557933 MYMXA0A1B0GTQ4 84 aa9.36□□□□□ -0.91
LDLR-205ENST00000557933 SUMO2P61956 95 aaKnown RBP9.36□□□□□ -0.91
LDLR-205ENST00000557933 SRSF8Q9BRL6 282 aaKnown RBP9.36□□□□□ -0.91
LDLR-205ENST00000557933 NF1P21359 2839 aa9.36□□□□□ -0.91
LDLR-205ENST00000557933 FHL3Q13643 280 aa9.36□□□□□ -0.91
LDLR-205ENST00000557933 NFE4Q86UQ8 179 aa9.36□□□□□ -0.91
LDLR-205ENST00000557933 EPG5Q9HCE0 2579 aa9.36□□□□□ -0.91
LDLR-205ENST00000557933 TRBV7-3A0A075B6L6 115 aa9.35□□□□□ -0.91
LDLR-205ENST00000557933 BAALCQ8WXS3 180 aa9.35□□□□□ -0.91
LDLR-205ENST00000557933 KIR2DL4Q99706 377 aa9.35□□□□□ -0.91
LDLR-205ENST00000557933 H7C1H1 209 aa9.35□□□□□ -0.91
LDLR-205ENST00000557933 NDUFS8O00217 210 aa9.35□□□□□ -0.91
LDLR-205ENST00000557933 HOXA3O43365 443 aaPredicted RBP9.35□□□□□ -0.91
LDLR-205ENST00000557933 SMCPP49901 116 aaPredicted RBP9.35□□□□□ -0.91
LDLR-205ENST00000557933 ZNF256Q9Y2P7 627 aaPredicted RBP9.35□□□□□ -0.91
LDLR-205ENST00000557933 RAB9AP51151 201 aa9.35□□□□□ -0.91
LDLR-205ENST00000557933 TMEM170BQ5T4T1 132 aa9.35□□□□□ -0.91
LDLR-205ENST00000557933 Q8N6K4 173 aa9.35□□□□□ -0.91
LDLR-205ENST00000557933 RAX2Q96IS3 184 aa9.35□□□□□ -0.91
LDLR-205ENST00000557933 HTN1P15515 57 aa9.34□□□□□ -0.91
LDLR-205ENST00000557933 SPOCK3Q9BQ16 436 aa9.34□□□□□ -0.91
LDLR-205ENST00000557933 C11orf86A6NJI1 115 aa9.34□□□□□ -0.91
LDLR-205ENST00000557933 ADARB2-AS1A8MUL3 147 aa9.34□□□□□ -0.91
LDLR-205ENST00000557933 MT-ATP8P03928 68 aa9.34□□□□□ -0.91
LDLR-205ENST00000557933 COX8CQ7Z4L0 72 aa9.34□□□□□ -0.91
LDLR-205ENST00000557933 BPESC1Q9GZL8 116 aa9.34□□□□□ -0.91
LDLR-205ENST00000557933 PRO0461Q9UI25 63 aa9.34□□□□□ -0.91
LDLR-205ENST00000557933 F8W1H4 67 aa9.33□□□□□ -0.92
LDLR-205ENST00000557933 PLNP26678 52 aa9.33□□□□□ -0.92
LDLR-205ENST00000557933 TSPEAR-AS2P59090 65 aa9.33□□□□□ -0.92
LDLR-205ENST00000557933 ZNF580Q9UK33 172 aa9.33□□□□□ -0.92
LDLR-205ENST00000557933 TP53TG1Q9Y2A0 90 aa9.33□□□□□ -0.92
LDLR-205ENST00000557933 TRAV12-2A0A075B6T6 113 aa9.33□□□□□ -0.92
LDLR-205ENST00000557933 SCGB2A1O75556 95 aa9.33□□□□□ -0.92
LDLR-205ENST00000557933 FAM110DQ8TAY7 271 aaPredicted RBP9.32□□□□□ -0.92
LDLR-205ENST00000557933 SLC50A1Q9BRV3 221 aa9.32□□□□□ -0.92
LDLR-205ENST00000557933 BEX4Q9NWD9 120 aaPredicted RBP9.32□□□□□ -0.92
LDLR-205ENST00000557933 LRRK2Q5S007 2527 aa9.32□□□□□ -0.92
LDLR-205ENST00000557933 CCDC168Q8NDH2 2452 aa9.32□□□□□ -0.92
LDLR-205ENST00000557933 GPHB5Q86YW7 130 aa9.32□□□□□ -0.92
LDLR-205ENST00000557933 NEXN-AS1Q8NBZ9 246 aa9.32□□□□□ -0.92
LDLR-205ENST00000557933 SMPXQ9UHP9 88 aa9.32□□□□□ -0.92
LDLR-205ENST00000557933 AKAP9Q99996 3911 aa9.32□□□□□ -0.92
LDLR-205ENST00000557933 TSPAN13O95857 204 aa9.32□□□□□ -0.92
LDLR-205ENST00000557933 CKS1BP61024 79 aa9.32□□□□□ -0.92
LDLR-205ENST00000557933 TMEM95Q3KNT9 176 aa9.32□□□□□ -0.92
LDLR-205ENST00000557933 ZFAND2AQ8N6M9 145 aa9.32□□□□□ -0.92
LDLR-205ENST00000557933 NAV2Q8IVL1 2488 aa9.31□□□□□ -0.92
LDLR-205ENST00000557933 M0R1W7 72 aa9.31□□□□□ -0.92
LDLR-205ENST00000557933 PRM2P04554 102 aa9.31□□□□□ -0.92
LDLR-205ENST00000557933 RNASE13Q5GAN3 156 aaKnown RBP9.31□□□□□ -0.92
LDLR-205ENST00000557933 EEF1AKMT3Q96AZ1 226 aa9.31□□□□□ -0.92
LDLR-205ENST00000557933 ZNF48Q96MX3 618 aaPredicted RBP9.31□□□□□ -0.92
LDLR-205ENST00000557933 TRAV26-1A0A087WT03 109 aa9.31□□□□□ -0.92
LDLR-205ENST00000557933 SCGB1C2P0DMR2 95 aa9.31□□□□□ -0.92
LDLR-205ENST00000557933 NPC2P61916 151 aa9.31□□□□□ -0.92
LDLR-205ENST00000557933 AJUBAQ96IF1 538 aa9.31□□□□□ -0.92
LDLR-205ENST00000557933 CHD6Q8TD26 2715 aa9.3□□□□□ -0.92
LDLR-205ENST00000557933 TRAV12-3A0A0B4J271 114 aa9.3□□□□□ -0.92
LDLR-205ENST00000557933 RNF223E7ERA6 249 aa9.3□□□□□ -0.92
LDLR-205ENST00000557933 J3QR89 54 aa9.3□□□□□ -0.92
LDLR-205ENST00000557933 CIDEAO60543 219 aa9.3□□□□□ -0.92
LDLR-205ENST00000557933 TSHBP01222 138 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms