RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 ELOBQ15370 118 aa9.38□□□□□ -0.91
LIMCH1-220ENST00000514190 WDR73Q6P4I2 378 aa9.38□□□□□ -0.91
LIMCH1-220ENST00000514190 SBSPONQ8IVN8 264 aa9.38□□□□□ -0.91
LIMCH1-220ENST00000514190 C11orf72Q8NBR9 251 aa9.38□□□□□ -0.91
LIMCH1-220ENST00000514190 OR11H2Q8NH07 326 aa9.38□□□□□ -0.91
LIMCH1-220ENST00000514190 C9orf85Q96MD7 179 aa9.38□□□□□ -0.91
LIMCH1-220ENST00000514190 OVOL2Q9BRP0 275 aa9.38□□□□□ -0.91
LIMCH1-220ENST00000514190 TPPP3Q9BW30 176 aa9.38□□□□□ -0.91
LIMCH1-220ENST00000514190 ZNF415Q09FC8 603 aa9.37□□□□□ -0.91
LIMCH1-220ENST00000514190 RNASE8Q8TDE3 154 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-220ENST00000514190 TMEM263Q8WUH6 116 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-220ENST00000514190 BTF3L4Q96K17 158 aa9.37□□□□□ -0.91
LIMCH1-220ENST00000514190 CNFNQ9BYD5 112 aa9.37□□□□□ -0.91
LIMCH1-220ENST00000514190 GSN-AS1Q9NRJ2 163 aa9.37□□□□□ -0.91
LIMCH1-220ENST00000514190 TIMM8BQ9Y5J9 83 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-220ENST00000514190 HUWE1Q7Z6Z7 4374 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-220ENST00000514190 TRBV24-1A0A075B6N3 115 aa9.36□□□□□ -0.91
LIMCH1-220ENST00000514190 IGHV4-4A0A075B6R2 117 aa9.36□□□□□ -0.91
LIMCH1-220ENST00000514190 A0A1B0GUT8 65 aa9.36□□□□□ -0.91
LIMCH1-220ENST00000514190 CACNG7P62955 275 aa9.36□□□□□ -0.91
LIMCH1-220ENST00000514190 RIGQ13278 110 aa9.36□□□□□ -0.91
LIMCH1-220ENST00000514190 C16orf74Q96GX8 76 aa9.36□□□□□ -0.91
LIMCH1-220ENST00000514190 B9D2Q9BPU9 175 aa9.36□□□□□ -0.91
LIMCH1-220ENST00000514190 SPXQ9BT56 116 aa9.36□□□□□ -0.91
LIMCH1-220ENST00000514190 PHLDA3Q9Y5J5 127 aa9.36□□□□□ -0.91
LIMCH1-220ENST00000514190 TENM3Q9P273 2699 aa9.36□□□□□ -0.91
LIMCH1-220ENST00000514190 STAB2Q8WWQ8 2551 aa9.35□□□□□ -0.91
LIMCH1-220ENST00000514190 TGIF2-C20orf24A0A0A6YYL0 155 aa9.35□□□□□ -0.91
LIMCH1-220ENST00000514190 MUC21A0A0G2JKD1 596 aa9.35□□□□□ -0.91
LIMCH1-220ENST00000514190 MUC21A0A140T8X8 626 aa9.35□□□□□ -0.91
LIMCH1-220ENST00000514190 PLAC8L1A1L4L8 177 aa9.35□□□□□ -0.91
LIMCH1-220ENST00000514190 SPINK4O60575 86 aa9.35□□□□□ -0.91
LIMCH1-220ENST00000514190 DAZ2Q13117 558 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-220ENST00000514190 OR10AG1Q8NH19 301 aa9.35□□□□□ -0.91
LIMCH1-220ENST00000514190 IL17DQ8TAD2 202 aa9.35□□□□□ -0.91
LIMCH1-220ENST00000514190 PTH2Q96A98 100 aa9.35□□□□□ -0.91
LIMCH1-220ENST00000514190 BORCS7Q96B45 105 aa9.35□□□□□ -0.91
LIMCH1-220ENST00000514190 COLCA2A8K830 154 aa9.34□□□□□ -0.91
LIMCH1-220ENST00000514190 SNURFLB1AK76 121 aa9.34□□□□□ -0.91
LIMCH1-220ENST00000514190 M0R2P5 195 aa9.34□□□□□ -0.91
LIMCH1-220ENST00000514190 NXPH4O95158 308 aa9.34□□□□□ -0.91
LIMCH1-220ENST00000514190 MIFP14174 115 aa9.34□□□□□ -0.91
LIMCH1-220ENST00000514190 NTF3P20783 257 aa9.34□□□□□ -0.91
LIMCH1-220ENST00000514190 SSTP61278 116 aa9.34□□□□□ -0.91
LIMCH1-220ENST00000514190 SPANXN1Q5VSR9 72 aa9.34□□□□□ -0.91
LIMCH1-220ENST00000514190 DMRTA1Q5VZB9 504 aa9.34□□□□□ -0.91
LIMCH1-220ENST00000514190 ATP5L2Q7Z4Y8 100 aa9.34□□□□□ -0.91
LIMCH1-220ENST00000514190 IGHV4-28A0A0C4DH34 117 aa9.33□□□□□ -0.92
LIMCH1-220ENST00000514190 A0A1B0GW15 77 aa9.33□□□□□ -0.92
LIMCH1-220ENST00000514190 A0A1B0GXF2 115 aa9.33□□□□□ -0.92
LIMCH1-220ENST00000514190 TWIST1Q15672 202 aa9.33□□□□□ -0.92
LIMCH1-220ENST00000514190 PIK3CD-AS1Q5SR53 167 aa9.33□□□□□ -0.92
LIMCH1-220ENST00000514190 MRPL54Q6P161 138 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-220ENST00000514190 ZFP82Q8N141 532 aa9.33□□□□□ -0.92
LIMCH1-220ENST00000514190 SYT8Q8NBV8 401 aa9.33□□□□□ -0.92
LIMCH1-220ENST00000514190 FAM210BQ96KR6 192 aa9.33□□□□□ -0.92
LIMCH1-220ENST00000514190 SPATA25Q9BR10 227 aa9.33□□□□□ -0.92
LIMCH1-220ENST00000514190 TM2D3Q9BRN9 247 aa9.33□□□□□ -0.92
LIMCH1-220ENST00000514190 RETNQ9HD89 108 aa9.33□□□□□ -0.92
LIMCH1-220ENST00000514190 MSRB1Q9NZV6 116 aa9.33□□□□□ -0.92
LIMCH1-220ENST00000514190 M0R381 172 aa9.32□□□□□ -0.92
LIMCH1-220ENST00000514190 HBBP68871 147 aa9.32□□□□□ -0.92
LIMCH1-220ENST00000514190 LGALS9BQ3B8N2 356 aa9.32□□□□□ -0.92
LIMCH1-220ENST00000514190 RASL11AQ6T310 242 aa9.32□□□□□ -0.92
LIMCH1-220ENST00000514190 Q8NAQ8 132 aa9.32□□□□□ -0.92
LIMCH1-220ENST00000514190 NOP10Q9NPE3 64 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-220ENST00000514190 S100A8P05109 93 aa9.31□□□□□ -0.92
LIMCH1-220ENST00000514190 CAMPP49913 170 aa9.31□□□□□ -0.92
LIMCH1-220ENST00000514190 ZNF876PQ49A33 203 aa9.31□□□□□ -0.92
LIMCH1-220ENST00000514190 RASL10AQ92737 203 aa9.31□□□□□ -0.92
LIMCH1-220ENST00000514190 MUC4Q99102 2169 aa9.3□□□□□ -0.92
LIMCH1-220ENST00000514190 EMP1P54849 157 aa9.3□□□□□ -0.92
LIMCH1-220ENST00000514190 COX19Q49B96 90 aa9.3□□□□□ -0.92
LIMCH1-220ENST00000514190 GATD1Q8NB37 220 aa9.3□□□□□ -0.92
LIMCH1-220ENST00000514190 NDUFAF3Q9BU61 184 aa9.3□□□□□ -0.92
LIMCH1-220ENST00000514190 TRGV1A0A0A0MS02 117 aa9.29□□□□□ -0.92
LIMCH1-220ENST00000514190 LYRM9A8MSI8 78 aa9.29□□□□□ -0.92
LIMCH1-220ENST00000514190 DEFB4AO15263 64 aa9.29□□□□□ -0.92
LIMCH1-220ENST00000514190 TRGC1P0CF51 173 aa9.29□□□□□ -0.92
LIMCH1-220ENST00000514190 NHLRC4P0CG21 123 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-220ENST00000514190 Q6ZTI0 123 aa9.29□□□□□ -0.92
LIMCH1-220ENST00000514190 GNB1LQ9BYB4 327 aa9.29□□□□□ -0.92
LIMCH1-220ENST00000514190 TMEM191AQ9H0A3 160 aa9.29□□□□□ -0.92
LIMCH1-220ENST00000514190 ZMAT4Q9H898 229 aa9.29□□□□□ -0.92
LIMCH1-220ENST00000514190 MRPL16Q9NX20 251 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-220ENST00000514190 KMT2CQ8NEZ4 4911 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-220ENST00000514190 RAB5AP20339 215 aa9.28□□□□□ -0.92
LIMCH1-220ENST00000514190 EVI2AP22794 236 aa9.28□□□□□ -0.92
LIMCH1-220ENST00000514190 TMEM136Q6ZRR5 245 aa9.28□□□□□ -0.92
LIMCH1-220ENST00000514190 SMIM15Q7Z3B0 74 aa9.28□□□□□ -0.92
LIMCH1-220ENST00000514190 LINC00612Q8N6U2 182 aa9.28□□□□□ -0.92
LIMCH1-220ENST00000514190 AP1S3Q96PC3 154 aa9.28□□□□□ -0.92
LIMCH1-220ENST00000514190 JPT2Q9H910 190 aa9.28□□□□□ -0.92
LIMCH1-220ENST00000514190 DKK2Q9UBU2 259 aa9.28□□□□□ -0.92
LIMCH1-220ENST00000514190 A8MWV9 139 aa9.27□□□□□ -0.93
LIMCH1-220ENST00000514190 RS1O15537 224 aa9.27□□□□□ -0.93
LIMCH1-220ENST00000514190 RAB4BP61018 213 aa9.27□□□□□ -0.93
LIMCH1-220ENST00000514190 FAM222AQ5U5X8 452 aa9.27□□□□□ -0.93
LIMCH1-220ENST00000514190 C14orf178Q8N769 122 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-220ENST00000514190 C11orf68Q9H3H3 251 aaKnown RBP9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms