RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 UHRF1BP1LA0JNW5 1464 aa0.37□□□□□ -2.35
HMGB1P28-201ENST00000507778 TFF1P04155 84 aa0.37□□□□□ -2.35
HMGB1P28-201ENST00000507778 MORN2Q502X0 79 aa0.37□□□□□ -2.35
HMGB1P28-201ENST00000507778 CLLU1Q5K131 121 aa0.37□□□□□ -2.35
HMGB1P28-201ENST00000507778 SPINK6Q6UWN8 80 aa0.37□□□□□ -2.35
HMGB1P28-201ENST00000507778 ATP6V0E2Q8NHE4 81 aa0.37□□□□□ -2.35
HMGB1P28-201ENST00000507778 DYNLRB2Q8TF09 96 aa0.37□□□□□ -2.35
HMGB1P28-201ENST00000507778 PPP1R1CQ8WVI7 109 aa0.37□□□□□ -2.35
HMGB1P28-201ENST00000507778 TMEM141Q96I45 108 aa0.37□□□□□ -2.35
HMGB1P28-201ENST00000507778 COA4Q9NYJ1 87 aa0.37□□□□□ -2.35
HMGB1P28-201ENST00000507778 LOC285556D6RIA3 1793 aa0.37□□□□□ -2.35
HMGB1P28-201ENST00000507778 KIDINS220Q9ULH0 1771 aa0.37□□□□□ -2.35
HMGB1P28-201ENST00000507778 NINQ8N4C6 2090 aa0.36□□□□□ -2.35
HMGB1P28-201ENST00000507778 RREB1Q92766 1687 aa0.36□□□□□ -2.35
HMGB1P28-201ENST00000507778 TRAV12-2A0A075B6T6 113 aa0.35□□□□□ -2.35
HMGB1P28-201ENST00000507778 PYYP10082 97 aa0.35□□□□□ -2.35
HMGB1P28-201ENST00000507778 BET1LQ9NYM9 111 aa0.35□□□□□ -2.35
HMGB1P28-201ENST00000507778 NAV2Q8IVL1 2488 aa0.35□□□□□ -2.35
HMGB1P28-201ENST00000507778 ATG2AQ2TAZ0 1938 aa0.34□□□□□ -2.35
HMGB1P28-201ENST00000507778 TCRBV3S1A0A5B6 114 aa0.34□□□□□ -2.36
HMGB1P28-201ENST00000507778 MCRIP1C9JLW8 97 aa0.34□□□□□ -2.36
HMGB1P28-201ENST00000507778 ZNF670-ZNF695F2Z2N8 137 aa0.34□□□□□ -2.36
HMGB1P28-201ENST00000507778 J3QLW9 94 aa0.34□□□□□ -2.36
HMGB1P28-201ENST00000507778 SLC25A6P12236 298 aa0.34□□□□□ -2.36
HMGB1P28-201ENST00000507778 ATP11AUNQ6ZP68 121 aa0.34□□□□□ -2.36
HMGB1P28-201ENST00000507778 TRPM7Q96QT4 1865 aa0.34□□□□□ -2.36
HMGB1P28-201ENST00000507778 APCP25054 2843 aa0.34□□□□□ -2.36
HMGB1P28-201ENST00000507778 M0R2P5 195 aa0.33□□□□□ -2.36
HMGB1P28-201ENST00000507778 NDUFA11Q86Y39 141 aa0.33□□□□□ -2.36
HMGB1P28-201ENST00000507778 LSM2Q9Y333 95 aaKnown RBP0.33□□□□□ -2.36
HMGB1P28-201ENST00000507778 MYH1P12882 1939 aa0.32□□□□□ -2.36
HMGB1P28-201ENST00000507778 NCS1P62166 190 aa0.32□□□□□ -2.36
HMGB1P28-201ENST00000507778 ERG28Q9UKR5 140 aa0.32□□□□□ -2.36
HMGB1P28-201ENST00000507778 MEGF8Q7Z7M0 2845 aa0.32□□□□□ -2.36
HMGB1P28-201ENST00000507778 F2Z2F3 143 aa0.31□□□□□ -2.36
HMGB1P28-201ENST00000507778 ELOF1P60002 83 aaKnown RBP0.31□□□□□ -2.36
HMGB1P28-201ENST00000507778 OR2T2Q6IF00 324 aa0.31□□□□□ -2.36
HMGB1P28-201ENST00000507778 CYP2G1PQ6ZSU1 146 aa0.31□□□□□ -2.36
HMGB1P28-201ENST00000507778 MMGT1Q8N4V1 131 aa0.31□□□□□ -2.36
HMGB1P28-201ENST00000507778 PROK2Q9HC23 129 aa0.31□□□□□ -2.36
HMGB1P28-201ENST00000507778 TRBV20-1A0A075B6N2 111 aa0.3□□□□□ -2.36
HMGB1P28-201ENST00000507778 CCDC179H3BU77 68 aa0.3□□□□□ -2.36
HMGB1P28-201ENST00000507778 EMX2Q04743 252 aa0.3□□□□□ -2.36
HMGB1P28-201ENST00000507778 VMO1Q7Z5L0 202 aa0.3□□□□□ -2.36
HMGB1P28-201ENST00000507778 IFI27L1Q96BM0 104 aa0.3□□□□□ -2.36
HMGB1P28-201ENST00000507778 TNCP24821 2201 aa0.3□□□□□ -2.36
HMGB1P28-201ENST00000507778 DLEC1Q9Y238 1755 aa0.29□□□□□ -2.36
HMGB1P28-201ENST00000507778 PTPRMP28827 1452 aa0.29□□□□□ -2.36
HMGB1P28-201ENST00000507778 RBAKDNA6NC62 111 aa0.29□□□□□ -2.36
HMGB1P28-201ENST00000507778 PRR15LQ9BU68 103 aa0.29□□□□□ -2.36
HMGB1P28-201ENST00000507778 BATF3Q9NR55 127 aa0.29□□□□□ -2.36
HMGB1P28-201ENST00000507778 KMT2DO14686 5537 aa0.29□□□□□ -2.36
HMGB1P28-201ENST00000507778 ESPL1Q14674 2120 aa0.29□□□□□ -2.36
HMGB1P28-201ENST00000507778 AFDNP55196 1824 aaKnown RBP0.29□□□□□ -2.36
HMGB1P28-201ENST00000507778 OVOS2A0A0J9YW53 1432 aa0.29□□□□□ -2.36
HMGB1P28-201ENST00000507778 OVOS2Q6IE36 1432 aa0.29□□□□□ -2.36
HMGB1P28-201ENST00000507778 ERCC6Q03468 1493 aa0.29□□□□□ -2.36
HMGB1P28-201ENST00000507778 SYNJ1O43426 1573 aa0.28□□□□□ -2.36
HMGB1P28-201ENST00000507778 KDM6BO15054 1643 aa0.28□□□□□ -2.36
HMGB1P28-201ENST00000507778 SYNE1Q8NF91 8797 aaKnown RBP0.28□□□□□ -2.36
HMGB1P28-201ENST00000507778 HIST1H1AQ02539 215 aaPredicted RBP0.28□□□□□ -2.36
HMGB1P28-201ENST00000507778 BPESC1Q9GZL8 116 aa0.28□□□□□ -2.36
HMGB1P28-201ENST00000507778 GSKIPQ9P0R6 139 aa0.28□□□□□ -2.36
HMGB1P28-201ENST00000507778 ARHGEF10O15013 1369 aa0.28□□□□□ -2.36
HMGB1P28-201ENST00000507778 SPAG17Q6Q759 2223 aa0.28□□□□□ -2.37
HMGB1P28-201ENST00000507778 MDN1Q9NU22 5596 aa0.27□□□□□ -2.37
HMGB1P28-201ENST00000507778 XIRP1Q702N8 1843 aaKnown RBP0.27□□□□□ -2.37
HMGB1P28-201ENST00000507778 ARPC5O15511 151 aa0.27□□□□□ -2.37
HMGB1P28-201ENST00000507778 CKS1BP61024 79 aa0.27□□□□□ -2.37
HMGB1P28-201ENST00000507778 LZICQ8WZA0 190 aa0.27□□□□□ -2.37
HMGB1P28-201ENST00000507778 SAR1AQ9NR31 198 aa0.27□□□□□ -2.37
HMGB1P28-201ENST00000507778 FAT4Q6V0I7 4981 aa0.26□□□□□ -2.37
HMGB1P28-201ENST00000507778 ABCA1O95477 2261 aa0.26□□□□□ -2.37
HMGB1P28-201ENST00000507778 BDP1A6H8Y1 2624 aa0.26□□□□□ -2.37
HMGB1P28-201ENST00000507778 FAM236AA0A1B0GUQ0 79 aa0.26□□□□□ -2.37
HMGB1P28-201ENST00000507778 FAM236BA0A1B0GV22 79 aa0.26□□□□□ -2.37
HMGB1P28-201ENST00000507778 COX4I1P13073 169 aa0.26□□□□□ -2.37
HMGB1P28-201ENST00000507778 CCL3L1P16619 93 aa0.26□□□□□ -2.37
HMGB1P28-201ENST00000507778 NPC2P61916 151 aa0.26□□□□□ -2.37
HMGB1P28-201ENST00000507778 SMIM3Q9BZL3 60 aa0.26□□□□□ -2.37
HMGB1P28-201ENST00000507778 DISP2A7MBM2 1401 aa0.26□□□□□ -2.37
HMGB1P28-201ENST00000507778 RBBP6Q7Z6E9 1792 aaKnown RBP0.26□□□□□ -2.37
HMGB1P28-201ENST00000507778 ANKRD17O75179 2603 aaKnown RBP0.25□□□□□ -2.37
HMGB1P28-201ENST00000507778 CDK13Q14004 1512 aaKnown RBP0.25□□□□□ -2.37
HMGB1P28-201ENST00000507778 IGLC6P0CF74 106 aa0.25□□□□□ -2.37
HMGB1P28-201ENST00000507778 SSBP1Q04837 148 aaKnown RBP0.25□□□□□ -2.37
HMGB1P28-201ENST00000507778 LINC01545Q5VT33 79 aa0.25□□□□□ -2.37
HMGB1P28-201ENST00000507778 VSTM2AQ8TAG5 236 aa0.25□□□□□ -2.37
HMGB1P28-201ENST00000507778 A0A087WTM6 91 aa0.24□□□□□ -2.37
HMGB1P28-201ENST00000507778 TRAV12-3A0A0B4J271 114 aa0.24□□□□□ -2.37
HMGB1P28-201ENST00000507778 J3QR89 54 aa0.24□□□□□ -2.37
HMGB1P28-201ENST00000507778 M0R129 80 aa0.24□□□□□ -2.37
HMGB1P28-201ENST00000507778 SPCS2Q15005 226 aa0.24□□□□□ -2.37
HMGB1P28-201ENST00000507778 C4orf33Q8N1A6 199 aa0.24□□□□□ -2.37
HMGB1P28-201ENST00000507778 NDUFA12Q9UI09 145 aa0.24□□□□□ -2.37
HMGB1P28-201ENST00000507778 HELZP42694 1942 aaKnown RBP0.24□□□□□ -2.37
HMGB1P28-201ENST00000507778 SOGA1O94964 1423 aa0.23□□□□□ -2.37
HMGB1P28-201ENST00000507778 GVQW2A0A096LPI5 108 aaPredicted RBP0.23□□□□□ -2.37
HMGB1P28-201ENST00000507778 TSPAN19P0C672 248 aa0.23□□□□□ -2.37
HMGB1P28-201ENST00000507778 FAM74A4Q5TZK3 123 aa0.23□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms