RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 G3V4G9 280 aa7.02□□□□□ -1.29
USP54-214ENST00000492357 J3KRW8 73 aa7.02□□□□□ -1.29
USP54-214ENST00000492357 RNASE3P12724 160 aaKnown RBP7.02□□□□□ -1.29
USP54-214ENST00000492357 RPL35AP18077 110 aaKnown RBP7.02□□□□□ -1.29
USP54-214ENST00000492357 TCL1AP56279 114 aa7.02□□□□□ -1.29
USP54-214ENST00000492357 RRN3P1Q2M238 152 aa7.02□□□□□ -1.29
USP54-214ENST00000492357 LGALS9BQ3B8N2 356 aa7.02□□□□□ -1.29
USP54-214ENST00000492357 MUC21Q5SSG8 566 aa7.02□□□□□ -1.29
USP54-214ENST00000492357 TMEM191AQ9H0A3 160 aa7.02□□□□□ -1.29
USP54-214ENST00000492357 NAGKQ9UJ70 344 aa7.02□□□□□ -1.29
USP54-214ENST00000492357 TMSB15BA0A087X1C1 80 aa7.01□□□□□ -1.29
USP54-214ENST00000492357 TEX48A0A1B0GUV7 120 aa7.01□□□□□ -1.29
USP54-214ENST00000492357 RBMY1A1P0DJD3 496 aaKnown RBP7.01□□□□□ -1.29
USP54-214ENST00000492357 RBMY1CP0DJD4 496 aa7.01□□□□□ -1.29
USP54-214ENST00000492357 PRB4P10163 310 aaPredicted RBP7.01□□□□□ -1.29
USP54-214ENST00000492357 MIFP14174 115 aa7.01□□□□□ -1.29
USP54-214ENST00000492357 DAZ2Q13117 558 aaKnown RBP7.01□□□□□ -1.29
USP54-214ENST00000492357 RBMY1FQ15415 496 aaKnown RBP7.01□□□□□ -1.29
USP54-214ENST00000492357 SPANXN1Q5VSR9 72 aa7.01□□□□□ -1.29
USP54-214ENST00000492357 IL17DQ8TAD2 202 aa7.01□□□□□ -1.29
USP54-214ENST00000492357 RNASE8Q8TDE3 154 aaKnown RBP7.01□□□□□ -1.29
USP54-214ENST00000492357 RNF183Q96D59 192 aa7.01□□□□□ -1.29
USP54-214ENST00000492357 PGLYRP4Q96LB8 373 aa7.01□□□□□ -1.29
USP54-214ENST00000492357 AP1S3Q96PC3 154 aa7.01□□□□□ -1.29
USP54-214ENST00000492357 TGIF2-C20orf24A0A0A6YYL0 155 aa7□□□□□ -1.29
USP54-214ENST00000492357 GRIFINA4D1Z8 144 aa7□□□□□ -1.29
USP54-214ENST00000492357 SNURFLB1AK76 121 aa7□□□□□ -1.29
USP54-214ENST00000492357 H3BVH4 76 aa7□□□□□ -1.29
USP54-214ENST00000492357 M0R2P5 195 aa7□□□□□ -1.29
USP54-214ENST00000492357 PPBPP02775 128 aa7□□□□□ -1.29
USP54-214ENST00000492357 GZMBP10144 247 aa7□□□□□ -1.29
USP54-214ENST00000492357 NTF3P20783 257 aa7□□□□□ -1.29
USP54-214ENST00000492357 FXYD7P58549 80 aa7□□□□□ -1.29
USP54-214ENST00000492357 C11orf72Q8NBR9 251 aa7□□□□□ -1.29
USP54-214ENST00000492357 C18orf15Q96N68 181 aa7□□□□□ -1.29
USP54-214ENST00000492357 RCHY1Q96PM5 261 aa7□□□□□ -1.29
USP54-214ENST00000492357 OVOL2Q9BRP0 275 aa7□□□□□ -1.29
USP54-214ENST00000492357 A8MWV9 139 aa6.99□□□□□ -1.29
USP54-214ENST00000492357 RHODO00212 210 aa6.99□□□□□ -1.29
USP54-214ENST00000492357 GNRH2O43555 120 aa6.99□□□□□ -1.29
USP54-214ENST00000492357 SPRY2O43597 315 aa6.99□□□□□ -1.29
USP54-214ENST00000492357 PPP1R17O96001 155 aa6.99□□□□□ -1.29
USP54-214ENST00000492357 RPS10P46783 165 aaKnown RBP6.99□□□□□ -1.29
USP54-214ENST00000492357 TNP2Q05952 138 aa6.99□□□□□ -1.29
USP54-214ENST00000492357 MRPL54Q6P161 138 aaKnown RBP6.99□□□□□ -1.29
USP54-214ENST00000492357 TMEM136Q6ZRR5 245 aa6.99□□□□□ -1.29
USP54-214ENST00000492357 RASL10AQ92737 203 aa6.99□□□□□ -1.29
USP54-214ENST00000492357 LAMTOR2Q9Y2Q5 125 aa6.99□□□□□ -1.29
USP54-214ENST00000492357 PKD1L1Q8TDX9 2849 aa6.98□□□□□ -1.29
USP54-214ENST00000492357 C1orf196B1AJZ1 125 aa6.98□□□□□ -1.29
USP54-214ENST00000492357 FRMD6-AS1P0C7T7 363 aa6.98□□□□□ -1.29
USP54-214ENST00000492357 TWIST1Q15672 202 aa6.98□□□□□ -1.29
USP54-214ENST00000492357 ZFP2Q6ZN57 461 aa6.98□□□□□ -1.29
USP54-214ENST00000492357 Q6ZQT7 251 aa6.98□□□□□ -1.29
USP54-214ENST00000492357 POM121L12Q8N7R1 296 aa6.98□□□□□ -1.29
USP54-214ENST00000492357 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.98□□□□□ -1.29
USP54-214ENST00000492357 OR10AG1Q8NH19 301 aa6.98□□□□□ -1.29
USP54-214ENST00000492357 TPPP3Q9BW30 176 aa6.98□□□□□ -1.29
USP54-214ENST00000492357 DPH3P1Q9H4G8 78 aa6.98□□□□□ -1.29
USP54-214ENST00000492357 EDA2RQ9HAV5 297 aa6.98□□□□□ -1.29
USP54-214ENST00000492357 GSN-AS1Q9NRJ2 163 aa6.98□□□□□ -1.29
USP54-214ENST00000492357 MDFICQ9P1T7 246 aa6.98□□□□□ -1.29
USP54-214ENST00000492357 TIMM8BQ9Y5J9 83 aaPredicted RBP6.98□□□□□ -1.29
USP54-214ENST00000492357 TRAPPC1Q9Y5R8 145 aa6.98□□□□□ -1.29
USP54-214ENST00000492357 LYRM9A8MSI8 78 aa6.97□□□□□ -1.29
USP54-214ENST00000492357 PHOX2AO14813 284 aa6.97□□□□□ -1.29
USP54-214ENST00000492357 SPINK4O60575 86 aa6.97□□□□□ -1.29
USP54-214ENST00000492357 SMIM17P0DL12 118 aa6.97□□□□□ -1.29
USP54-214ENST00000492357 CAMPP49913 170 aa6.97□□□□□ -1.29
USP54-214ENST00000492357 RAB5BP61020 215 aa6.97□□□□□ -1.29
USP54-214ENST00000492357 ZNF876PQ49A33 203 aa6.97□□□□□ -1.29
USP54-214ENST00000492357 FAM104BQ5XKR9 115 aa6.97□□□□□ -1.29
USP54-214ENST00000492357 MRAP2Q96G30 205 aa6.97□□□□□ -1.29
USP54-214ENST00000492357 X6R8D5 127 aa6.97□□□□□ -1.29
USP54-214ENST00000492357 TRRAPQ9Y4A5 3859 aa6.96□□□□□ -1.29
USP54-214ENST00000492357 M0R381 172 aa6.96□□□□□ -1.3
USP54-214ENST00000492357 APCSP02743 223 aa6.96□□□□□ -1.3
USP54-214ENST00000492357 RAB4BP61018 213 aa6.96□□□□□ -1.3
USP54-214ENST00000492357 LINC00612Q8N6U2 182 aa6.96□□□□□ -1.3
USP54-214ENST00000492357 SPATA25Q9BR10 227 aa6.96□□□□□ -1.3
USP54-214ENST00000492357 MRPL18Q9H0U6 180 aaKnown RBP6.96□□□□□ -1.3
USP54-214ENST00000492357 C11orf68Q9H3H3 251 aaKnown RBP6.96□□□□□ -1.3
USP54-214ENST00000492357 MGAM2Q2M2H8 2515 aa6.96□□□□□ -1.3
USP54-214ENST00000492357 IGHV3OR16-12A0A075B7B8 117 aa6.95□□□□□ -1.3
USP54-214ENST00000492357 H7C1H1 209 aa6.95□□□□□ -1.3
USP54-214ENST00000492357 K7EIL1 84 aa6.95□□□□□ -1.3
USP54-214ENST00000492357 DEFB135Q30KP9 77 aa6.95□□□□□ -1.3
USP54-214ENST00000492357 OR11H2Q8NH07 326 aa6.95□□□□□ -1.3
USP54-214ENST00000492357 TMA7Q9Y2S6 64 aaKnown RBP6.95□□□□□ -1.3
USP54-214ENST00000492357 KIF25-AS1Q9Y6Z4 181 aa6.95□□□□□ -1.3
USP54-214ENST00000492357 U3KQK5 164 aa6.95□□□□□ -1.3
USP54-214ENST00000492357 TRAV4A0A0B4J268 109 aa6.94□□□□□ -1.3
USP54-214ENST00000492357 PLAC8L1A1L4L8 177 aa6.94□□□□□ -1.3
USP54-214ENST00000492357 RS1O15537 224 aa6.94□□□□□ -1.3
USP54-214ENST00000492357 TRGC2P03986 189 aa6.94□□□□□ -1.3
USP54-214ENST00000492357 HTN1P15515 57 aa6.94□□□□□ -1.3
USP54-214ENST00000492357 AZU1P20160 251 aa6.94□□□□□ -1.3
USP54-214ENST00000492357 FABP9Q0Z7S8 132 aa6.94□□□□□ -1.3
USP54-214ENST00000492357 OR10J3Q5JRS4 329 aa6.94□□□□□ -1.3
USP54-214ENST00000492357 ORMDL3Q8N138 153 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms