RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 NINQ8N4C6 2090 aa0.23□□□□□ -2.37
CCDC88A-212ENST00000474059 MPC1LP0DKB6 136 aa0.23□□□□□ -2.37
CCDC88A-212ENST00000474059 SNX29P2Q8IUI4 249 aa0.23□□□□□ -2.37
CCDC88A-212ENST00000474059 AIF1LQ9BQI0 150 aa0.23□□□□□ -2.37
CCDC88A-212ENST00000474059 NOP16Q9Y3C1 178 aaKnown RBP0.23□□□□□ -2.37
CCDC88A-212ENST00000474059 ZNF142P52746 1687 aaPredicted RBP0.23□□□□□ -2.37
CCDC88A-212ENST00000474059 SYNJ1O43426 1573 aa0.23□□□□□ -2.37
CCDC88A-212ENST00000474059 UHRF1BP1LA0JNW5 1464 aa0.22□□□□□ -2.37
CCDC88A-212ENST00000474059 TRAV2A0A0B4J234 112 aa0.22□□□□□ -2.37
CCDC88A-212ENST00000474059 TEX49A0A1B0GTD5 131 aa0.22□□□□□ -2.37
CCDC88A-212ENST00000474059 RBP4P02753 201 aa0.22□□□□□ -2.37
CCDC88A-212ENST00000474059 DBIP07108 87 aaKnown RBP0.22□□□□□ -2.37
CCDC88A-212ENST00000474059 PYYP10082 97 aa0.22□□□□□ -2.37
CCDC88A-212ENST00000474059 MORN2Q502X0 79 aa0.22□□□□□ -2.37
CCDC88A-212ENST00000474059 CLLU1Q5K131 121 aa0.22□□□□□ -2.37
CCDC88A-212ENST00000474059 ATP6V0E2Q8NHE4 81 aa0.22□□□□□ -2.37
CCDC88A-212ENST00000474059 DSCR8Q96T75 97 aa0.22□□□□□ -2.37
CCDC88A-212ENST00000474059 TNCP24821 2201 aa0.22□□□□□ -2.37
CCDC88A-212ENST00000474059 PTPRMP28827 1452 aa0.22□□□□□ -2.37
CCDC88A-212ENST00000474059 TNS1Q9HBL0 1735 aaKnown RBP0.21□□□□□ -2.38
CCDC88A-212ENST00000474059 KDM6BO15054 1643 aa0.21□□□□□ -2.38
CCDC88A-212ENST00000474059 APOC1P02654 83 aa0.21□□□□□ -2.38
CCDC88A-212ENST00000474059 SCGB1A1P11684 91 aa0.21□□□□□ -2.38
CCDC88A-212ENST00000474059 ESPL1Q14674 2120 aa0.21□□□□□ -2.38
CCDC88A-212ENST00000474059 SPINK6Q6UWN8 80 aa0.21□□□□□ -2.38
CCDC88A-212ENST00000474059 DYNLRB2Q8TF09 96 aa0.21□□□□□ -2.38
CCDC88A-212ENST00000474059 PYDC1Q8WXC3 89 aa0.21□□□□□ -2.38
CCDC88A-212ENST00000474059 TMEM141Q96I45 108 aa0.21□□□□□ -2.38
CCDC88A-212ENST00000474059 VPS25Q9BRG1 176 aa0.21□□□□□ -2.38
CCDC88A-212ENST00000474059 LSM2Q9Y333 95 aaKnown RBP0.21□□□□□ -2.38
CCDC88A-212ENST00000474059 KIF13AQ9H1H9 1805 aa0.2□□□□□ -2.38
CCDC88A-212ENST00000474059 YPEL1O60688 119 aa0.2□□□□□ -2.38
CCDC88A-212ENST00000474059 SLC25A6P12236 298 aa0.2□□□□□ -2.38
CCDC88A-212ENST00000474059 NAV3Q8IVL0 2385 aa0.2□□□□□ -2.38
CCDC88A-212ENST00000474059 ERCC6Q03468 1493 aa0.19□□□□□ -2.38
CCDC88A-212ENST00000474059 TRAV12-2A0A075B6T6 113 aa0.19□□□□□ -2.38
CCDC88A-212ENST00000474059 TCRBV3S1A0A5B6 114 aa0.19□□□□□ -2.38
CCDC88A-212ENST00000474059 ZNF670-ZNF695F2Z2N8 137 aa0.19□□□□□ -2.38
CCDC88A-212ENST00000474059 J3QLW9 94 aa0.19□□□□□ -2.38
CCDC88A-212ENST00000474059 M0R2P5 195 aa0.19□□□□□ -2.38
CCDC88A-212ENST00000474059 OR2T2Q6IF00 324 aa0.19□□□□□ -2.38
CCDC88A-212ENST00000474059 ATP11AUNQ6ZP68 121 aa0.19□□□□□ -2.38
CCDC88A-212ENST00000474059 COA4Q9NYJ1 87 aa0.19□□□□□ -2.38
CCDC88A-212ENST00000474059 BET1LQ9NYM9 111 aa0.19□□□□□ -2.38
CCDC88A-212ENST00000474059 GPR98Q8WXG9 6306 aa0.19□□□□□ -2.38
CCDC88A-212ENST00000474059 VIRMAQ69YN4 1812 aaKnown RBP0.19□□□□□ -2.38
CCDC88A-212ENST00000474059 ELOF1P60002 83 aaKnown RBP0.18□□□□□ -2.38
CCDC88A-212ENST00000474059 EMX2Q04743 252 aa0.18□□□□□ -2.38
CCDC88A-212ENST00000474059 PPP1R1CQ8WVI7 109 aa0.18□□□□□ -2.38
CCDC88A-212ENST00000474059 IFI27L1Q96BM0 104 aa0.18□□□□□ -2.38
CCDC88A-212ENST00000474059 PROK2Q9HC23 129 aa0.18□□□□□ -2.38
CCDC88A-212ENST00000474059 KNTC1P50748 2209 aa0.18□□□□□ -2.38
CCDC88A-212ENST00000474059 ARHGEF10O15013 1369 aa0.18□□□□□ -2.38
CCDC88A-212ENST00000474059 OVOS2A0A0J9YW53 1432 aa0.17□□□□□ -2.38
CCDC88A-212ENST00000474059 MCRIP1C9JLW8 97 aa0.17□□□□□ -2.38
CCDC88A-212ENST00000474059 ARPC5O15511 151 aa0.17□□□□□ -2.38
CCDC88A-212ENST00000474059 NCS1P62166 190 aa0.17□□□□□ -2.38
CCDC88A-212ENST00000474059 OVOS2Q6IE36 1432 aa0.17□□□□□ -2.38
CCDC88A-212ENST00000474059 CYP2G1PQ6ZSU1 146 aa0.17□□□□□ -2.38
CCDC88A-212ENST00000474059 VMO1Q7Z5L0 202 aa0.17□□□□□ -2.38
CCDC88A-212ENST00000474059 NDUFA11Q86Y39 141 aa0.17□□□□□ -2.38
CCDC88A-212ENST00000474059 CDK5RAP2Q96SN8 1893 aa0.17□□□□□ -2.38
CCDC88A-212ENST00000474059 FAT4Q6V0I7 4981 aa0.17□□□□□ -2.38
CCDC88A-212ENST00000474059 PLXNA1Q9UIW2 1896 aa0.16□□□□□ -2.38
CCDC88A-212ENST00000474059 CEP152O94986 1710 aa0.16□□□□□ -2.38
CCDC88A-212ENST00000474059 TRBV20-1A0A075B6N2 111 aa0.16□□□□□ -2.38
CCDC88A-212ENST00000474059 CCDC179H3BU77 68 aa0.16□□□□□ -2.38
CCDC88A-212ENST00000474059 M0R129 80 aa0.16□□□□□ -2.38
CCDC88A-212ENST00000474059 CKS1BP61024 79 aa0.16□□□□□ -2.38
CCDC88A-212ENST00000474059 NPC2P61916 151 aa0.16□□□□□ -2.38
CCDC88A-212ENST00000474059 HIST1H1AQ02539 215 aaPredicted RBP0.16□□□□□ -2.38
CCDC88A-212ENST00000474059 MMGT1Q8N4V1 131 aa0.16□□□□□ -2.38
CCDC88A-212ENST00000474059 GSKIPQ9P0R6 139 aa0.16□□□□□ -2.38
CCDC88A-212ENST00000474059 ERG28Q9UKR5 140 aa0.16□□□□□ -2.38
CCDC88A-212ENST00000474059 MUC22E2RYF6 1773 aaPredicted RBP0.16□□□□□ -2.38
CCDC88A-212ENST00000474059 MYH13Q9UKX3 1938 aa0.15□□□□□ -2.39
CCDC88A-212ENST00000474059 FAM236AA0A1B0GUQ0 79 aa0.15□□□□□ -2.39
CCDC88A-212ENST00000474059 FAM236BA0A1B0GV22 79 aa0.15□□□□□ -2.39
CCDC88A-212ENST00000474059 F2Z2F3 143 aa0.15□□□□□ -2.39
CCDC88A-212ENST00000474059 IGLC6P0CF74 106 aa0.15□□□□□ -2.39
CCDC88A-212ENST00000474059 CCL3L1P16619 93 aa0.15□□□□□ -2.39
CCDC88A-212ENST00000474059 PRR15LQ9BU68 103 aa0.15□□□□□ -2.39
CCDC88A-212ENST00000474059 SMIM3Q9BZL3 60 aa0.15□□□□□ -2.39
CCDC88A-212ENST00000474059 BATF3Q9NR55 127 aa0.15□□□□□ -2.39
CCDC88A-212ENST00000474059 SYNE1Q8NF91 8797 aaKnown RBP0.15□□□□□ -2.39
CCDC88A-212ENST00000474059 NRXN2Q9P2S2 1712 aa0.15□□□□□ -2.39
CCDC88A-212ENST00000474059 USP24Q9UPU5 2620 aa0.15□□□□□ -2.39
CCDC88A-212ENST00000474059 LAMC3Q9Y6N6 1575 aa0.15□□□□□ -2.39
CCDC88A-212ENST00000474059 DISP2A7MBM2 1401 aa0.14□□□□□ -2.39
CCDC88A-212ENST00000474059 SOGA1O94964 1423 aa0.14□□□□□ -2.39
CCDC88A-212ENST00000474059 CDK13Q14004 1512 aaKnown RBP0.14□□□□□ -2.39
CCDC88A-212ENST00000474059 A0A087WTM6 91 aa0.14□□□□□ -2.39
CCDC88A-212ENST00000474059 RBAKDNA6NC62 111 aa0.14□□□□□ -2.39
CCDC88A-212ENST00000474059 LINC01545Q5VT33 79 aa0.14□□□□□ -2.39
CCDC88A-212ENST00000474059 MIC13Q5XKP0 118 aa0.14□□□□□ -2.39
CCDC88A-212ENST00000474059 VSTM2AQ8TAG5 236 aa0.14□□□□□ -2.39
CCDC88A-212ENST00000474059 BPESC1Q9GZL8 116 aa0.14□□□□□ -2.39
CCDC88A-212ENST00000474059 PHIPQ8WWQ0 1821 aa0.14□□□□□ -2.39
CCDC88A-212ENST00000474059 PRG4Q92954 1404 aaPredicted RBP0.13□□□□□ -2.39
CCDC88A-212ENST00000474059 GVQW2A0A096LPI5 108 aaPredicted RBP0.13□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms