RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 UFSP1Q6NVU6 142 aa11.76□□□□□ -0.53
SHH-205ENST00000472308 ZFP2Q6ZN57 461 aa11.76□□□□□ -0.53
SHH-205ENST00000472308 OR5C1Q8NGR4 320 aa11.76□□□□□ -0.53
SHH-205ENST00000472308 PGPA6NDG6 321 aa11.75□□□□□ -0.53
SHH-205ENST00000472308 NOL3O60936 208 aaKnown RBP11.75□□□□□ -0.53
SHH-205ENST00000472308 EIF3GO75821 320 aaKnown RBP eCLIP11.75□□□□□ -0.53
SHH-205ENST00000472308 S100A5P33763 92 aa11.75□□□□□ -0.53
SHH-205ENST00000472308 C9orf163Q8N9P6 203 aa11.75□□□□□ -0.53
SHH-205ENST00000472308 NMES1Q9C002 83 aa11.75□□□□□ -0.53
SHH-205ENST00000472308 USP17L23D6RBM5 183 aa11.74□□□□□ -0.53
SHH-205ENST00000472308 PRSS1P07477 247 aa11.74□□□□□ -0.53
SHH-205ENST00000472308 GNG5P63218 68 aa11.74□□□□□ -0.53
SHH-205ENST00000472308 OR10G9Q8NGN4 311 aa11.74□□□□□ -0.53
SHH-205ENST00000472308 CMTM2Q8TAZ6 248 aa11.74□□□□□ -0.53
SHH-205ENST00000472308 SDHCQ99643 169 aaPredicted RBP11.74□□□□□ -0.53
SHH-205ENST00000472308 SEC22CQ9BRL7 303 aa11.74□□□□□ -0.53
SHH-205ENST00000472308 WDR61Q9GZS3 305 aaKnown RBP11.74□□□□□ -0.53
SHH-205ENST00000472308 KHDC3LQ587J8 217 aa11.73□□□□□ -0.53
SHH-205ENST00000472308 ENHOQ6UWT2 76 aa11.73□□□□□ -0.53
SHH-205ENST00000472308 SGK494Q96LW2 274 aa11.73□□□□□ -0.53
SHH-205ENST00000472308 CHCHD7Q9BUK0 85 aa11.73□□□□□ -0.53
SHH-205ENST00000472308 C1orf43Q9BWL3 253 aa11.73□□□□□ -0.53
SHH-205ENST00000472308 JPT2Q9H910 190 aa11.73□□□□□ -0.53
SHH-205ENST00000472308 KCNIP2Q9NS61 270 aa11.73□□□□□ -0.53
SHH-205ENST00000472308 A0A087WX48 190 aa11.72□□□□□ -0.53
SHH-205ENST00000472308 A0A0D9SG52 128 aa11.72□□□□□ -0.53
SHH-205ENST00000472308 A8MWV9 139 aa11.72□□□□□ -0.53
SHH-205ENST00000472308 FGF8P55075 233 aaPredicted RBP11.72□□□□□ -0.53
SHH-205ENST00000472308 ELOBQ15370 118 aa11.72□□□□□ -0.53
SHH-205ENST00000472308 SDIM1Q6ZPB5 146 aa11.72□□□□□ -0.53
SHH-205ENST00000472308 LPAP08519 4548 aa11.72□□□□□ -0.53
SHH-205ENST00000472308 GAS8-AS1O95177 125 aa11.71□□□□□ -0.53
SHH-205ENST00000472308 Q0VG73 95 aa11.71□□□□□ -0.53
SHH-205ENST00000472308 CIRBPQ14011 172 aaKnown RBP11.71□□□□□ -0.53
SHH-205ENST00000472308 DGAT2L7PQ6IED9 249 aa11.71□□□□□ -0.53
SHH-205ENST00000472308 ARL6IP6Q8N6S5 226 aa11.71□□□□□ -0.53
SHH-205ENST00000472308 MBD2Q9UBB5 411 aa11.71□□□□□ -0.53
SHH-205ENST00000472308 CENPXA8MT69 81 aa11.7□□□□□ -0.54
SHH-205ENST00000472308 TAAR5O14804 337 aa11.7□□□□□ -0.54
SHH-205ENST00000472308 GCGP01275 180 aa11.7□□□□□ -0.54
SHH-205ENST00000472308 CNPY1Q3B7I2 92 aa11.7□□□□□ -0.54
SHH-205ENST00000472308 FFAR4Q5NUL3 377 aa11.7□□□□□ -0.54
SHH-205ENST00000472308 DMRTA1Q5VZB9 504 aa11.7□□□□□ -0.54
SHH-205ENST00000472308 FAM74A1Q5RGS3 127 aa11.69□□□□□ -0.54
SHH-205ENST00000472308 PIK3CD-AS1Q5SR53 167 aa11.69□□□□□ -0.54
SHH-205ENST00000472308 ZC2HC1AQ96GY0 325 aa11.69□□□□□ -0.54
SHH-205ENST00000472308 LINC01600Q96MT4 127 aa11.69□□□□□ -0.54
SHH-205ENST00000472308 HLA-DQA1P01909 254 aa11.68□□□□□ -0.54
SHH-205ENST00000472308 TAS2R45P59539 299 aa11.68□□□□□ -0.54
SHH-205ENST00000472308 LGALSLQ3ZCW2 172 aaPredicted RBP11.68□□□□□ -0.54
SHH-205ENST00000472308 OR10G7Q8NGN6 311 aa11.68□□□□□ -0.54
SHH-205ENST00000472308 NDFIP1Q9BT67 221 aa11.68□□□□□ -0.54
SHH-205ENST00000472308 TRAV6A0A075B6T7 132 aa11.67□□□□□ -0.54
SHH-205ENST00000472308 C17orf112F2Z3M2 114 aa11.67□□□□□ -0.54
SHH-205ENST00000472308 IGKV3D-20A0A0C4DH25 116 aa11.66□□□□□ -0.54
SHH-205ENST00000472308 PLA2G10O15496 165 aa11.66□□□□□ -0.54
SHH-205ENST00000472308 IL7P13232 177 aa11.66□□□□□ -0.54
SHH-205ENST00000472308 RPL19P84098 196 aaKnown RBP11.66□□□□□ -0.54
SHH-205ENST00000472308 C15orf54Q8N8G6 183 aa11.66□□□□□ -0.54
SHH-205ENST00000472308 OR2G3Q8NGZ4 309 aa11.66□□□□□ -0.54
SHH-205ENST00000472308 OR5AC2Q9NZP5 309 aa11.66□□□□□ -0.54
SHH-205ENST00000472308 TCRBP04435 133 aa11.65□□□□□ -0.54
SHH-205ENST00000472308 MPV17L2Q567V2 206 aa11.65□□□□□ -0.54
SHH-205ENST00000472308 KCNIP4Q6PIL6 250 aa11.65□□□□□ -0.54
SHH-205ENST00000472308 HSD17B11Q8NBQ5 300 aa11.65□□□□□ -0.54
SHH-205ENST00000472308 NUDT15Q9NV35 164 aa11.65□□□□□ -0.54
SHH-205ENST00000472308 CRPP02741 224 aa11.64□□□□□ -0.55
SHH-205ENST00000472308 KRTAP26-1Q6PEX3 210 aa11.64□□□□□ -0.55
SHH-205ENST00000472308 PSG8Q9UQ74 426 aa11.64□□□□□ -0.55
SHH-205ENST00000472308 MUC2Q02817 5179 aa11.64□□□□□ -0.55
SHH-205ENST00000472308 H0YIZ8 118 aa11.63□□□□□ -0.55
SHH-205ENST00000472308 RHODO00212 210 aa11.63□□□□□ -0.55
SHH-205ENST00000472308 TCRAP04437 139 aa11.63□□□□□ -0.55
SHH-205ENST00000472308 SMUG1Q53HV7 270 aa11.63□□□□□ -0.55
SHH-205ENST00000472308 DPH3P1Q9H4G8 78 aa11.63□□□□□ -0.55
SHH-205ENST00000472308 A0A087WYN8 130 aa11.62□□□□□ -0.55
SHH-205ENST00000472308 SERTM2A0A1B0GWG4 89 aa11.62□□□□□ -0.55
SHH-205ENST00000472308 TMEM262E9PQX1 116 aa11.62□□□□□ -0.55
SHH-205ENST00000472308 PHOX2AO14813 284 aa11.62□□□□□ -0.55
SHH-205ENST00000472308 CHTF8P0CG12 524 aa11.62□□□□□ -0.55
SHH-205ENST00000472308 S100A4P26447 101 aaKnown RBP11.62□□□□□ -0.55
SHH-205ENST00000472308 UBE2D3P61077 147 aa11.62□□□□□ -0.55
SHH-205ENST00000472308 UBE2D2P62837 147 aa11.62□□□□□ -0.55
SHH-205ENST00000472308 FAM74A4Q5TZK3 123 aa11.62□□□□□ -0.55
SHH-205ENST00000472308 PQLC2Q6ZP29 291 aa11.62□□□□□ -0.55
SHH-205ENST00000472308 IL36BQ9NZH7 164 aa11.62□□□□□ -0.55
SHH-205ENST00000472308 LYRM1O43325 122 aa11.61□□□□□ -0.55
SHH-205ENST00000472308 ANGP03950 147 aaKnown RBP11.61□□□□□ -0.55
SHH-205ENST00000472308 MIAQ16674 131 aa11.61□□□□□ -0.55
SHH-205ENST00000472308 SPACA4Q8TDM5 124 aa11.61□□□□□ -0.55
SHH-205ENST00000472308 A0A087WWL8 130 aa11.6□□□□□ -0.55
SHH-205ENST00000472308 TRBV6-8A0A0A6YYG3 113 aa11.6□□□□□ -0.55
SHH-205ENST00000472308 H3BVH4 76 aa11.6□□□□□ -0.55
SHH-205ENST00000472308 HMGB3O15347 200 aaKnown RBP11.6□□□□□ -0.55
SHH-205ENST00000472308 KRTAP10-8P60410 259 aa11.6□□□□□ -0.55
SHH-205ENST00000472308 CNBPP62633 177 aaKnown RBP11.6□□□□□ -0.55
SHH-205ENST00000472308 FLI1Q01543 452 aaPredicted RBP11.6□□□□□ -0.55
SHH-205ENST00000472308 ZFP69Q49AA0 526 aa11.6□□□□□ -0.55
SHH-205ENST00000472308 PRNTQ86SH4 94 aa11.6□□□□□ -0.55
SHH-205ENST00000472308 C5orf17Q8NAS9 161 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 101.6 ms