RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 RNF223E7ERA6 249 aa10.04□□□□□ -0.8
CCDC3-202ENST00000378839 M0R381 172 aa10.04□□□□□ -0.8
CCDC3-202ENST00000378839 RNASE3P12724 160 aaKnown RBP10.04□□□□□ -0.8
CCDC3-202ENST00000378839 NMUP48645 174 aa10.04□□□□□ -0.8
CCDC3-202ENST00000378839 TTTY13Q9BZ97 58 aa10.04□□□□□ -0.8
CCDC3-202ENST00000378839 SLC25A16P16260 332 aa10.04□□□□□ -0.8
CCDC3-202ENST00000378839 DSCR9P59020 149 aa10.03□□□□□ -0.8
CCDC3-202ENST00000378839 NXT2Q9NPJ8 142 aaKnown RBP10.03□□□□□ -0.8
CCDC3-202ENST00000378839 ZNF580Q9UK33 172 aa10.03□□□□□ -0.8
CCDC3-202ENST00000378839 TEX15Q9BXT5 2789 aa10.03□□□□□ -0.8
CCDC3-202ENST00000378839 MUC4Q99102 2169 aa10.03□□□□□ -0.8
CCDC3-202ENST00000378839 GATA3P23771 443 aa10.03□□□□□ -0.8
CCDC3-202ENST00000378839 ODF1Q14990 250 aa10.03□□□□□ -0.8
CCDC3-202ENST00000378839 SAMD13Q5VXD3 122 aa10.03□□□□□ -0.8
CCDC3-202ENST00000378839 PCP2Q8IVA1 136 aa10.03□□□□□ -0.8
CCDC3-202ENST00000378839 HHLA3Q9XRX5 114 aa10.03□□□□□ -0.8
CCDC3-202ENST00000378839 PTPN13Q12923 2485 aa10.03□□□□□ -0.8
CCDC3-202ENST00000378839 ABCA12Q86UK0 2595 aa10.03□□□□□ -0.8
CCDC3-202ENST00000378839 CR1P17927 2039 aa10.03□□□□□ -0.8
CCDC3-202ENST00000378839 TRAV21A0A0B4J279 112 aa10.02□□□□□ -0.8
CCDC3-202ENST00000378839 RPL39LQ96EH5 51 aaKnown RBP10.02□□□□□ -0.8
CCDC3-202ENST00000378839 IGKV2D-26A0A0A0MRZ7 120 aa10.02□□□□□ -0.81
CCDC3-202ENST00000378839 J3QKU1 62 aa10.02□□□□□ -0.81
CCDC3-202ENST00000378839 C14orf178Q8N769 122 aaPredicted RBP10.02□□□□□ -0.81
CCDC3-202ENST00000378839 RASL10AQ92737 203 aa10.02□□□□□ -0.81
CCDC3-202ENST00000378839 ZMAT4Q9H898 229 aa10.02□□□□□ -0.81
CCDC3-202ENST00000378839 DOPEY2Q9Y3R5 2298 aa10.02□□□□□ -0.81
CCDC3-202ENST00000378839 CIDEAO60543 219 aa10.02□□□□□ -0.81
CCDC3-202ENST00000378839 K7EMT4 169 aa10.01□□□□□ -0.81
CCDC3-202ENST00000378839 FSHBP01225 129 aa10.01□□□□□ -0.81
CCDC3-202ENST00000378839 DUX5Q96PT3 197 aa10.01□□□□□ -0.81
CCDC3-202ENST00000378839 K7ERJ3 54 aa10.01□□□□□ -0.81
CCDC3-202ENST00000378839 SMIM17P0DL12 118 aa10.01□□□□□ -0.81
CCDC3-202ENST00000378839 IGHV4-31P0DP07 118 aa10.01□□□□□ -0.81
CCDC3-202ENST00000378839 HIST2H2BDQ6DRA6 164 aa10.01□□□□□ -0.81
CCDC3-202ENST00000378839 BOD1L2Q8IYS8 172 aa10.01□□□□□ -0.81
CCDC3-202ENST00000378839 KLLNB2CW77 178 aa10□□□□□ -0.81
CCDC3-202ENST00000378839 TMEM97Q5BJF2 176 aa10□□□□□ -0.81
CCDC3-202ENST00000378839 C18orf65Q6ZTR6 163 aa10□□□□□ -0.81
CCDC3-202ENST00000378839 SPCS1Q9Y6A9 102 aa10□□□□□ -0.81
CCDC3-202ENST00000378839 DPF1Q92782 380 aa10□□□□□ -0.81
CCDC3-202ENST00000378839 JPT2Q9H910 190 aa10□□□□□ -0.81
CCDC3-202ENST00000378839 ZNF702PQ9H963 129 aa10□□□□□ -0.81
CCDC3-202ENST00000378839 BEX4Q9NWD9 120 aaPredicted RBP10□□□□□ -0.81
CCDC3-202ENST00000378839 TEX48A0A1B0GUV7 120 aa9.99□□□□□ -0.81
CCDC3-202ENST00000378839 COX6B1P14854 86 aa9.99□□□□□ -0.81
CCDC3-202ENST00000378839 AZU1P20160 251 aa9.99□□□□□ -0.81
CCDC3-202ENST00000378839 GCSHP23434 173 aa9.99□□□□□ -0.81
CCDC3-202ENST00000378839 ASIPP42127 132 aa9.99□□□□□ -0.81
CCDC3-202ENST00000378839 IGHV4OR15-8A0A075B7B6 117 aa9.99□□□□□ -0.81
CCDC3-202ENST00000378839 A0A087WW49 117 aa9.99□□□□□ -0.81
CCDC3-202ENST00000378839 LINC00315P59091 139 aa9.99□□□□□ -0.81
CCDC3-202ENST00000378839 LAGE3Q14657 143 aa9.99□□□□□ -0.81
CCDC3-202ENST00000378839 FOXC2Q99958 501 aa9.99□□□□□ -0.81
CCDC3-202ENST00000378839 ZNF688P0C7X2 276 aa9.98□□□□□ -0.81
CCDC3-202ENST00000378839 S100A4P26447 101 aaKnown RBP9.98□□□□□ -0.81
CCDC3-202ENST00000378839 SYNJ2BPP57105 145 aa9.98□□□□□ -0.81
CCDC3-202ENST00000378839 SFTA2Q6UW10 78 aa9.98□□□□□ -0.81
CCDC3-202ENST00000378839 Q6YL49 198 aa9.98□□□□□ -0.81
CCDC3-202ENST00000378839 GTF2H5Q6ZYL4 71 aa9.98□□□□□ -0.81
CCDC3-202ENST00000378839 PHLDA3Q9Y5J5 127 aa9.98□□□□□ -0.81
CCDC3-202ENST00000378839 APCP25054 2843 aa9.98□□□□□ -0.81
CCDC3-202ENST00000378839 PRSS1P07477 247 aa9.98□□□□□ -0.81
CCDC3-202ENST00000378839 ADAMTSL5Q6ZMM2 481 aa9.98□□□□□ -0.81
CCDC3-202ENST00000378839 KIF25-AS1Q9Y6Z4 181 aa9.98□□□□□ -0.81
CCDC3-202ENST00000378839 AGRNO00468 2067 aa9.98□□□□□ -0.81
CCDC3-202ENST00000378839 HOXA3O43365 443 aaPredicted RBP9.98□□□□□ -0.81
CCDC3-202ENST00000378839 IGKV3-20P01619 116 aa9.98□□□□□ -0.81
CCDC3-202ENST00000378839 DEFB104AQ8WTQ1 72 aa9.98□□□□□ -0.81
CCDC3-202ENST00000378839 MRAP2Q96G30 205 aa9.98□□□□□ -0.81
CCDC3-202ENST00000378839 VPREB3Q9UKI3 123 aa9.98□□□□□ -0.81
CCDC3-202ENST00000378839 TRAV12-2A0A075B6T6 113 aa9.97□□□□□ -0.81
CCDC3-202ENST00000378839 TRAV12-3A0A0B4J271 114 aa9.97□□□□□ -0.81
CCDC3-202ENST00000378839 PSMG4Q5JS54 123 aa9.97□□□□□ -0.81
CCDC3-202ENST00000378839 MYOZ3Q8TDC0 251 aa9.97□□□□□ -0.81
CCDC3-202ENST00000378839 SMIM2Q9BVW6 85 aa9.97□□□□□ -0.81
CCDC3-202ENST00000378839 CHD6Q8TD26 2715 aa9.97□□□□□ -0.81
CCDC3-202ENST00000378839 J3QLI3 93 aa9.97□□□□□ -0.81
CCDC3-202ENST00000378839 NEGR1Q7Z3B1 354 aa9.96□□□□□ -0.81
CCDC3-202ENST00000378839 MRPL35Q9NZE8 188 aaKnown RBP9.96□□□□□ -0.81
CCDC3-202ENST00000378839 MGPP08493 103 aa9.96□□□□□ -0.82
CCDC3-202ENST00000378839 KRTAP1-3Q8IUG1 177 aa9.96□□□□□ -0.82
CCDC3-202ENST00000378839 DPH3P1Q9H4G8 78 aa9.96□□□□□ -0.82
CCDC3-202ENST00000378839 TSSC4Q9Y5U2 329 aaPredicted RBP9.96□□□□□ -0.82
CCDC3-202ENST00000378839 TRBV7-9A0A0J9YWB2 115 aa9.96□□□□□ -0.82
CCDC3-202ENST00000378839 G3V4G9 280 aa9.96□□□□□ -0.82
CCDC3-202ENST00000378839 NXPH4O95158 308 aa9.96□□□□□ -0.82
CCDC3-202ENST00000378839 DEFB136Q30KP8 78 aa9.96□□□□□ -0.82
CCDC3-202ENST00000378839 GTSCR1Q86UQ5 136 aa9.96□□□□□ -0.82
CCDC3-202ENST00000378839 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.95□□□□□ -0.82
CCDC3-202ENST00000378839 SUMO2P61956 95 aaKnown RBP9.95□□□□□ -0.82
CCDC3-202ENST00000378839 AMTNQ6UX39 209 aa9.95□□□□□ -0.82
CCDC3-202ENST00000378839 SH2D6Q7Z4S9 175 aa9.95□□□□□ -0.82
CCDC3-202ENST00000378839 NAV2Q8IVL1 2488 aa9.95□□□□□ -0.82
CCDC3-202ENST00000378839 K7EQG2 157 aa9.95□□□□□ -0.82
CCDC3-202ENST00000378839 A0A0J9YX75 114 aa9.94□□□□□ -0.82
CCDC3-202ENST00000378839 IGKCP01834 107 aa9.94□□□□□ -0.82
CCDC3-202ENST00000378839 MED14OSP0DP75 135 aa9.94□□□□□ -0.82
CCDC3-202ENST00000378839 HOXD3P31249 432 aaPredicted RBP9.94□□□□□ -0.82
CCDC3-202ENST00000378839 POM121L12Q8N7R1 296 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms