RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 LSM3P62310 102 aaKnown RBP0.36□□□□□ -2.35
VPS13A-206ENST00000376646 OR8I2Q8N0Y5 310 aa0.36□□□□□ -2.35
VPS13A-206ENST00000376646 SMIM7Q9BQ49 75 aa0.36□□□□□ -2.35
VPS13A-206ENST00000376646 COMMD3Q9UBI1 195 aa0.36□□□□□ -2.35
VPS13A-206ENST00000376646 SYNJ1O43426 1573 aa0.36□□□□□ -2.35
VPS13A-206ENST00000376646 MYH1P12882 1939 aa0.36□□□□□ -2.35
VPS13A-206ENST00000376646 PHLPP1O60346 1717 aa0.36□□□□□ -2.35
VPS13A-206ENST00000376646 CFAP47Q6ZTR5 3102 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 TRPM7Q96QT4 1865 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 A0A0D9SG42 100 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 IFITM5A6NNB3 132 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 UQCRQO14949 82 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 IGKCP01834 107 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 SLC25A5P05141 298 aaKnown RBP0.35□□□□□ -2.35
VPS13A-206ENST00000376646 GYPBP06028 91 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 SDC4P31431 198 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 CKS2P33552 79 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 OR8B8Q15620 311 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 Q6ZS92 163 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 TAC4Q86UU9 113 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 OR8J3Q8NGG0 315 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 OTOSQ8NHW6 89 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 PLAC4Q8WY50 150 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 REV3LO60673 3130 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 NESP48681 1621 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 EYSQ5T1H1 3165 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 ARAP1Q96P48 1450 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 MED23Q9ULK4 1368 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 RANBP2P49792 3224 aaKnown RBP0.35□□□□□ -2.35
VPS13A-206ENST00000376646 TRAV36DV7A0A075B6V5 113 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 TMEM189A5PLL7 270 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 DPM2O94777 84 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 MT-ND4LP03901 98 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 IL7P13232 177 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 PCBD1P61457 104 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 RPS28P62857 69 aaKnown RBP0.35□□□□□ -2.35
VPS13A-206ENST00000376646 IQCJQ1A5X6 159 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 C6orf52Q5T4I8 152 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 Q5XG85 94 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 SPATA8Q6RVD6 105 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 C10orf95Q9H7T3 257 aa0.35□□□□□ -2.35
VPS13A-206ENST00000376646 RBBP6Q7Z6E9 1792 aaKnown RBP0.35□□□□□ -2.35
VPS13A-206ENST00000376646 BCORL1Q5H9F3 1711 aa0.34□□□□□ -2.35
VPS13A-206ENST00000376646 IGHV1-24A0A0C4DH33 117 aa0.34□□□□□ -2.35
VPS13A-206ENST00000376646 A6NN06 94 aa0.34□□□□□ -2.35
VPS13A-206ENST00000376646 ZNF137PP52743 207 aa0.34□□□□□ -2.35
VPS13A-206ENST00000376646 CAV3P56539 151 aa0.34□□□□□ -2.35
VPS13A-206ENST00000376646 PSPHP78330 225 aa0.34□□□□□ -2.35
VPS13A-206ENST00000376646 DR1Q01658 176 aa0.34□□□□□ -2.35
VPS13A-206ENST00000376646 CCSMST1Q4G0I0 132 aa0.34□□□□□ -2.35
VPS13A-206ENST00000376646 HSD17B12Q53GQ0 312 aa0.34□□□□□ -2.35
VPS13A-206ENST00000376646 XAF1Q6GPH4 301 aa0.34□□□□□ -2.35
VPS13A-206ENST00000376646 ATOH7Q8N100 152 aa0.34□□□□□ -2.35
VPS13A-206ENST00000376646 MRPL36Q9P0J6 103 aaKnown RBP0.34□□□□□ -2.35
VPS13A-206ENST00000376646 SPTA1P02549 2419 aa0.34□□□□□ -2.35
VPS13A-206ENST00000376646 OTOGQ6ZRI0 2925 aa0.34□□□□□ -2.36
VPS13A-206ENST00000376646 PCNTO95613 3336 aa0.34□□□□□ -2.36
VPS13A-206ENST00000376646 NF1P21359 2839 aa0.34□□□□□ -2.36
VPS13A-206ENST00000376646 NBPF19A0A087WUL8 3843 aa0.34□□□□□ -2.36
VPS13A-206ENST00000376646 LOC101927531A0A1B0GV80 90 aa0.34□□□□□ -2.36
VPS13A-206ENST00000376646 TMEM30CPA0ZSE6 113 aa0.34□□□□□ -2.36
VPS13A-206ENST00000376646 DEGS1O15121 323 aa0.34□□□□□ -2.36
VPS13A-206ENST00000376646 TPST1O60507 370 aa0.34□□□□□ -2.36
VPS13A-206ENST00000376646 PAEPP09466 180 aa0.34□□□□□ -2.36
VPS13A-206ENST00000376646 LYPD5Q6UWN5 251 aa0.34□□□□□ -2.36
VPS13A-206ENST00000376646 IDO2Q6ZQW0 420 aa0.34□□□□□ -2.36
VPS13A-206ENST00000376646 LINC00208Q96KT6 92 aa0.34□□□□□ -2.36
VPS13A-206ENST00000376646 C19orf12Q9NSK7 152 aa0.34□□□□□ -2.36
VPS13A-206ENST00000376646 CALML5Q9NZT1 146 aa0.34□□□□□ -2.36
VPS13A-206ENST00000376646 NINQ8N4C6 2090 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 KNTC1P50748 2209 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 KIF13AQ9H1H9 1805 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 ANKRD30AQ9BXX3 1397 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 A0A1B0GW64 132 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 A0A1B0GX51 115 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 LY6G6CO95867 125 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 EVI2AP22794 236 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 CMPK1P30085 196 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 FXYD3Q14802 87 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 GLYATL3Q5SZD4 288 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 TMEM244Q5VVB8 128 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 AKAP14Q86UN6 197 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 KMT2AQ03164 3969 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 HIVEP1P15822 2718 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 USH2AO75445 5202 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 ATG2AQ2TAZ0 1938 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 BAZ1AQ9NRL2 1556 aaPredicted RBP0.33□□□□□ -2.36
VPS13A-206ENST00000376646 LOC285556D6RIA3 1793 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 WDR97A6NE52 1622 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 A0A0G2JMM0 328 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 NBDYA0A0U1RRE5 68 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 TNFSF15O95150 251 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 HIST1H1BP16401 226 aaKnown RBP0.33□□□□□ -2.36
VPS13A-206ENST00000376646 ADCYAP1P18509 176 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 KDELR1P24390 212 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 RHOHQ15669 191 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 ZNF56Q15929 161 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 BANF2Q9H503 90 aa0.33□□□□□ -2.36
VPS13A-206ENST00000376646 MRPL35Q9NZE8 188 aaKnown RBP0.33□□□□□ -2.36
VPS13A-206ENST00000376646 METTL1Q9UBP6 276 aaKnown RBP0.33□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms