RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 JOSD1Q15040 202 aaPredicted RBP11.44□□□□□ -0.58
LIMS1-202ENST00000338045 ANXA2RQ3ZCQ2 193 aa11.44□□□□□ -0.58
LIMS1-202ENST00000338045 GFI1BQ5VTD9 330 aa11.44□□□□□ -0.58
LIMS1-202ENST00000338045 M0R2Z0 102 aa11.43□□□□□ -0.58
LIMS1-202ENST00000338045 SPINK13Q1W4C9 94 aa11.43□□□□□ -0.58
LIMS1-202ENST00000338045 RBMY1BA6NDE4 496 aaKnown RBP11.42□□□□□ -0.58
LIMS1-202ENST00000338045 RBMY1EA6NEQ0 496 aaKnown RBP11.42□□□□□ -0.58
LIMS1-202ENST00000338045 RBMY1DP0C7P1 496 aaKnown RBP11.42□□□□□ -0.58
LIMS1-202ENST00000338045 Q0VG73 95 aa11.42□□□□□ -0.58
LIMS1-202ENST00000338045 FAM110AQ9BQ89 295 aa11.42□□□□□ -0.58
LIMS1-202ENST00000338045 TRAV12-3A0A0B4J271 114 aa11.42□□□□□ -0.58
LIMS1-202ENST00000338045 MED14OSP0DP75 135 aa11.42□□□□□ -0.58
LIMS1-202ENST00000338045 NTF3P20783 257 aa11.42□□□□□ -0.58
LIMS1-202ENST00000338045 BEAN1Q3B7T3 259 aa11.42□□□□□ -0.58
LIMS1-202ENST00000338045 TDRG1Q3Y452 100 aa11.42□□□□□ -0.58
LIMS1-202ENST00000338045 MUC21Q5SSG8 566 aa11.42□□□□□ -0.58
LIMS1-202ENST00000338045 HIST3H2BBQ8N257 126 aa11.42□□□□□ -0.58
LIMS1-202ENST00000338045 IGHV4-4A0A075B6R2 117 aa11.41□□□□□ -0.58
LIMS1-202ENST00000338045 TRAV12-2A0A075B6T6 113 aa11.41□□□□□ -0.58
LIMS1-202ENST00000338045 MUC21A0A0G2JKD1 596 aa11.41□□□□□ -0.58
LIMS1-202ENST00000338045 MUC21A0A140T8X8 626 aa11.41□□□□□ -0.58
LIMS1-202ENST00000338045 SRIP30626 198 aa11.41□□□□□ -0.58
LIMS1-202ENST00000338045 PTTG1IPP53801 180 aa11.41□□□□□ -0.58
LIMS1-202ENST00000338045 CMC4P56277 68 aaPredicted RBP11.41□□□□□ -0.58
LIMS1-202ENST00000338045 ZNF664Q8N3J9 261 aa11.41□□□□□ -0.58
LIMS1-202ENST00000338045 ORAOV1Q8WV07 137 aa11.41□□□□□ -0.58
LIMS1-202ENST00000338045 ALKBH7Q9BT30 221 aaPredicted RBP11.41□□□□□ -0.58
LIMS1-202ENST00000338045 TP53TG3Q9ULZ0 132 aa11.41□□□□□ -0.58
LIMS1-202ENST00000338045 LOC102724200A0A096LPH7 203 aaPredicted RBP11.4□□□□□ -0.58
LIMS1-202ENST00000338045 OR11H12B2RN74 326 aa11.4□□□□□ -0.58
LIMS1-202ENST00000338045 CRXO43186 299 aaPredicted RBP11.4□□□□□ -0.58
LIMS1-202ENST00000338045 SCGB1A1P11684 91 aa11.4□□□□□ -0.58
LIMS1-202ENST00000338045 ASIPP42127 132 aa11.4□□□□□ -0.58
LIMS1-202ENST00000338045 TWIST1Q15672 202 aa11.4□□□□□ -0.58
LIMS1-202ENST00000338045 RNF151Q2KHN1 245 aa11.4□□□□□ -0.58
LIMS1-202ENST00000338045 OR10J3Q5JRS4 329 aa11.4□□□□□ -0.58
LIMS1-202ENST00000338045 KCNS1Q96KK3 526 aa11.4□□□□□ -0.58
LIMS1-202ENST00000338045 SCRT2Q9NQ03 307 aa11.4□□□□□ -0.58
LIMS1-202ENST00000338045 A0A1B0GV72 72 aa11.4□□□□□ -0.59
LIMS1-202ENST00000338045 KRTAP24-1Q3LI83 254 aa11.4□□□□□ -0.59
LIMS1-202ENST00000338045 PRR31Q5SQ13 230 aa11.4□□□□□ -0.59
LIMS1-202ENST00000338045 FAM159AQ6UWV7 190 aa11.4□□□□□ -0.59
LIMS1-202ENST00000338045 OR10AG1Q8NH19 301 aa11.4□□□□□ -0.59
LIMS1-202ENST00000338045 MSRB1Q9NZV6 116 aa11.4□□□□□ -0.59
LIMS1-202ENST00000338045 H3BVH4 76 aa11.39□□□□□ -0.59
LIMS1-202ENST00000338045 GNRH2O43555 120 aa11.39□□□□□ -0.59
LIMS1-202ENST00000338045 CACNG7P62955 275 aa11.39□□□□□ -0.59
LIMS1-202ENST00000338045 TMEM191AQ9H0A3 160 aa11.39□□□□□ -0.59
LIMS1-202ENST00000338045 RNASE3P12724 160 aaKnown RBP11.38□□□□□ -0.59
LIMS1-202ENST00000338045 INSL3P51460 131 aa11.38□□□□□ -0.59
LIMS1-202ENST00000338045 FAM104BQ5XKR9 115 aa11.38□□□□□ -0.59
LIMS1-202ENST00000338045 C19orf73Q9NVV2 129 aa11.38□□□□□ -0.59
LIMS1-202ENST00000338045 TENM1Q9UKZ4 2725 aa11.38□□□□□ -0.59
LIMS1-202ENST00000338045 S100A4P26447 101 aaKnown RBP11.38□□□□□ -0.59
LIMS1-202ENST00000338045 LINC00310P59036 64 aa11.38□□□□□ -0.59
LIMS1-202ENST00000338045 COL5A1-AS1Q5SY13 56 aa11.38□□□□□ -0.59
LIMS1-202ENST00000338045 TMEM256Q8N2U0 113 aa11.38□□□□□ -0.59
LIMS1-202ENST00000338045 C18orf32Q8TCD1 76 aa11.38□□□□□ -0.59
LIMS1-202ENST00000338045 ESDP10768 282 aa11.37□□□□□ -0.59
LIMS1-202ENST00000338045 TRPT1Q86TN4 253 aaKnown RBP11.37□□□□□ -0.59
LIMS1-202ENST00000338045 SPATA3Q8NHX4 192 aa11.37□□□□□ -0.59
LIMS1-202ENST00000338045 ATRQ13535 2644 aa11.37□□□□□ -0.59
LIMS1-202ENST00000338045 TEP1Q99973 2627 aaKnown RBP11.37□□□□□ -0.59
LIMS1-202ENST00000338045 IGHV1OR15-1A0A075B7D0 117 aa11.36□□□□□ -0.59
LIMS1-202ENST00000338045 CD7P09564 240 aa11.36□□□□□ -0.59
LIMS1-202ENST00000338045 RBMY1A1P0DJD3 496 aaKnown RBP11.36□□□□□ -0.59
LIMS1-202ENST00000338045 RBMY1CP0DJD4 496 aa11.36□□□□□ -0.59
LIMS1-202ENST00000338045 FXYD7P58549 80 aa11.36□□□□□ -0.59
LIMS1-202ENST00000338045 RBMY1FQ15415 496 aaKnown RBP11.36□□□□□ -0.59
LIMS1-202ENST00000338045 PDZD11Q5EBL8 140 aa11.36□□□□□ -0.59
LIMS1-202ENST00000338045 STHQ8IWL8 128 aa11.36□□□□□ -0.59
LIMS1-202ENST00000338045 AMN1Q8IY45 258 aa11.36□□□□□ -0.59
LIMS1-202ENST00000338045 NUPR1O60356 82 aa11.36□□□□□ -0.59
LIMS1-202ENST00000338045 C9orf66Q5T8R8 295 aa11.36□□□□□ -0.59
LIMS1-202ENST00000338045 SPANXN1Q5VSR9 72 aa11.36□□□□□ -0.59
LIMS1-202ENST00000338045 BAGE3Q86Y29 109 aa11.36□□□□□ -0.59
LIMS1-202ENST00000338045 HIST1H2BLQ99880 126 aa11.36□□□□□ -0.59
LIMS1-202ENST00000338045 U3KQK5 164 aa11.36□□□□□ -0.59
LIMS1-202ENST00000338045 SERF1AO75920 110 aa11.35□□□□□ -0.59
LIMS1-202ENST00000338045 NXPH4O95158 308 aa11.35□□□□□ -0.59
LIMS1-202ENST00000338045 PRIMA1Q86XR5 153 aa11.35□□□□□ -0.59
LIMS1-202ENST00000338045 C20orf144Q9BQM9 153 aa11.35□□□□□ -0.59
LIMS1-202ENST00000338045 IGHV3-16A0A0C4DH30 117 aa11.34□□□□□ -0.59
LIMS1-202ENST00000338045 KIR2DL5BA0A0G2JN68 375 aa11.34□□□□□ -0.59
LIMS1-202ENST00000338045 KIR2DL5BA0A0G2JPC4 375 aa11.34□□□□□ -0.59
LIMS1-202ENST00000338045 AMBPP02760 352 aa11.34□□□□□ -0.59
LIMS1-202ENST00000338045 KIR2DL5AQ8N109 375 aa11.34□□□□□ -0.59
LIMS1-202ENST00000338045 Q8N1Y9 231 aa11.34□□□□□ -0.59
LIMS1-202ENST00000338045 WFDC9Q8NEX5 89 aa11.34□□□□□ -0.59
LIMS1-202ENST00000338045 RNF185Q96GF1 192 aa11.34□□□□□ -0.59
LIMS1-202ENST00000338045 PHLDA3Q9Y5J5 127 aa11.34□□□□□ -0.59
LIMS1-202ENST00000338045 MRPL51Q4U2R6 128 aaKnown RBP11.34□□□□□ -0.59
LIMS1-202ENST00000338045 C9orf85Q96MD7 179 aa11.34□□□□□ -0.59
LIMS1-202ENST00000338045 RCHY1Q96PM5 261 aa11.34□□□□□ -0.59
LIMS1-202ENST00000338045 ZNF747Q9BV97 191 aa11.34□□□□□ -0.59
LIMS1-202ENST00000338045 TIMM8BQ9Y5J9 83 aaPredicted RBP11.34□□□□□ -0.59
LIMS1-202ENST00000338045 EVI2AP22794 236 aa11.33□□□□□ -0.6
LIMS1-202ENST00000338045 UBE2V1Q13404 147 aa11.33□□□□□ -0.6
LIMS1-202ENST00000338045 IQCJQ1A5X6 159 aa11.33□□□□□ -0.6
LIMS1-202ENST00000338045 LINC00467Q9BRT7 94 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 98.4 ms