RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 TPPP3Q9BW30 176 aa12.05□□□□□ -0.48
PDLIM1-201ENST00000329399 C11orf21Q9P2W6 132 aa12.05□□□□□ -0.48
PDLIM1-201ENST00000329399 U3KQK5 164 aa12.05□□□□□ -0.48
PDLIM1-201ENST00000329399 CSMD3Q7Z407 3707 aa12.05□□□□□ -0.48
PDLIM1-201ENST00000329399 ZNF324O75467 553 aaPredicted RBP12.04□□□□□ -0.48
PDLIM1-201ENST00000329399 ZNF124Q15973 351 aa12.04□□□□□ -0.48
PDLIM1-201ENST00000329399 ODF3L2Q3SX64 289 aa12.04□□□□□ -0.48
PDLIM1-201ENST00000329399 TM2D3Q9BRN9 247 aa12.04□□□□□ -0.48
PDLIM1-201ENST00000329399 KMT2CQ8NEZ4 4911 aaKnown RBP12.03□□□□□ -0.48
PDLIM1-201ENST00000329399 S100A4P26447 101 aaKnown RBP12.03□□□□□ -0.48
PDLIM1-201ENST00000329399 DEFB1P60022 68 aa12.03□□□□□ -0.48
PDLIM1-201ENST00000329399 NUTF2P61970 127 aaKnown RBP12.03□□□□□ -0.48
PDLIM1-201ENST00000329399 TMEM191AQ9H0A3 160 aa12.03□□□□□ -0.48
PDLIM1-201ENST00000329399 RETNQ9HD89 108 aa12.03□□□□□ -0.48
PDLIM1-201ENST00000329399 NTF3P20783 257 aa12.02□□□□□ -0.48
PDLIM1-201ENST00000329399 SLAQ13239 276 aa12.02□□□□□ -0.48
PDLIM1-201ENST00000329399 TWIST1Q15672 202 aa12.02□□□□□ -0.48
PDLIM1-201ENST00000329399 LINC00467Q9BRT7 94 aa12.02□□□□□ -0.48
PDLIM1-201ENST00000329399 LOC102724200A0A096LPH7 203 aaPredicted RBP12.02□□□□□ -0.49
PDLIM1-201ENST00000329399 GRIFINA4D1Z8 144 aa12.02□□□□□ -0.49
PDLIM1-201ENST00000329399 ESDP10768 282 aa12.02□□□□□ -0.49
PDLIM1-201ENST00000329399 S100A2P29034 98 aa12.02□□□□□ -0.49
PDLIM1-201ENST00000329399 ANXA2RQ3ZCQ2 193 aa12.02□□□□□ -0.49
PDLIM1-201ENST00000329399 GFI1BQ5VTD9 330 aa12.02□□□□□ -0.49
PDLIM1-201ENST00000329399 STHQ8IWL8 128 aa12.02□□□□□ -0.49
PDLIM1-201ENST00000329399 RCHY1Q96PM5 261 aa12.02□□□□□ -0.49
PDLIM1-201ENST00000329399 SCRT2Q9NQ03 307 aa12.02□□□□□ -0.49
PDLIM1-201ENST00000329399 PPBPP02775 128 aa12.01□□□□□ -0.49
PDLIM1-201ENST00000329399 FAM104BQ5XKR9 115 aa12.01□□□□□ -0.49
PDLIM1-201ENST00000329399 PACRGQ96M98 296 aaPredicted RBP12.01□□□□□ -0.49
PDLIM1-201ENST00000329399 ALKBH7Q9BT30 221 aaPredicted RBP12.01□□□□□ -0.49
PDLIM1-201ENST00000329399 TRGV11A0A075B6L2 103 aa12□□□□□ -0.49
PDLIM1-201ENST00000329399 IGHV1OR15-1A0A075B7D0 117 aa12□□□□□ -0.49
PDLIM1-201ENST00000329399 TRAV12-3A0A0B4J271 114 aa12□□□□□ -0.49
PDLIM1-201ENST00000329399 KNCNA6PVL3 124 aa12□□□□□ -0.49
PDLIM1-201ENST00000329399 J3KRW8 73 aa12□□□□□ -0.49
PDLIM1-201ENST00000329399 SRIP30626 198 aa12□□□□□ -0.49
PDLIM1-201ENST00000329399 SPANXN1Q5VSR9 72 aa12□□□□□ -0.49
PDLIM1-201ENST00000329399 BAGE3Q86Y29 109 aa12□□□□□ -0.49
PDLIM1-201ENST00000329399 HIST3H2BBQ8N257 126 aa12□□□□□ -0.49
PDLIM1-201ENST00000329399 NAGKQ9UJ70 344 aa12□□□□□ -0.49
PDLIM1-201ENST00000329399 LAMTOR2Q9Y2Q5 125 aa12□□□□□ -0.49
PDLIM1-201ENST00000329399 AGRNO00468 2067 aa11.99□□□□□ -0.49
PDLIM1-201ENST00000329399 SPINK13Q1W4C9 94 aa11.99□□□□□ -0.49
PDLIM1-201ENST00000329399 TMEM256Q8N2U0 113 aa11.99□□□□□ -0.49
PDLIM1-201ENST00000329399 PHLDA3Q9Y5J5 127 aa11.99□□□□□ -0.49
PDLIM1-201ENST00000329399 STARD9Q9P2P6 4700 aa11.99□□□□□ -0.49
PDLIM1-201ENST00000329399 M0R2Z0 102 aa11.98□□□□□ -0.49
PDLIM1-201ENST00000329399 IGKV3-20P01619 116 aa11.98□□□□□ -0.49
PDLIM1-201ENST00000329399 TRPT1Q86TN4 253 aaKnown RBP11.98□□□□□ -0.49
PDLIM1-201ENST00000329399 TMEM18Q96B42 140 aa11.98□□□□□ -0.49
PDLIM1-201ENST00000329399 TP53TG3Q9ULZ0 132 aa11.98□□□□□ -0.49
PDLIM1-201ENST00000329399 NXPH4O95158 308 aa11.97□□□□□ -0.49
PDLIM1-201ENST00000329399 INSP01308 110 aa11.97□□□□□ -0.49
PDLIM1-201ENST00000329399 KIAA1644Q3SXP7 199 aa11.97□□□□□ -0.49
PDLIM1-201ENST00000329399 MORN3Q6PF18 240 aaPredicted RBP11.97□□□□□ -0.49
PDLIM1-201ENST00000329399 H3BVH4 76 aa11.96□□□□□ -0.49
PDLIM1-201ENST00000329399 PIK3CD-AS1Q5SR53 167 aa11.96□□□□□ -0.49
PDLIM1-201ENST00000329399 MUC21Q5SSG8 566 aa11.96□□□□□ -0.49
PDLIM1-201ENST00000329399 ORMDL3Q8N138 153 aa11.96□□□□□ -0.49
PDLIM1-201ENST00000329399 C18orf32Q8TCD1 76 aa11.96□□□□□ -0.49
PDLIM1-201ENST00000329399 WWC2-AS2Q96NR7 200 aa11.96□□□□□ -0.49
PDLIM1-201ENST00000329399 C1QTNF4Q9BXJ3 329 aa11.96□□□□□ -0.49
PDLIM1-201ENST00000329399 ZMAT4Q9H898 229 aa11.96□□□□□ -0.49
PDLIM1-201ENST00000329399 RPL35AP18077 110 aaKnown RBP11.95□□□□□ -0.5
PDLIM1-201ENST00000329399 KIR3DS1Q14943 382 aa11.95□□□□□ -0.5
PDLIM1-201ENST00000329399 SYT8Q8NBV8 401 aa11.95□□□□□ -0.5
PDLIM1-201ENST00000329399 PTH2Q96A98 100 aa11.95□□□□□ -0.5
PDLIM1-201ENST00000329399 TENM2Q9NT68 2774 aa11.95□□□□□ -0.5
PDLIM1-201ENST00000329399 CRXO43186 299 aaPredicted RBP11.95□□□□□ -0.5
PDLIM1-201ENST00000329399 GNRH2O43555 120 aa11.95□□□□□ -0.5
PDLIM1-201ENST00000329399 RNASE3P12724 160 aaKnown RBP11.95□□□□□ -0.5
PDLIM1-201ENST00000329399 OR10AG1Q8NH19 301 aa11.95□□□□□ -0.5
PDLIM1-201ENST00000329399 CHCHD1Q96BP2 118 aaKnown RBP11.95□□□□□ -0.5
PDLIM1-201ENST00000329399 TRAV12-2A0A075B6T6 113 aa11.94□□□□□ -0.5
PDLIM1-201ENST00000329399 IGHV3-16A0A0C4DH30 117 aa11.94□□□□□ -0.5
PDLIM1-201ENST00000329399 PPP1R17O96001 155 aa11.94□□□□□ -0.5
PDLIM1-201ENST00000329399 PMCHP20382 165 aa11.94□□□□□ -0.5
PDLIM1-201ENST00000329399 AKR1D1P51857 326 aa11.94□□□□□ -0.5
PDLIM1-201ENST00000329399 Q6ZQT7 251 aa11.94□□□□□ -0.5
PDLIM1-201ENST00000329399 C9orf85Q96MD7 179 aa11.94□□□□□ -0.5
PDLIM1-201ENST00000329399 AP1S3Q96PC3 154 aa11.94□□□□□ -0.5
PDLIM1-201ENST00000329399 SPATA25Q9BR10 227 aa11.94□□□□□ -0.5
PDLIM1-201ENST00000329399 NDUFAF3Q9BU61 184 aa11.94□□□□□ -0.5
PDLIM1-201ENST00000329399 RAB4AP20338 218 aa11.93□□□□□ -0.5
PDLIM1-201ENST00000329399 MRAP2Q96G30 205 aa11.93□□□□□ -0.5
PDLIM1-201ENST00000329399 DPH3P1Q9H4G8 78 aa11.93□□□□□ -0.5
PDLIM1-201ENST00000329399 SERF1AO75920 110 aa11.92□□□□□ -0.5
PDLIM1-201ENST00000329399 CKS2P33552 79 aa11.92□□□□□ -0.5
PDLIM1-201ENST00000329399 MRPL51Q4U2R6 128 aaKnown RBP11.92□□□□□ -0.5
PDLIM1-201ENST00000329399 AMN1Q8IY45 258 aa11.92□□□□□ -0.5
PDLIM1-201ENST00000329399 HIST1H2BLQ99880 126 aa11.92□□□□□ -0.5
PDLIM1-201ENST00000329399 OVOL2Q9BRP0 275 aa11.92□□□□□ -0.5
PDLIM1-201ENST00000329399 EDA2RQ9HAV5 297 aa11.92□□□□□ -0.5
PDLIM1-201ENST00000329399 CBY3A6NI87 242 aa11.91□□□□□ -0.5
PDLIM1-201ENST00000329399 PRELID3AQ96N28 172 aa11.91□□□□□ -0.5
PDLIM1-201ENST00000329399 SPXQ9BT56 116 aa11.91□□□□□ -0.5
PDLIM1-201ENST00000329399 MSRB1Q9NZV6 116 aa11.91□□□□□ -0.5
PDLIM1-201ENST00000329399 SMIM6P0DI80 62 aa11.9□□□□□ -0.5
PDLIM1-201ENST00000329399 SMIM17P0DL12 118 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms