RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 TSKUQ8WUA8 353 aa10.71□□□□□ -0.69
VRK3-212ENST00000596814 SMCO4Q9NRQ5 59 aa10.71□□□□□ -0.69
VRK3-212ENST00000596814 DNAH3Q8TD57 4116 aa10.71□□□□□ -0.7
VRK3-212ENST00000596814 NOTCH1P46531 2555 aa10.7□□□□□ -0.7
VRK3-212ENST00000596814 CXorf65A6NEN9 183 aa10.7□□□□□ -0.7
VRK3-212ENST00000596814 GZMBP10144 247 aa10.7□□□□□ -0.7
VRK3-212ENST00000596814 APOC4P55056 127 aa10.7□□□□□ -0.7
VRK3-212ENST00000596814 ANXA2RQ3ZCQ2 193 aa10.7□□□□□ -0.7
VRK3-212ENST00000596814 KIR2DL5BA0A0G2JN68 375 aa10.7□□□□□ -0.7
VRK3-212ENST00000596814 KIR2DL5BA0A0G2JPC4 375 aa10.7□□□□□ -0.7
VRK3-212ENST00000596814 KIR2DL5AQ8N109 375 aa10.7□□□□□ -0.7
VRK3-212ENST00000596814 KIR2DL5BQ8NHK3 375 aa10.7□□□□□ -0.7
VRK3-212ENST00000596814 IMMP2LQ96T52 175 aa10.7□□□□□ -0.7
VRK3-212ENST00000596814 IGHV1OR15-1A0A075B7D0 117 aa10.69□□□□□ -0.7
VRK3-212ENST00000596814 SMIM27A0A1W2PRY6 76 aa10.69□□□□□ -0.7
VRK3-212ENST00000596814 A8MZ25 164 aa10.69□□□□□ -0.7
VRK3-212ENST00000596814 S100PP25815 95 aa10.69□□□□□ -0.7
VRK3-212ENST00000596814 TCL1AP56279 114 aa10.69□□□□□ -0.7
VRK3-212ENST00000596814 KCNIP4Q6PIL6 250 aa10.69□□□□□ -0.7
VRK3-212ENST00000596814 TMEM256Q8N2U0 113 aa10.69□□□□□ -0.7
VRK3-212ENST00000596814 KCNS1Q96KK3 526 aa10.69□□□□□ -0.7
VRK3-212ENST00000596814 NEU1Q99519 415 aa10.69□□□□□ -0.7
VRK3-212ENST00000596814 PYGO2Q9BRQ0 406 aa10.69□□□□□ -0.7
VRK3-212ENST00000596814 TMEM208Q9BTX3 173 aa10.69□□□□□ -0.7
VRK3-212ENST00000596814 GFRA4Q9GZZ7 299 aa10.69□□□□□ -0.7
VRK3-212ENST00000596814 GOLT1BQ9Y3E0 138 aa10.69□□□□□ -0.7
VRK3-212ENST00000596814 URGCP-MRPS24S4R325 110 aa10.69□□□□□ -0.7
VRK3-212ENST00000596814 NBEAL1Q6ZS30 2694 aa10.68□□□□□ -0.7
VRK3-212ENST00000596814 GRIFINA4D1Z8 144 aa10.68□□□□□ -0.7
VRK3-212ENST00000596814 CXCL1P09341 107 aa10.68□□□□□ -0.7
VRK3-212ENST00000596814 TDRG1Q3Y452 100 aa10.68□□□□□ -0.7
VRK3-212ENST00000596814 C1orf158Q8N1D5 194 aa10.68□□□□□ -0.7
VRK3-212ENST00000596814 LINC01587Q99440 93 aa10.68□□□□□ -0.7
VRK3-212ENST00000596814 FAM231BA6NCW3 169 aa10.67□□□□□ -0.7
VRK3-212ENST00000596814 HIGD1CA8MV81 97 aa10.67□□□□□ -0.7
VRK3-212ENST00000596814 TYMSP04818 313 aa10.67□□□□□ -0.7
VRK3-212ENST00000596814 ZNF575Q86XF7 245 aa10.67□□□□□ -0.7
VRK3-212ENST00000596814 CSNK1G2-AS1Q8NCQ2 148 aa10.67□□□□□ -0.7
VRK3-212ENST00000596814 GTSF1Q8WW33 167 aa10.67□□□□□ -0.7
VRK3-212ENST00000596814 NAT8BQ9UHF3 227 aa10.67□□□□□ -0.7
VRK3-212ENST00000596814 IGHV3OR16-12A0A075B7B8 117 aa10.67□□□□□ -0.7
VRK3-212ENST00000596814 CBY3A6NI87 242 aa10.67□□□□□ -0.7
VRK3-212ENST00000596814 ASIPP42127 132 aa10.67□□□□□ -0.7
VRK3-212ENST00000596814 FAM3BP58499 235 aaPredicted RBP10.67□□□□□ -0.7
VRK3-212ENST00000596814 DNHD1Q96M86 4753 aa10.67□□□□□ -0.7
VRK3-212ENST00000596814 A0A1W2PPQ1 181 aa10.66□□□□□ -0.7
VRK3-212ENST00000596814 GNRH2O43555 120 aa10.66□□□□□ -0.7
VRK3-212ENST00000596814 PRB2P02812 416 aaPredicted RBP10.66□□□□□ -0.7
VRK3-212ENST00000596814 FER1L6-AS1Q8NA97 138 aa10.66□□□□□ -0.7
VRK3-212ENST00000596814 LINC00467Q9BRT7 94 aa10.66□□□□□ -0.7
VRK3-212ENST00000596814 TPPP3Q9BW30 176 aa10.66□□□□□ -0.7
VRK3-212ENST00000596814 TRGV11A0A075B6L2 103 aa10.65□□□□□ -0.7
VRK3-212ENST00000596814 UBE2CO00762 179 aa10.65□□□□□ -0.7
VRK3-212ENST00000596814 IGLC6P0CF74 106 aa10.65□□□□□ -0.7
VRK3-212ENST00000596814 HTN1P15515 57 aa10.65□□□□□ -0.7
VRK3-212ENST00000596814 S100A4P26447 101 aaKnown RBP10.65□□□□□ -0.7
VRK3-212ENST00000596814 FOXA3P55318 350 aaPredicted RBP10.65□□□□□ -0.7
VRK3-212ENST00000596814 ELOBQ15370 118 aa10.65□□□□□ -0.7
VRK3-212ENST00000596814 NUP35Q8NFH5 326 aa10.65□□□□□ -0.7
VRK3-212ENST00000596814 TP53TG3Q9ULZ0 132 aa10.65□□□□□ -0.7
VRK3-212ENST00000596814 H3BVH4 76 aa10.64□□□□□ -0.71
VRK3-212ENST00000596814 FRMD6-AS1P0C7T7 363 aa10.64□□□□□ -0.71
VRK3-212ENST00000596814 DNLZQ5SXM8 178 aa10.64□□□□□ -0.71
VRK3-212ENST00000596814 ZNF705AQ6ZN79 300 aaPredicted RBP10.64□□□□□ -0.71
VRK3-212ENST00000596814 PGLYRP4Q96LB8 373 aa10.64□□□□□ -0.71
VRK3-212ENST00000596814 TRAV9-1A0A075B6T8 112 aa10.64□□□□□ -0.71
VRK3-212ENST00000596814 K7EIL1 84 aa10.64□□□□□ -0.71
VRK3-212ENST00000596814 CTRLP40313 264 aa10.64□□□□□ -0.71
VRK3-212ENST00000596814 DEFB135Q30KP9 77 aa10.64□□□□□ -0.71
VRK3-212ENST00000596814 BTF3L4Q96K17 158 aa10.64□□□□□ -0.71
VRK3-212ENST00000596814 YPEL4Q96NS1 127 aa10.64□□□□□ -0.71
VRK3-212ENST00000596814 IGHV3-16A0A0C4DH30 117 aa10.63□□□□□ -0.71
VRK3-212ENST00000596814 ARMS2P0C7Q2 107 aa10.63□□□□□ -0.71
VRK3-212ENST00000596814 MED14OSP0DP75 135 aa10.63□□□□□ -0.71
VRK3-212ENST00000596814 LYZL1Q6UWQ5 148 aa10.63□□□□□ -0.71
VRK3-212ENST00000596814 TIMM8BQ9Y5J9 83 aaPredicted RBP10.63□□□□□ -0.71
VRK3-212ENST00000596814 TGIF2-C20orf24A0A0A6YYL0 155 aa10.62□□□□□ -0.71
VRK3-212ENST00000596814 F2Z2F3 143 aa10.62□□□□□ -0.71
VRK3-212ENST00000596814 SNAI2O43623 268 aa10.62□□□□□ -0.71
VRK3-212ENST00000596814 SPINK4O60575 86 aa10.62□□□□□ -0.71
VRK3-212ENST00000596814 PRM2P04554 102 aa10.62□□□□□ -0.71
VRK3-212ENST00000596814 OR5AL1P0C617 328 aa10.62□□□□□ -0.71
VRK3-212ENST00000596814 RNASE3P12724 160 aaKnown RBP10.62□□□□□ -0.71
VRK3-212ENST00000596814 ZNF415Q09FC8 603 aa10.62□□□□□ -0.71
VRK3-212ENST00000596814 BORCS7Q96B45 105 aa10.62□□□□□ -0.71
VRK3-212ENST00000596814 TRBV24-1A0A075B6N3 115 aa10.61□□□□□ -0.71
VRK3-212ENST00000596814 Q6ZWC4 215 aa10.61□□□□□ -0.71
VRK3-212ENST00000596814 RCHY1Q96PM5 261 aa10.61□□□□□ -0.71
VRK3-212ENST00000596814 SSBP4Q9BWG4 385 aaPredicted RBP10.61□□□□□ -0.71
VRK3-212ENST00000596814 MDFICQ9P1T7 246 aa10.61□□□□□ -0.71
VRK3-212ENST00000596814 A0A1B0GUT8 65 aa10.61□□□□□ -0.71
VRK3-212ENST00000596814 RRN3P1Q2M238 152 aa10.61□□□□□ -0.71
VRK3-212ENST00000596814 MRPL54Q6P161 138 aaKnown RBP10.61□□□□□ -0.71
VRK3-212ENST00000596814 TMEM263Q8WUH6 116 aaKnown RBP10.61□□□□□ -0.71
VRK3-212ENST00000596814 C9orf85Q96MD7 179 aa10.61□□□□□ -0.71
VRK3-212ENST00000596814 SCRT2Q9NQ03 307 aa10.61□□□□□ -0.71
VRK3-212ENST00000596814 MUC21A0A0G2JKD1 596 aa10.6□□□□□ -0.71
VRK3-212ENST00000596814 MUC21A0A140T8X8 626 aa10.6□□□□□ -0.71
VRK3-212ENST00000596814 AZU1P20160 251 aa10.6□□□□□ -0.71
VRK3-212ENST00000596814 ATP5L2Q7Z4Y8 100 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms