RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 LINC01559Q495D7 138 aa18.32■□□□□ 0.52
SHMT1-207ENST00000580002 C1orf158Q8N1D5 194 aa18.31■□□□□ 0.52
SHMT1-207ENST00000580002 YPEL4Q96NS1 127 aa18.31■□□□□ 0.52
SHMT1-207ENST00000580002 NEU1Q99519 415 aa18.31■□□□□ 0.52
SHMT1-207ENST00000580002 SMCO4Q9NRQ5 59 aa18.31■□□□□ 0.52
SHMT1-207ENST00000580002 SMIM27A0A1W2PRY6 76 aa18.3■□□□□ 0.52
SHMT1-207ENST00000580002 SPINK4O60575 86 aa18.3■□□□□ 0.52
SHMT1-207ENST00000580002 TSKUQ8WUA8 353 aa18.3■□□□□ 0.52
SHMT1-207ENST00000580002 TUBA4BQ9H853 241 aa18.3■□□□□ 0.52
SHMT1-207ENST00000580002 TGIF2-C20orf24A0A0A6YYL0 155 aa18.29■□□□□ 0.52
SHMT1-207ENST00000580002 MUC21A0A0G2JKD1 596 aa18.29■□□□□ 0.52
SHMT1-207ENST00000580002 MUC21A0A140T8X8 626 aa18.29■□□□□ 0.52
SHMT1-207ENST00000580002 FRMD6-AS1P0C7T7 363 aa18.29■□□□□ 0.52
SHMT1-207ENST00000580002 HTN1P15515 57 aa18.29■□□□□ 0.52
SHMT1-207ENST00000580002 IGHV3OR16-12A0A075B7B8 117 aa18.28■□□□□ 0.52
SHMT1-207ENST00000580002 NUTF2P61970 127 aaKnown RBP18.28■□□□□ 0.52
SHMT1-207ENST00000580002 ELOBQ15370 118 aa18.28■□□□□ 0.52
SHMT1-207ENST00000580002 CSTL1Q9H114 145 aa18.28■□□□□ 0.52
SHMT1-207ENST00000580002 NBEAL2Q6ZNJ1 2754 aa18.28■□□□□ 0.52
SHMT1-207ENST00000580002 A8MWL6 223 aa18.27■□□□□ 0.52
SHMT1-207ENST00000580002 CXCL1P09341 107 aa18.27■□□□□ 0.52
SHMT1-207ENST00000580002 CSNK1G2-AS1Q8NCQ2 148 aa18.27■□□□□ 0.52
SHMT1-207ENST00000580002 PGLYRP4Q96LB8 373 aa18.27■□□□□ 0.52
SHMT1-207ENST00000580002 LOC102724200A0A096LPH7 203 aaPredicted RBP18.27■□□□□ 0.51
SHMT1-207ENST00000580002 HIGD1CA8MV81 97 aa18.27■□□□□ 0.51
SHMT1-207ENST00000580002 SSTP61278 116 aa18.27■□□□□ 0.51
SHMT1-207ENST00000580002 CT83Q5H943 113 aa18.27■□□□□ 0.51
SHMT1-207ENST00000580002 NUP35Q8NFH5 326 aa18.27■□□□□ 0.51
SHMT1-207ENST00000580002 TPPP3Q9BW30 176 aa18.27■□□□□ 0.51
SHMT1-207ENST00000580002 INSP01308 110 aa18.26■□□□□ 0.51
SHMT1-207ENST00000580002 TYMSP04818 313 aa18.26■□□□□ 0.51
SHMT1-207ENST00000580002 IGHV1OR15-1A0A075B7D0 117 aa18.25■□□□□ 0.51
SHMT1-207ENST00000580002 A0A1W2PPQ1 181 aa18.25■□□□□ 0.51
SHMT1-207ENST00000580002 FAM159AQ6UWV7 190 aa18.25■□□□□ 0.51
SHMT1-207ENST00000580002 SREK1IP1Q8N9Q2 155 aaPredicted RBP18.25■□□□□ 0.51
SHMT1-207ENST00000580002 LINC01587Q99440 93 aa18.25■□□□□ 0.51
SHMT1-207ENST00000580002 CXorf65A6NEN9 183 aa18.25■□□□□ 0.51
SHMT1-207ENST00000580002 MORN3Q6PF18 240 aaPredicted RBP18.25■□□□□ 0.51
SHMT1-207ENST00000580002 TIMM8BQ9Y5J9 83 aaPredicted RBP18.25■□□□□ 0.51
SHMT1-207ENST00000580002 MDFICQ9P1T7 246 aa18.24■□□□□ 0.51
SHMT1-207ENST00000580002 COLCA2A8K830 154 aa18.23■□□□□ 0.51
SHMT1-207ENST00000580002 AMBPP02760 352 aa18.23■□□□□ 0.51
SHMT1-207ENST00000580002 AZU1P20160 251 aa18.23■□□□□ 0.51
SHMT1-207ENST00000580002 LYZL1Q6UWQ5 148 aa18.23■□□□□ 0.51
SHMT1-207ENST00000580002 IGLC6P0CF74 106 aa18.22■□□□□ 0.51
SHMT1-207ENST00000580002 KPRPQ5T749 579 aaPredicted RBP18.22■□□□□ 0.51
SHMT1-207ENST00000580002 IMMP2LQ96T52 175 aa18.22■□□□□ 0.51
SHMT1-207ENST00000580002 TDRG1Q3Y452 100 aa18.22■□□□□ 0.51
SHMT1-207ENST00000580002 ZMAT5Q9UDW3 170 aaKnown RBP18.22■□□□□ 0.51
SHMT1-207ENST00000580002 H3BVH4 76 aa18.21■□□□□ 0.51
SHMT1-207ENST00000580002 RNASE3P12724 160 aaKnown RBP18.21■□□□□ 0.51
SHMT1-207ENST00000580002 RPS20P60866 119 aaKnown RBP18.21■□□□□ 0.51
SHMT1-207ENST00000580002 TMEM208Q9BTX3 173 aa18.21■□□□□ 0.51
SHMT1-207ENST00000580002 NAT8BQ9UHF3 227 aa18.21■□□□□ 0.51
SHMT1-207ENST00000580002 S100PP25815 95 aa18.2■□□□□ 0.5
SHMT1-207ENST00000580002 FOXA3P55318 350 aaPredicted RBP18.2■□□□□ 0.5
SHMT1-207ENST00000580002 MRPL54Q6P161 138 aaKnown RBP18.2■□□□□ 0.5
SHMT1-207ENST00000580002 FER1L6-AS1Q8NA97 138 aa18.2■□□□□ 0.5
SHMT1-207ENST00000580002 GFRA4Q9GZZ7 299 aa18.2■□□□□ 0.5
SHMT1-207ENST00000580002 CBY3A6NI87 242 aa18.19■□□□□ 0.5
SHMT1-207ENST00000580002 K7EIL1 84 aa18.19■□□□□ 0.5
SHMT1-207ENST00000580002 ARMS2P0C7Q2 107 aa18.19■□□□□ 0.5
SHMT1-207ENST00000580002 KCNIP4Q6PIL6 250 aa18.19■□□□□ 0.5
SHMT1-207ENST00000580002 IGHV3-16A0A0C4DH30 117 aa18.19■□□□□ 0.5
SHMT1-207ENST00000580002 XKRY2A2RUG3 117 aa18.19■□□□□ 0.5
SHMT1-207ENST00000580002 PYGO2Q9BRQ0 406 aa18.19■□□□□ 0.5
SHMT1-207ENST00000580002 KCNS1Q96KK3 526 aa18.18■□□□□ 0.5
SHMT1-207ENST00000580002 ASIPP42127 132 aa18.17■□□□□ 0.5
SHMT1-207ENST00000580002 DEFB135Q30KP9 77 aa18.17■□□□□ 0.5
SHMT1-207ENST00000580002 OR10AG1Q8NH19 301 aa18.17■□□□□ 0.5
SHMT1-207ENST00000580002 C20orf144Q9BQM9 153 aa18.17■□□□□ 0.5
SHMT1-207ENST00000580002 C1QTNF4Q9BXJ3 329 aa18.17■□□□□ 0.5
SHMT1-207ENST00000580002 MSRB1Q9NZV6 116 aa18.17■□□□□ 0.5
SHMT1-207ENST00000580002 FAM231BA6NCW3 169 aa18.17■□□□□ 0.5
SHMT1-207ENST00000580002 S100A4P26447 101 aaKnown RBP18.17■□□□□ 0.5
SHMT1-207ENST00000580002 KIR2DL5BA0A0G2JN68 375 aa18.16■□□□□ 0.5
SHMT1-207ENST00000580002 KIR2DL5BA0A0G2JPC4 375 aa18.16■□□□□ 0.5
SHMT1-207ENST00000580002 ZNF705AQ6ZN79 300 aaPredicted RBP18.16■□□□□ 0.5
SHMT1-207ENST00000580002 KIR2DL5AQ8N109 375 aa18.16■□□□□ 0.5
SHMT1-207ENST00000580002 KIR2DL5BQ8NHK3 375 aa18.16■□□□□ 0.5
SHMT1-207ENST00000580002 TRBV24-1A0A075B6N3 115 aa18.15■□□□□ 0.5
SHMT1-207ENST00000580002 FAM210BQ96KR6 192 aa18.15■□□□□ 0.5
SHMT1-207ENST00000580002 SSBP4Q9BWG4 385 aaPredicted RBP18.15■□□□□ 0.5
SHMT1-207ENST00000580002 GOLT1BQ9Y3E0 138 aa18.15■□□□□ 0.5
SHMT1-207ENST00000580002 MUC4Q99102 2169 aa18.15■□□□□ 0.5
SHMT1-207ENST00000580002 A8MZ25 164 aa18.14■□□□□ 0.5
SHMT1-207ENST00000580002 APOC4P55056 127 aa18.14■□□□□ 0.5
SHMT1-207ENST00000580002 BTF3L4Q96K17 158 aa18.14■□□□□ 0.5
SHMT1-207ENST00000580002 GSN-AS1Q9NRJ2 163 aa18.14■□□□□ 0.5
SHMT1-207ENST00000580002 CTRLP40313 264 aa18.14■□□□□ 0.49
SHMT1-207ENST00000580002 DNLZQ5SXM8 178 aa18.14■□□□□ 0.49
SHMT1-207ENST00000580002 SNAI2O43623 268 aa18.13■□□□□ 0.49
SHMT1-207ENST00000580002 TMEM256Q8N2U0 113 aa18.13■□□□□ 0.49
SHMT1-207ENST00000580002 C11orf72Q8NBR9 251 aa18.13■□□□□ 0.49
SHMT1-207ENST00000580002 LINC00467Q9BRT7 94 aa18.13■□□□□ 0.49
SHMT1-207ENST00000580002 SCRT2Q9NQ03 307 aa18.13■□□□□ 0.49
SHMT1-207ENST00000580002 NTF3P20783 257 aa18.12■□□□□ 0.49
SHMT1-207ENST00000580002 CAMPP49913 170 aa18.12■□□□□ 0.49
SHMT1-207ENST00000580002 C9orf85Q96MD7 179 aa18.12■□□□□ 0.49
SHMT1-207ENST00000580002 X6R8D5 127 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms