RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 DTX2Q86UW9 622 aa7.49□□□□□ -1.21
CCDC40-212ENST00000574799 Q8N8P6 123 aa7.49□□□□□ -1.21
CCDC40-212ENST00000574799 RITA1Q96K30 269 aa7.49□□□□□ -1.21
CCDC40-212ENST00000574799 PRR25Q96S07 402 aa7.49□□□□□ -1.21
CCDC40-212ENST00000574799 F8VRH5 84 aa7.48□□□□□ -1.21
CCDC40-212ENST00000574799 DLX1P56177 255 aa7.48□□□□□ -1.21
CCDC40-212ENST00000574799 CFAP126Q5VTH2 177 aa7.48□□□□□ -1.21
CCDC40-212ENST00000574799 LYPD1Q8N2G4 141 aa7.48□□□□□ -1.21
CCDC40-212ENST00000574799 ANKRD29Q8N6D5 301 aa7.48□□□□□ -1.21
CCDC40-212ENST00000574799 OR11H6Q8NGC7 330 aa7.48□□□□□ -1.21
CCDC40-212ENST00000574799 ATP6V0E2Q8NHE4 81 aa7.48□□□□□ -1.21
CCDC40-212ENST00000574799 SPTBN1Q01082 2364 aaKnown RBP7.48□□□□□ -1.21
CCDC40-212ENST00000574799 IGF2RP11717 2491 aa7.48□□□□□ -1.21
CCDC40-212ENST00000574799 C16orf97H3BN30 126 aa7.48□□□□□ -1.21
CCDC40-212ENST00000574799 FSTL3O95633 263 aa7.48□□□□□ -1.21
CCDC40-212ENST00000574799 TMEM200BQ69YZ2 307 aa7.48□□□□□ -1.21
CCDC40-212ENST00000574799 MED13LQ71F56 2210 aa7.48□□□□□ -1.21
CCDC40-212ENST00000574799 PTPRQQ9UMZ3 2332 aa7.48□□□□□ -1.21
CCDC40-212ENST00000574799 M0R381 172 aa7.48□□□□□ -1.21
CCDC40-212ENST00000574799 CUBNO60494 3623 aa7.48□□□□□ -1.21
CCDC40-212ENST00000574799 CDSNQ15517 529 aa7.47□□□□□ -1.21
CCDC40-212ENST00000574799 TRAV8-4A0A0B4J246 113 aa7.47□□□□□ -1.21
CCDC40-212ENST00000574799 SLC25A20O43772 301 aa7.47□□□□□ -1.21
CCDC40-212ENST00000574799 TSPAN13O95857 204 aa7.47□□□□□ -1.21
CCDC40-212ENST00000574799 IGHV1-46P01743 117 aa7.47□□□□□ -1.21
CCDC40-212ENST00000574799 KLHL30-AS1Q8NEE0 82 aa7.47□□□□□ -1.21
CCDC40-212ENST00000574799 U3KQK5 164 aa7.47□□□□□ -1.21
CCDC40-212ENST00000574799 IGHV3-66A0A0C4DH42 116 aa7.47□□□□□ -1.21
CCDC40-212ENST00000574799 PVRIGQ6DKI7 326 aa7.47□□□□□ -1.21
CCDC40-212ENST00000574799 SIGLEC9Q9Y336 463 aa7.47□□□□□ -1.21
CCDC40-212ENST00000574799 VSTM5A8MXK1 200 aa7.46□□□□□ -1.21
CCDC40-212ENST00000574799 K7ENP7 123 aa7.46□□□□□ -1.21
CCDC40-212ENST00000574799 ERCC8Q13216 396 aa7.46□□□□□ -1.21
CCDC40-212ENST00000574799 MALRD1Q5VYJ5 2156 aa7.46□□□□□ -1.21
CCDC40-212ENST00000574799 IGKV1-17P01599 117 aa7.46□□□□□ -1.22
CCDC40-212ENST00000574799 HLA-DMBP28068 263 aa7.46□□□□□ -1.22
CCDC40-212ENST00000574799 DLX6P56179 175 aa7.46□□□□□ -1.22
CCDC40-212ENST00000574799 MEIG1Q5JSS6 88 aa7.46□□□□□ -1.22
CCDC40-212ENST00000574799 NTN5Q8WTR8 489 aaPredicted RBP7.46□□□□□ -1.22
CCDC40-212ENST00000574799 PRO0461Q9UI25 63 aa7.46□□□□□ -1.22
CCDC40-212ENST00000574799 CCDC179H3BU77 68 aa7.46□□□□□ -1.22
CCDC40-212ENST00000574799 MFAP4P55083 255 aa7.46□□□□□ -1.22
CCDC40-212ENST00000574799 NDUFV3P56181 108 aaKnown RBP7.46□□□□□ -1.22
CCDC40-212ENST00000574799 RPL32P62910 135 aaKnown RBP7.46□□□□□ -1.22
CCDC40-212ENST00000574799 CHD8Q9HCK8 2581 aa7.46□□□□□ -1.22
CCDC40-212ENST00000574799 H3BRN7 92 aa7.45□□□□□ -1.22
CCDC40-212ENST00000574799 TCL1BO95988 128 aa7.45□□□□□ -1.22
CCDC40-212ENST00000574799 CRYGCP07315 174 aa7.45□□□□□ -1.22
CCDC40-212ENST00000574799 PRSS2P07478 247 aa7.45□□□□□ -1.22
CCDC40-212ENST00000574799 LGALS1P09382 135 aaKnown RBP7.45□□□□□ -1.22
CCDC40-212ENST00000574799 GATA4P43694 442 aa7.45□□□□□ -1.22
CCDC40-212ENST00000574799 IGHV3-49A0A0A0MS15 119 aa7.45□□□□□ -1.22
CCDC40-212ENST00000574799 TNFRSF13BO14836 293 aaPredicted RBP7.45□□□□□ -1.22
CCDC40-212ENST00000574799 LGALS3P17931 250 aaKnown RBP7.45□□□□□ -1.22
CCDC40-212ENST00000574799 FAM159AQ6UWV7 190 aa7.45□□□□□ -1.22
CCDC40-212ENST00000574799 CITED1Q99966 193 aa7.45□□□□□ -1.22
CCDC40-212ENST00000574799 INS-IGF2F8WCM5 200 aa7.45□□□□□ -1.22
CCDC40-212ENST00000574799 MORN3Q6PF18 240 aaPredicted RBP7.45□□□□□ -1.22
CCDC40-212ENST00000574799 ZNF491Q8N8L2 437 aa7.45□□□□□ -1.22
CCDC40-212ENST00000574799 PIFOQ8TCI5 191 aa7.45□□□□□ -1.22
CCDC40-212ENST00000574799 TRAV2A0A0B4J234 112 aa7.44□□□□□ -1.22
CCDC40-212ENST00000574799 F5H697 171 aa7.44□□□□□ -1.22
CCDC40-212ENST00000574799 ZNF80P51504 273 aaPredicted RBP7.44□□□□□ -1.22
CCDC40-212ENST00000574799 ORMDL2Q53FV1 153 aa7.44□□□□□ -1.22
CCDC40-212ENST00000574799 C15orf53Q8NAA6 179 aa7.44□□□□□ -1.22
CCDC40-212ENST00000574799 AKAP9Q99996 3911 aa7.44□□□□□ -1.22
CCDC40-212ENST00000574799 TRBV7-3A0A075B6L6 115 aa7.44□□□□□ -1.22
CCDC40-212ENST00000574799 TRGV3P03979 118 aa7.44□□□□□ -1.22
CCDC40-212ENST00000574799 IGLV2-23P01705 113 aa7.44□□□□□ -1.22
CCDC40-212ENST00000574799 SMCPP49901 116 aaPredicted RBP7.44□□□□□ -1.22
CCDC40-212ENST00000574799 FOXC1Q12948 553 aa7.44□□□□□ -1.22
CCDC40-212ENST00000574799 RAB1BQ9H0U4 201 aa7.44□□□□□ -1.22
CCDC40-212ENST00000574799 RPL13AP40429 203 aaKnown RBP7.43□□□□□ -1.22
CCDC40-212ENST00000574799 ADIPOQQ15848 244 aa7.43□□□□□ -1.22
CCDC40-212ENST00000574799 GATD1Q8NB37 220 aa7.43□□□□□ -1.22
CCDC40-212ENST00000574799 TRAV4A0A0B4J268 109 aa7.43□□□□□ -1.22
CCDC40-212ENST00000574799 PDE6HQ13956 83 aa7.43□□□□□ -1.22
CCDC40-212ENST00000574799 NUP37Q8NFH4 326 aa7.43□□□□□ -1.22
CCDC40-212ENST00000574799 RNF185Q96GF1 192 aa7.43□□□□□ -1.22
CCDC40-212ENST00000574799 PRO1854Q9UHT4 67 aa7.43□□□□□ -1.22
CCDC40-212ENST00000574799 IGHV3-64A0A075B6Q5 118 aa7.43□□□□□ -1.22
CCDC40-212ENST00000574799 TRBV6-1A0A0K0K1D8 114 aa7.43□□□□□ -1.22
CCDC40-212ENST00000574799 C2orf66Q6UXQ4 117 aa7.43□□□□□ -1.22
CCDC40-212ENST00000574799 PLEKHB2Q96CS7 222 aa7.43□□□□□ -1.22
CCDC40-212ENST00000574799 CARD19Q96LW7 228 aa7.43□□□□□ -1.22
CCDC40-212ENST00000574799 ZMAT4Q9H898 229 aa7.43□□□□□ -1.22
CCDC40-212ENST00000574799 C21orf62Q9NYP8 219 aa7.43□□□□□ -1.22
CCDC40-212ENST00000574799 PHLDA3Q9Y5J5 127 aa7.43□□□□□ -1.22
CCDC40-212ENST00000574799 FBN2P35556 2912 aa7.42□□□□□ -1.22
CCDC40-212ENST00000574799 LINC01548A6NM66 108 aa7.42□□□□□ -1.22
CCDC40-212ENST00000574799 SPRY2O43597 315 aa7.42□□□□□ -1.22
CCDC40-212ENST00000574799 RPL11P62913 178 aaKnown RBP7.42□□□□□ -1.22
CCDC40-212ENST00000574799 LYPD2Q6UXB3 125 aa7.42□□□□□ -1.22
CCDC40-212ENST00000574799 TIMD4Q96H15 378 aa7.42□□□□□ -1.22
CCDC40-212ENST00000574799 ZNF56Q15929 161 aa7.42□□□□□ -1.22
CCDC40-212ENST00000574799 IL17RELQ6ZVW7 336 aa7.42□□□□□ -1.22
CCDC40-212ENST00000574799 LINC00574Q9H8X3 128 aa7.42□□□□□ -1.22
CCDC40-212ENST00000574799 FHL3Q13643 280 aa7.42□□□□□ -1.22
CCDC40-212ENST00000574799 TRPT1Q86TN4 253 aaKnown RBP7.42□□□□□ -1.22
CCDC40-212ENST00000574799 RNF182Q8N6D2 247 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms