RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 DNAJC15Q9Y5T4 150 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 ABCA1O95477 2261 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 SYNE2Q8WXH0 6885 aaKnown RBP0.37□□□□□ -2.35
USP3-209ENST00000558925 ZNF469Q96JG9 3925 aaPredicted RBP0.37□□□□□ -2.35
USP3-209ENST00000558925 ITPR3Q14573 2671 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 FBN2P35556 2912 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 SYNJ1O43426 1573 aa0.36□□□□□ -2.35
USP3-209ENST00000558925 HECTD1Q9ULT8 2610 aa0.36□□□□□ -2.35
USP3-209ENST00000558925 PIEZO1Q92508 2521 aa0.36□□□□□ -2.35
USP3-209ENST00000558925 ARAP1Q96P48 1450 aa0.36□□□□□ -2.35
USP3-209ENST00000558925 MUC5BQ9HC84 5762 aaPredicted RBP0.36□□□□□ -2.35
USP3-209ENST00000558925 SULT1C4O75897 302 aa0.36□□□□□ -2.35
USP3-209ENST00000558925 IGHV3-30P01768 117 aa0.36□□□□□ -2.35
USP3-209ENST00000558925 SCTP09683 121 aa0.36□□□□□ -2.35
USP3-209ENST00000558925 IGHV3-30-5P0DP03 117 aa0.36□□□□□ -2.35
USP3-209ENST00000558925 SCGB1A1P11684 91 aa0.36□□□□□ -2.35
USP3-209ENST00000558925 ETV6P41212 452 aa0.36□□□□□ -2.35
USP3-209ENST00000558925 AKR1D1P51857 326 aa0.36□□□□□ -2.35
USP3-209ENST00000558925 DNAJB13P59910 316 aa0.36□□□□□ -2.35
USP3-209ENST00000558925 ESPL1Q14674 2120 aa0.36□□□□□ -2.35
USP3-209ENST00000558925 ALX1Q15699 326 aa0.36□□□□□ -2.35
USP3-209ENST00000558925 CCDC153Q494R4 210 aa0.36□□□□□ -2.35
USP3-209ENST00000558925 LYPD5Q6UWN5 251 aa0.36□□□□□ -2.35
USP3-209ENST00000558925 LINC00299Q6ZSB3 139 aa0.36□□□□□ -2.35
USP3-209ENST00000558925 C10orf111Q8N326 155 aa0.36□□□□□ -2.35
USP3-209ENST00000558925 LINC00208Q96KT6 92 aa0.36□□□□□ -2.35
USP3-209ENST00000558925 CCL19Q99731 98 aa0.36□□□□□ -2.35
USP3-209ENST00000558925 SMIM7Q9BQ49 75 aa0.36□□□□□ -2.35
USP3-209ENST00000558925 GSKIPQ9P0R6 139 aa0.36□□□□□ -2.35
USP3-209ENST00000558925 HSPB8Q9UJY1 196 aa0.36□□□□□ -2.35
USP3-209ENST00000558925 MACF1Q9UPN3 7388 aaKnown RBP0.36□□□□□ -2.35
USP3-209ENST00000558925 MED13LQ71F56 2210 aa0.36□□□□□ -2.35
USP3-209ENST00000558925 ANKRD17O75179 2603 aaKnown RBP0.35□□□□□ -2.35
USP3-209ENST00000558925 MYO9AB2RTY4 2548 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 FASNP49327 2511 aaKnown RBP0.35□□□□□ -2.35
USP3-209ENST00000558925 LRRK2Q5S007 2527 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 ANKRD11Q6UB99 2663 aaPredicted RBP0.35□□□□□ -2.35
USP3-209ENST00000558925 MYO18BQ8IUG5 2567 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 SETD2Q9BYW2 2564 aaPredicted RBP0.35□□□□□ -2.35
USP3-209ENST00000558925 MYH6P13533 1939 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 BORCS7-ASMTA0A0B4J1R7 106 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 TRAV17A0A0B4J275 112 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 TRBV30A0A0K0K1B3 111 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 NBDYA0A0U1RRE5 68 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 TMEM30CPA0ZSE6 113 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 IFITM5A6NNB3 132 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 M0R129 80 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 SMIM24O75264 130 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 GYPBP06028 91 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 HLA-DRB4P13762 266 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 HIST1H1BP16401 226 aaKnown RBP0.35□□□□□ -2.35
USP3-209ENST00000558925 ADCYAP1P18509 176 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 CLLU1Q5K131 121 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 IDO2Q6ZQW0 420 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 Q6ZQY7 126 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 OR8J3Q8NGG0 315 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 MAFIPQ8WZ33 124 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 SMIM3Q9BZL3 60 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 METTL1Q9UBP6 276 aaKnown RBP0.35□□□□□ -2.35
USP3-209ENST00000558925 LSM2Q9Y333 95 aaKnown RBP0.35□□□□□ -2.35
USP3-209ENST00000558925 HLA-DRB4X5D2U9 266 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 BDP1A6H8Y1 2624 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 COL6A5A8TX70 2615 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 SPAG17Q6Q759 2223 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 ERCC6L2Q5T890 1561 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 NCOR1O75376 2440 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 EPG5Q9HCE0 2579 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 STAB1Q9NY15 2570 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 LRP5O75197 1615 aa0.35□□□□□ -2.35
USP3-209ENST00000558925 UBR4Q5T4S7 5183 aa0.34□□□□□ -2.35
USP3-209ENST00000558925 CASZ1Q86V15 1759 aa0.34□□□□□ -2.35
USP3-209ENST00000558925 KIDINS220Q9ULH0 1771 aa0.34□□□□□ -2.35
USP3-209ENST00000558925 A0A0G2JMM0 328 aa0.34□□□□□ -2.36
USP3-209ENST00000558925 A0A1W2PPM0 123 aa0.34□□□□□ -2.36
USP3-209ENST00000558925 K7EIL1 84 aa0.34□□□□□ -2.36
USP3-209ENST00000558925 LY6G6CO95867 125 aa0.34□□□□□ -2.36
USP3-209ENST00000558925 IGF2P01344 180 aa0.34□□□□□ -2.36
USP3-209ENST00000558925 DBIP07108 87 aaKnown RBP0.34□□□□□ -2.36
USP3-209ENST00000558925 IGLC6P0CF74 106 aa0.34□□□□□ -2.36
USP3-209ENST00000558925 LINC00694P0DN24 101 aa0.34□□□□□ -2.36
USP3-209ENST00000558925 KDELR1P24390 212 aa0.34□□□□□ -2.36
USP3-209ENST00000558925 KDM5CP41229 1560 aa0.34□□□□□ -2.36
USP3-209ENST00000558925 LSM3P62310 102 aaKnown RBP0.34□□□□□ -2.36
USP3-209ENST00000558925 FXYD3Q14802 87 aa0.34□□□□□ -2.36
USP3-209ENST00000558925 RHOHQ15669 191 aa0.34□□□□□ -2.36
USP3-209ENST00000558925 ZNF56Q15929 161 aa0.34□□□□□ -2.36
USP3-209ENST00000558925 ARHGAP31Q2M1Z3 1444 aa0.34□□□□□ -2.36
USP3-209ENST00000558925 CCSMST1Q4G0I0 132 aa0.34□□□□□ -2.36
USP3-209ENST00000558925 MORN2Q502X0 79 aa0.34□□□□□ -2.36
USP3-209ENST00000558925 GLYATL3Q5SZD4 288 aa0.34□□□□□ -2.36
USP3-209ENST00000558925 LINC00575Q6W349 94 aa0.34□□□□□ -2.36
USP3-209ENST00000558925 SLC25A26Q70HW3 274 aa0.34□□□□□ -2.36
USP3-209ENST00000558925 OR4S1Q8NGB4 309 aa0.34□□□□□ -2.36
USP3-209ENST00000558925 PLAC4Q8WY50 150 aa0.34□□□□□ -2.36
USP3-209ENST00000558925 SLC35B3Q9H1N7 401 aa0.34□□□□□ -2.36
USP3-209ENST00000558925 CEP350Q5VT06 3117 aa0.34□□□□□ -2.36
USP3-209ENST00000558925 ASH1LQ9NR48 2969 aaKnown RBP0.34□□□□□ -2.36
USP3-209ENST00000558925 VWFP04275 2813 aa0.34□□□□□ -2.36
USP3-209ENST00000558925 CHD6Q8TD26 2715 aa0.34□□□□□ -2.36
USP3-209ENST00000558925 SPTBN4Q9H254 2564 aa0.34□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms