RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 MED11Q9P086 117 aa-0.9□□□□□ -2.55
VPS13C-205ENST00000558088 PYCARDQ9ULZ3 195 aa-0.9□□□□□ -2.55
VPS13C-205ENST00000558088 CDK13Q14004 1512 aaKnown RBP-0.9□□□□□ -2.55
VPS13C-205ENST00000558088 CDK12Q9NYV4 1490 aaPredicted RBP-0.91□□□□□ -2.55
VPS13C-205ENST00000558088 TRAV12-2A0A075B6T6 113 aa-0.91□□□□□ -2.56
VPS13C-205ENST00000558088 TRAV16A0A0A6YYK6 109 aaPredicted RBP-0.91□□□□□ -2.56
VPS13C-205ENST00000558088 A0A0D9SFI3 127 aa-0.91□□□□□ -2.56
VPS13C-205ENST00000558088 IFITM5A6NNB3 132 aa-0.91□□□□□ -2.56
VPS13C-205ENST00000558088 SAA1P0DJI8 122 aaPredicted RBP-0.91□□□□□ -2.56
VPS13C-205ENST00000558088 DIRC1Q969H9 104 aa-0.91□□□□□ -2.56
VPS13C-205ENST00000558088 OTORQ9NRC9 128 aa-0.91□□□□□ -2.56
VPS13C-205ENST00000558088 TMEM242Q9NWH2 141 aa-0.91□□□□□ -2.56
VPS13C-205ENST00000558088 IL20Q9NYY1 176 aa-0.91□□□□□ -2.56
VPS13C-205ENST00000558088 ANK1P16157 1881 aa-0.91□□□□□ -2.56
VPS13C-205ENST00000558088 UHRF1BP1Q6BDS2 1440 aa-0.91□□□□□ -2.56
VPS13C-205ENST00000558088 WNK1Q9H4A3 2382 aa-0.91□□□□□ -2.56
VPS13C-205ENST00000558088 HUWE1Q7Z6Z7 4374 aaKnown RBP-0.92□□□□□ -2.56
VPS13C-205ENST00000558088 TEX49A0A1B0GTD5 131 aa-0.92□□□□□ -2.56
VPS13C-205ENST00000558088 RBAKDNA6NC62 111 aa-0.92□□□□□ -2.56
VPS13C-205ENST00000558088 LOC730098B7Z3J9 87 aa-0.92□□□□□ -2.56
VPS13C-205ENST00000558088 SLC25A4P12235 298 aa-0.92□□□□□ -2.56
VPS13C-205ENST00000558088 ACYP2P14621 99 aa-0.92□□□□□ -2.56
VPS13C-205ENST00000558088 CKS2P33552 79 aa-0.92□□□□□ -2.56
VPS13C-205ENST00000558088 MT4P47944 62 aa-0.92□□□□□ -2.56
VPS13C-205ENST00000558088 BASP1P80723 227 aaKnown RBP-0.92□□□□□ -2.56
VPS13C-205ENST00000558088 CCSMST1Q4G0I0 132 aa-0.92□□□□□ -2.56
VPS13C-205ENST00000558088 TEX29Q8N6K0 151 aa-0.92□□□□□ -2.56
VPS13C-205ENST00000558088 AP3S1Q92572 193 aa-0.92□□□□□ -2.56
VPS13C-205ENST00000558088 CEP19Q96LK0 163 aa-0.92□□□□□ -2.56
VPS13C-205ENST00000558088 SS18L2Q9UHA2 77 aa-0.92□□□□□ -2.56
VPS13C-205ENST00000558088 RREB1Q92766 1687 aa-0.92□□□□□ -2.56
VPS13C-205ENST00000558088 BLMP54132 1417 aaPredicted RBP-0.92□□□□□ -2.56
VPS13C-205ENST00000558088 KIAA1107Q9UPP5 1409 aa-0.92□□□□□ -2.56
VPS13C-205ENST00000558088 HIVEP1P15822 2718 aa-0.92□□□□□ -2.56
VPS13C-205ENST00000558088 MAP1AP78559 2803 aaPredicted RBP-0.93□□□□□ -2.56
VPS13C-205ENST00000558088 COL6A3P12111 3177 aa-0.93□□□□□ -2.56
VPS13C-205ENST00000558088 A0A087WTM6 91 aa-0.93□□□□□ -2.56
VPS13C-205ENST00000558088 TRAV22A0A0B4J277 110 aa-0.93□□□□□ -2.56
VPS13C-205ENST00000558088 IGHV1-24A0A0C4DH33 117 aa-0.93□□□□□ -2.56
VPS13C-205ENST00000558088 TRBV10-1A0A0K0K1A3 114 aa-0.93□□□□□ -2.56
VPS13C-205ENST00000558088 TCRBV3S1A0A5B6 114 aa-0.93□□□□□ -2.56
VPS13C-205ENST00000558088 ATG12O94817 140 aa-0.93□□□□□ -2.56
VPS13C-205ENST00000558088 SPRR1AP35321 89 aa-0.93□□□□□ -2.56
VPS13C-205ENST00000558088 CDKN2CP42773 168 aa-0.93□□□□□ -2.56
VPS13C-205ENST00000558088 BLCAPP62952 87 aa-0.93□□□□□ -2.56
VPS13C-205ENST00000558088 Q6ZRX8 168 aa-0.93□□□□□ -2.56
VPS13C-205ENST00000558088 DYDC1Q8WWB3 177 aa-0.93□□□□□ -2.56
VPS13C-205ENST00000558088 LYRM2Q9NU23 88 aaPredicted RBP-0.93□□□□□ -2.56
VPS13C-205ENST00000558088 ARMC1Q9NVT9 282 aa-0.93□□□□□ -2.56
VPS13C-205ENST00000558088 SLC22A13Q9Y226 551 aa-0.93□□□□□ -2.56
VPS13C-205ENST00000558088 FRMPD1Q5SYB0 1578 aa-0.93□□□□□ -2.56
VPS13C-205ENST00000558088 TNS1Q9HBL0 1735 aaKnown RBP-0.93□□□□□ -2.56
VPS13C-205ENST00000558088 NHSL1Q5SYE7 1610 aa-0.93□□□□□ -2.56
VPS13C-205ENST00000558088 LAMA5O15230 3695 aa-0.94□□□□□ -2.56
VPS13C-205ENST00000558088 NUP210LQ5VU65 1888 aa-0.94□□□□□ -2.56
VPS13C-205ENST00000558088 TRBV7-1A0A0A6YYK4 115 aa-0.94□□□□□ -2.56
VPS13C-205ENST00000558088 TMEM210A6NLX4 147 aa-0.94□□□□□ -2.56
VPS13C-205ENST00000558088 IFNA21P01568 189 aa-0.94□□□□□ -2.56
VPS13C-205ENST00000558088 CST2P09228 141 aa-0.94□□□□□ -2.56
VPS13C-205ENST00000558088 SDC2P34741 201 aa-0.94□□□□□ -2.56
VPS13C-205ENST00000558088 Q96NJ1 140 aa-0.94□□□□□ -2.56
VPS13C-205ENST00000558088 LRP1BQ9NZR2 4599 aa-0.95□□□□□ -2.56
VPS13C-205ENST00000558088 CD109Q6YHK3 1445 aa-0.95□□□□□ -2.56
VPS13C-205ENST00000558088 CYBAP13498 195 aa-0.95□□□□□ -2.56
VPS13C-205ENST00000558088 LSM3P62310 102 aaKnown RBP-0.95□□□□□ -2.56
VPS13C-205ENST00000558088 CCL7P80098 99 aa-0.95□□□□□ -2.56
VPS13C-205ENST00000558088 LTC4SQ16873 150 aa-0.95□□□□□ -2.56
VPS13C-205ENST00000558088 Q5VSD8 79 aa-0.95□□□□□ -2.56
VPS13C-205ENST00000558088 C3orf33Q6P1S2 294 aa-0.95□□□□□ -2.56
VPS13C-205ENST00000558088 LINC00305Q7Z4B0 112 aa-0.95□□□□□ -2.56
VPS13C-205ENST00000558088 C4orf33Q8N1A6 199 aa-0.95□□□□□ -2.56
VPS13C-205ENST00000558088 CARD19Q96LW7 228 aa-0.95□□□□□ -2.56
VPS13C-205ENST00000558088 NCAPD3P42695 1498 aa-0.95□□□□□ -2.56
VPS13C-205ENST00000558088 CAMSAP2Q08AD1 1489 aa-0.95□□□□□ -2.56
VPS13C-205ENST00000558088 NISCHQ9Y2I1 1504 aa-0.95□□□□□ -2.56
VPS13C-205ENST00000558088 SIPA1L2Q9P2F8 1722 aaPredicted RBP-0.95□□□□□ -2.56
VPS13C-205ENST00000558088 CSMD3Q7Z407 3707 aa-0.95□□□□□ -2.56
VPS13C-205ENST00000558088 ALMS1Q8TCU4 4167 aa-0.96□□□□□ -2.56
VPS13C-205ENST00000558088 CHD6Q8TD26 2715 aa-0.96□□□□□ -2.56
VPS13C-205ENST00000558088 GABARAPH6UMI1 98 aa-0.96□□□□□ -2.56
VPS13C-205ENST00000558088 OR2H2O95918 312 aa-0.96□□□□□ -2.56
VPS13C-205ENST00000558088 S100A6P06703 90 aa-0.96□□□□□ -2.56
VPS13C-205ENST00000558088 FAM74A4Q5TZK3 123 aa-0.96□□□□□ -2.56
VPS13C-205ENST00000558088 CYP2G1PQ6ZSU1 146 aa-0.96□□□□□ -2.56
VPS13C-205ENST00000558088 NUP35Q8NFH5 326 aa-0.96□□□□□ -2.56
VPS13C-205ENST00000558088 OR13C6PQ8NH95 151 aa-0.96□□□□□ -2.56
VPS13C-205ENST00000558088 VPS25Q9BRG1 176 aa-0.96□□□□□ -2.56
VPS13C-205ENST00000558088 SH3BGRL3Q9H299 93 aa-0.96□□□□□ -2.56
VPS13C-205ENST00000558088 LRTM1Q9HBL6 345 aa-0.96□□□□□ -2.56
VPS13C-205ENST00000558088 LAMTOR3Q9UHA4 124 aa-0.96□□□□□ -2.56
VPS13C-205ENST00000558088 DOCK11Q5JSL3 2073 aa-0.96□□□□□ -2.56
VPS13C-205ENST00000558088 HELZP42694 1942 aaKnown RBP-0.97□□□□□ -2.56
VPS13C-205ENST00000558088 TANC2Q9HCD6 1990 aa-0.97□□□□□ -2.56
VPS13C-205ENST00000558088 DLC1Q96QB1 1528 aa-0.97□□□□□ -2.56
VPS13C-205ENST00000558088 FXYD6-FXYD2A0A087WZ82 144 aa-0.97□□□□□ -2.56
VPS13C-205ENST00000558088 TRAV13-1A0A0B4J241 112 aa-0.97□□□□□ -2.56
VPS13C-205ENST00000558088 PPP5D1E7EU14 171 aa-0.97□□□□□ -2.56
VPS13C-205ENST00000558088 H3BMG7 143 aa-0.97□□□□□ -2.56
VPS13C-205ENST00000558088 CSN2P05814 226 aa-0.97□□□□□ -2.56
VPS13C-205ENST00000558088 SPINK8P0C7L1 97 aa-0.97□□□□□ -2.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms