RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 S100A3P33764 101 aa1.42□□□□□ -2.18
LIMA1-207ENST00000551486 SPINT3P49223 89 aa1.42□□□□□ -2.18
LIMA1-207ENST00000551486 SMIM11AP58511 58 aa1.42□□□□□ -2.18
LIMA1-207ENST00000551486 FXYD7P58549 80 aa1.42□□□□□ -2.18
LIMA1-207ENST00000551486 ESRGQ1W209 222 aa1.42□□□□□ -2.18
LIMA1-207ENST00000551486 C15orf32Q32M92 178 aa1.42□□□□□ -2.18
LIMA1-207ENST00000551486 MRPL51Q4U2R6 128 aaKnown RBP1.42□□□□□ -2.18
LIMA1-207ENST00000551486 LYPD2Q6UXB3 125 aa1.42□□□□□ -2.18
LIMA1-207ENST00000551486 ORMDL3Q8N138 153 aa1.42□□□□□ -2.18
LIMA1-207ENST00000551486 SMIM4Q8WVI0 70 aa1.42□□□□□ -2.18
LIMA1-207ENST00000551486 TMEM190Q8WZ59 177 aa1.42□□□□□ -2.18
LIMA1-207ENST00000551486 NMES1Q9C002 83 aa1.42□□□□□ -2.18
LIMA1-207ENST00000551486 PSENENQ9NZ42 101 aa1.42□□□□□ -2.18
LIMA1-207ENST00000551486 DHRS4-AS1Q9P1J3 65 aa1.42□□□□□ -2.18
LIMA1-207ENST00000551486 DEC1Q9P2X7 70 aa1.42□□□□□ -2.18
LIMA1-207ENST00000551486 KIF13AQ9H1H9 1805 aa1.42□□□□□ -2.18
LIMA1-207ENST00000551486 HELZP42694 1942 aaKnown RBP1.42□□□□□ -2.18
LIMA1-207ENST00000551486 PLXNC1O60486 1568 aa1.42□□□□□ -2.18
LIMA1-207ENST00000551486 KIAA2026Q5HYC2 2103 aa1.42□□□□□ -2.18
LIMA1-207ENST00000551486 NUP210LQ5VU65 1888 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 AGRNO00468 2067 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 CDK13Q14004 1512 aaKnown RBP1.41□□□□□ -2.18
LIMA1-207ENST00000551486 MARF1Q9Y4F3 1742 aaKnown RBP1.41□□□□□ -2.18
LIMA1-207ENST00000551486 PARP14Q460N5 1801 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 TCHHQ07283 1943 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 MIA3Q5JRA6 1907 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 IGKV2D-26A0A0A0MRZ7 120 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 TRAV3A0A0B4J244 114 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 TEX49A0A1B0GTD5 131 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 TMEM30CPA0ZSE6 113 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 C5orf67F2Z3F1 127 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 H3BMM0 161 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 C19orf84I3L1E1 186 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 NDUFC1O43677 76 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 BCE1O60756 84 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 IGLV3-25P01717 112 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 IGHV1-69P01742 117 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 TRGV3P03979 118 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 SAA1P0DJI8 122 aaPredicted RBP1.41□□□□□ -2.18
LIMA1-207ENST00000551486 DEFA4P12838 97 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 NPPCP23582 126 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 UBE2D3P61077 147 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 UBE2D2P62837 147 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 LUZP6Q538Z0 58 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 C9orf116Q5BN46 136 aaPredicted RBP1.41□□□□□ -2.18
LIMA1-207ENST00000551486 RNASE13Q5GAN3 156 aaKnown RBP1.41□□□□□ -2.18
LIMA1-207ENST00000551486 PSMG4Q5JS54 123 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 C1orf134Q5TEV5 83 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 SDIM1Q6ZPB5 146 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 Q6ZR03 302 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 ABCA7Q8IZY2 2146 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 C20orf197Q8N268 126 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 RPRMLQ8N4K4 120 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 Q8N814 137 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 C20orf203Q8NBC4 194 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 PFN4Q8NHR9 129 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 DYNLRB2Q8TF09 96 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 UBE2WQ96B02 151 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 CYYR1Q96J86 154 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 SCGB3A1Q96QR1 104 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 RETNLBQ9BQ08 111 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 GABARAPL1Q9H0R8 117 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 C11orf1Q9H5F2 150 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 FGF22Q9HCT0 170 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 C8orf17Q9NRJ1 99 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 CMC2Q9NRP2 79 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 NKTRP30414 1462 aaKnown RBP1.41□□□□□ -2.18
LIMA1-207ENST00000551486 C1orf167Q5SNV9 1468 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 ADGRB1O14514 1584 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 LAMC3Q9Y6N6 1575 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 CUL7Q14999 1698 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 COL18A1P39060 1754 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 MYO9BQ13459 2157 aa1.41□□□□□ -2.18
LIMA1-207ENST00000551486 ASXL1Q8IXJ9 1541 aa1.4□□□□□ -2.18
LIMA1-207ENST00000551486 TARBP1Q13395 1621 aaKnown RBP1.4□□□□□ -2.18
LIMA1-207ENST00000551486 IQGAP3Q86VI3 1631 aa1.4□□□□□ -2.18
LIMA1-207ENST00000551486 ABCA3Q99758 1704 aa1.4□□□□□ -2.18
LIMA1-207ENST00000551486 KIAA1210Q9ULL0 1709 aa1.4□□□□□ -2.18
LIMA1-207ENST00000551486 ZSWIM8A7E2V4 1837 aa1.4□□□□□ -2.18
LIMA1-207ENST00000551486 BRCA1P38398 1863 aaKnown RBP1.4□□□□□ -2.19
LIMA1-207ENST00000551486 THSD7AQ9UPZ6 1657 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 PXDNLA1KZ92 1463 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 IGHV4-30-2A0A087WSY4 118 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 IGHV3-49A0A0A0MS15 119 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 IGHV3-21A0A0B4J1V1 117 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 TRBV10-2A0A0K0K1G8 114 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 F8WEM9 126 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 IGHV3-30-3P0DP02 117 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 RPL27AP46776 148 aaKnown RBP1.4□□□□□ -2.19
LIMA1-207ENST00000551486 SSBP1Q04837 148 aaKnown RBP1.4□□□□□ -2.19
LIMA1-207ENST00000551486 PRR4Q16378 134 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 ASB16-AS1Q495Z4 193 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 C9orf66Q5T8R8 295 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 SPANXN1Q5VSR9 72 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 LYZL1Q6UWQ5 148 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 LYZL2Q7Z4W2 148 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 LINC00612Q8N6U2 182 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 CNEP1R1Q8N9A8 125 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 C1orf64Q8NEQ6 169 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 NPBQ8NG41 125 aa1.4□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms