RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 SMIM15Q7Z3B0 74 aa0.49□□□□□ -2.33
CPSF3-205ENST00000489629 LINC00305Q7Z4B0 112 aa0.49□□□□□ -2.33
CPSF3-205ENST00000489629 OR5AS1Q8N127 324 aa0.49□□□□□ -2.33
CPSF3-205ENST00000489629 LRRC18Q8N456 261 aa0.49□□□□□ -2.33
CPSF3-205ENST00000489629 CCDC32Q9BV29 185 aa0.49□□□□□ -2.33
CPSF3-205ENST00000489629 IGF2RP11717 2491 aa0.49□□□□□ -2.33
CPSF3-205ENST00000489629 FAM186AA6NE01 2351 aa0.49□□□□□ -2.33
CPSF3-205ENST00000489629 SPTBN2O15020 2390 aa0.49□□□□□ -2.33
CPSF3-205ENST00000489629 CSMD2Q7Z408 3487 aa0.49□□□□□ -2.33
CPSF3-205ENST00000489629 PRRC2CQ9Y520 2896 aaKnown RBP0.49□□□□□ -2.33
CPSF3-205ENST00000489629 BIVM-ERCC5R4GMW8 1640 aa0.49□□□□□ -2.33
CPSF3-205ENST00000489629 STAB2Q8WWQ8 2551 aa0.49□□□□□ -2.33
CPSF3-205ENST00000489629 COL12A1Q99715 3063 aa0.49□□□□□ -2.33
CPSF3-205ENST00000489629 EPRSP07814 1512 aaKnown RBP0.48□□□□□ -2.33
CPSF3-205ENST00000489629 EHBP1L1Q8N3D4 1523 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 OTOGQ6ZRI0 2925 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 BCL9O00512 1426 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 FREM2Q5SZK8 3169 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 BCORL1Q5H9F3 1711 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 LOC107984640A0A0U1RRK4 108 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 GNG14A0A1W2PPG7 69 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 M0QZK8 103 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 FABP4P15090 132 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 COX7CP15954 63 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 SDC2P34741 201 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 EFNA4P52798 201 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 DIAPH2-AS1Q14236 149 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 GLIPR1L1Q6UWM5 242 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 Q8N6K4 173 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 OR5H6Q8NGV6 325 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 ISOC1Q96CN7 298 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 NABP2Q9BQ15 211 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 LIMD2Q9BT23 127 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 WFDC10AQ9H1F0 79 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 CBLN4Q9NTU7 201 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 TMEM14CQ9P0S9 112 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 LAMTOR3Q9UHA4 124 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 HMCN2Q8NDA2 5059 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 MGAM2Q2M2H8 2515 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 USP54Q70EL1 1684 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 CUX1P39880 1505 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 EFCAB6Q5THR3 1501 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 NCAPD3P42695 1498 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 ABCC10Q5T3U5 1492 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 ZCCHC6Q5VYS8 1495 aaKnown RBP0.48□□□□□ -2.33
CPSF3-205ENST00000489629 KIAA1549LQ6ZVL6 1849 aa0.48□□□□□ -2.33
CPSF3-205ENST00000489629 CUBNO60494 3623 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 FAM135BQ49AJ0 1406 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 SIPA1L2Q9P2F8 1722 aaPredicted RBP0.47□□□□□ -2.33
CPSF3-205ENST00000489629 VPS13CQ709C8 3753 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 SSPOA2VEC9 5147 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 ZZEF1O43149 2961 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 DSPP15924 2871 aaKnown RBP0.47□□□□□ -2.33
CPSF3-205ENST00000489629 TRBV27A0A0K0K1C4 114 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 E7EQ34 232 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 H3BMG7 143 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 H3BRM9 83 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 PPYP01298 95 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 IGLV3-1P01715 115 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 S100GP29377 79 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 CIRBPQ14011 172 aaKnown RBP0.47□□□□□ -2.33
CPSF3-205ENST00000489629 VMA21Q3ZAQ7 101 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 SAMD13Q5VXD3 122 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 Q5XG85 94 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 CROCCP2Q86T23 111 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 TAC4Q86UU9 113 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 TEN1Q86WV5 123 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 CLEC2BQ92478 149 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 OR4C12Q96R67 309 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 AMELYQ99218 206 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 TMEM138Q9NPI0 162 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 LAMTOR2Q9Y2Q5 125 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 TPRKBQ9Y3C4 175 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 LAMC3Q9Y6N6 1575 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 MED12Q93074 2177 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 ATMQ13315 3056 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 HIVEP1P15822 2718 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 DMXL1Q9Y485 3027 aa0.47□□□□□ -2.33
CPSF3-205ENST00000489629 TCOF1Q13428 1488 aaKnown RBP0.47□□□□□ -2.33
CPSF3-205ENST00000489629 KDM6AO15550 1401 aaPredicted RBP0.47□□□□□ -2.33
CPSF3-205ENST00000489629 CTTNBP2Q8WZ74 1663 aa0.46□□□□□ -2.34
CPSF3-205ENST00000489629 ROBO1Q9Y6N7 1651 aa0.46□□□□□ -2.34
CPSF3-205ENST00000489629 ASCC3Q8N3C0 2202 aaKnown RBP0.46□□□□□ -2.34
CPSF3-205ENST00000489629 HELZP42694 1942 aaKnown RBP0.46□□□□□ -2.34
CPSF3-205ENST00000489629 RNF213Q63HN8 5207 aa0.46□□□□□ -2.34
CPSF3-205ENST00000489629 SPTA1P02549 2419 aa0.46□□□□□ -2.34
CPSF3-205ENST00000489629 VIRMAQ69YN4 1812 aaKnown RBP0.46□□□□□ -2.34
CPSF3-205ENST00000489629 NIPBLQ6KC79 2804 aaeCLIP0.46□□□□□ -2.34
CPSF3-205ENST00000489629 TRAV13-1A0A0B4J241 112 aa0.46□□□□□ -2.34
CPSF3-205ENST00000489629 LYRM1O43325 122 aa0.46□□□□□ -2.34
CPSF3-205ENST00000489629 CD14P08571 375 aa0.46□□□□□ -2.34
CPSF3-205ENST00000489629 CRYGSP22914 178 aa0.46□□□□□ -2.34
CPSF3-205ENST00000489629 MRPS36P82909 103 aaKnown RBP0.46□□□□□ -2.34
CPSF3-205ENST00000489629 DR1Q01658 176 aa0.46□□□□□ -2.34
CPSF3-205ENST00000489629 TOMM20LQ6UXN7 152 aa0.46□□□□□ -2.34
CPSF3-205ENST00000489629 SBSPONQ8IVN8 264 aa0.46□□□□□ -2.34
CPSF3-205ENST00000489629 OR9Q1Q8NGQ5 310 aa0.46□□□□□ -2.34
CPSF3-205ENST00000489629 OR10AG1Q8NH19 301 aa0.46□□□□□ -2.34
CPSF3-205ENST00000489629 BRK1Q8WUW1 75 aa0.46□□□□□ -2.34
CPSF3-205ENST00000489629 PRELID3AQ96N28 172 aa0.46□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms