RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 IGKV1-9A0A0C4DH69 117 aa3.8□□□□□ -1.8
COL3A1-205ENST00000470167 RBMY1BA6NDE4 496 aaKnown RBP3.8□□□□□ -1.8
COL3A1-205ENST00000470167 RBMY1EA6NEQ0 496 aaKnown RBP3.8□□□□□ -1.8
COL3A1-205ENST00000470167 EPOPA6NHQ4 379 aa3.8□□□□□ -1.8
COL3A1-205ENST00000470167 A6NN06 94 aa3.8□□□□□ -1.8
COL3A1-205ENST00000470167 IQCF6A8MYZ5 107 aa3.8□□□□□ -1.8
COL3A1-205ENST00000470167 BUB1B-PAK6H3BSN5 160 aa3.8□□□□□ -1.8
COL3A1-205ENST00000470167 RBMY1DP0C7P1 496 aaKnown RBP3.8□□□□□ -1.8
COL3A1-205ENST00000470167 RBMY1A1P0DJD3 496 aaKnown RBP3.8□□□□□ -1.8
COL3A1-205ENST00000470167 RBMY1CP0DJD4 496 aa3.8□□□□□ -1.8
COL3A1-205ENST00000470167 CCL4P13236 92 aa3.8□□□□□ -1.8
COL3A1-205ENST00000470167 ZNF22P17026 224 aaPredicted RBP3.8□□□□□ -1.8
COL3A1-205ENST00000470167 B3GALT5-AS1P59052 145 aa3.8□□□□□ -1.8
COL3A1-205ENST00000470167 CXCL6P80162 114 aa3.8□□□□□ -1.8
COL3A1-205ENST00000470167 RBMY1FQ15415 496 aaKnown RBP3.8□□□□□ -1.8
COL3A1-205ENST00000470167 RHOHQ15669 191 aa3.8□□□□□ -1.8
COL3A1-205ENST00000470167 NSUN5P1Q3KNT7 163 aa3.8□□□□□ -1.8
COL3A1-205ENST00000470167 LYZL2Q7Z4W2 148 aa3.8□□□□□ -1.8
COL3A1-205ENST00000470167 FAM223AQ8IWN6 122 aa3.8□□□□□ -1.8
COL3A1-205ENST00000470167 NKAPP1Q8N9T2 125 aa3.8□□□□□ -1.8
COL3A1-205ENST00000470167 NUP37Q8NFH4 326 aa3.8□□□□□ -1.8
COL3A1-205ENST00000470167 WFDC5Q8TCV5 224 aa3.8□□□□□ -1.8
COL3A1-205ENST00000470167 COL4A3Q01955 1670 aa3.8□□□□□ -1.8
COL3A1-205ENST00000470167 PTPRBP23467 1997 aa3.8□□□□□ -1.8
COL3A1-205ENST00000470167 PTPRDP23468 1912 aa3.8□□□□□ -1.8
COL3A1-205ENST00000470167 ABCA12Q86UK0 2595 aa3.79□□□□□ -1.8
COL3A1-205ENST00000470167 IGKV1D-17A0A075B6S4 117 aa3.79□□□□□ -1.8
COL3A1-205ENST00000470167 A0A096LNJ9 63 aa3.79□□□□□ -1.8
COL3A1-205ENST00000470167 IGKV1D-13A0A0B4J2D9 117 aa3.79□□□□□ -1.8
COL3A1-205ENST00000470167 LOC389332A0A1B0GUA5 103 aa3.79□□□□□ -1.8
COL3A1-205ENST00000470167 CYSRT1A8MQ03 144 aa3.79□□□□□ -1.8
COL3A1-205ENST00000470167 IGKV1-13P0DP09 117 aa3.79□□□□□ -1.8
COL3A1-205ENST00000470167 MFAP2P55001 183 aa3.79□□□□□ -1.8
COL3A1-205ENST00000470167 RBM3P98179 157 aaKnown RBP3.79□□□□□ -1.8
COL3A1-205ENST00000470167 ESRGQ1W209 222 aa3.79□□□□□ -1.8
COL3A1-205ENST00000470167 KRTAP27-1Q3LI81 207 aa3.79□□□□□ -1.8
COL3A1-205ENST00000470167 IGFL3Q6UXB1 125 aa3.79□□□□□ -1.8
COL3A1-205ENST00000470167 ATP11AUNQ6ZP68 121 aa3.79□□□□□ -1.8
COL3A1-205ENST00000470167 GPHB5Q86YW7 130 aa3.79□□□□□ -1.8
COL3A1-205ENST00000470167 SLC25A22Q9H936 323 aa3.79□□□□□ -1.8
COL3A1-205ENST00000470167 PROK2Q9HC23 129 aa3.79□□□□□ -1.8
COL3A1-205ENST00000470167 ESM1Q9NQ30 184 aa3.79□□□□□ -1.8
COL3A1-205ENST00000470167 COL11A1P12107 1806 aaPredicted RBP3.79□□□□□ -1.8
COL3A1-205ENST00000470167 SHROOM3Q8TF72 1996 aa3.78□□□□□ -1.8
COL3A1-205ENST00000470167 KIAA1549Q9HCM3 1950 aa3.78□□□□□ -1.8
COL3A1-205ENST00000470167 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.78□□□□□ -1.8
COL3A1-205ENST00000470167 FAM223BA6NKX1 122 aa3.78□□□□□ -1.8
COL3A1-205ENST00000470167 TMEM14DPA8MWL7 114 aa3.78□□□□□ -1.8
COL3A1-205ENST00000470167 TRBV12-3P01733 135 aa3.78□□□□□ -1.8
COL3A1-205ENST00000470167 HMGN2P05204 90 aaKnown RBP3.78□□□□□ -1.8
COL3A1-205ENST00000470167 INAFM2P0DMQ5 153 aa3.78□□□□□ -1.8
COL3A1-205ENST00000470167 RNASE4P34096 147 aaKnown RBP3.78□□□□□ -1.8
COL3A1-205ENST00000470167 UBE2AP49459 152 aa3.78□□□□□ -1.8
COL3A1-205ENST00000470167 LINC00205P59089 165 aa3.78□□□□□ -1.8
COL3A1-205ENST00000470167 FBXL19-AS1Q494R0 122 aa3.78□□□□□ -1.8
COL3A1-205ENST00000470167 CLLU1OSQ5K130 101 aa3.78□□□□□ -1.8
COL3A1-205ENST00000470167 GUSBP11Q6P575 273 aa3.78□□□□□ -1.8
COL3A1-205ENST00000470167 C2orf82Q6UX34 121 aa3.78□□□□□ -1.8
COL3A1-205ENST00000470167 VMO1Q7Z5L0 202 aa3.78□□□□□ -1.8
COL3A1-205ENST00000470167 ZNF491Q8N8L2 437 aa3.78□□□□□ -1.8
COL3A1-205ENST00000470167 SCN2AQ99250 2005 aa3.78□□□□□ -1.8
COL3A1-205ENST00000470167 ACACBO00763 2458 aa3.78□□□□□ -1.8
COL3A1-205ENST00000470167 DOCK9Q9BZ29 2069 aa3.77□□□□□ -1.81
COL3A1-205ENST00000470167 TRAV7A0A075B6U4 112 aa3.77□□□□□ -1.81
COL3A1-205ENST00000470167 A0A087WZ39 114 aa3.77□□□□□ -1.81
COL3A1-205ENST00000470167 IGLV3-32A0A0A0MS00 114 aa3.77□□□□□ -1.81
COL3A1-205ENST00000470167 IGHV1OR15-9A0A0B4J2B8 117 aa3.77□□□□□ -1.81
COL3A1-205ENST00000470167 TRBV30A0A0K0K1B3 111 aa3.77□□□□□ -1.81
COL3A1-205ENST00000470167 LINC01546A6NGU7 62 aa3.77□□□□□ -1.81
COL3A1-205ENST00000470167 PSPHP1O15172 72 aa3.77□□□□□ -1.81
COL3A1-205ENST00000470167 IGLV3-27P01718 113 aa3.77□□□□□ -1.81
COL3A1-205ENST00000470167 IGHV4-34P06331 123 aa3.77□□□□□ -1.81
COL3A1-205ENST00000470167 CRIP2P52943 208 aaPredicted RBP3.77□□□□□ -1.81
COL3A1-205ENST00000470167 BLCAPP62952 87 aa3.77□□□□□ -1.81
COL3A1-205ENST00000470167 TWIST1Q15672 202 aa3.77□□□□□ -1.81
COL3A1-205ENST00000470167 LINC01554Q52M75 96 aa3.77□□□□□ -1.81
COL3A1-205ENST00000470167 Q6ZR03 302 aa3.77□□□□□ -1.81
COL3A1-205ENST00000470167 DEFB123Q8N688 67 aa3.77□□□□□ -1.81
COL3A1-205ENST00000470167 Q96M85 177 aa3.77□□□□□ -1.81
COL3A1-205ENST00000470167 PRO1854Q9UHT4 67 aa3.77□□□□□ -1.81
COL3A1-205ENST00000470167 UBE2D4Q9Y2X8 147 aa3.77□□□□□ -1.81
COL3A1-205ENST00000470167 ANKRD12Q6UB98 2062 aa3.77□□□□□ -1.81
COL3A1-205ENST00000470167 DOCK4Q8N1I0 1966 aa3.76□□□□□ -1.81
COL3A1-205ENST00000470167 IGLV3-10A0A075B6K4 115 aa3.76□□□□□ -1.81
COL3A1-205ENST00000470167 IGLV2-8P01709 118 aa3.76□□□□□ -1.81
COL3A1-205ENST00000470167 FUSP35637 526 aaKnown RBP eCLIP3.76□□□□□ -1.81
COL3A1-205ENST00000470167 LPAL2Q16609 132 aa3.76□□□□□ -1.81
COL3A1-205ENST00000470167 MRPL51Q4U2R6 128 aaKnown RBP3.76□□□□□ -1.81
COL3A1-205ENST00000470167 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.76□□□□□ -1.81
COL3A1-205ENST00000470167 ATP5EP2Q5VTU8 51 aa3.76□□□□□ -1.81
COL3A1-205ENST00000470167 Q6ZPA2 131 aa3.76□□□□□ -1.81
COL3A1-205ENST00000470167 PRNTQ86SH4 94 aa3.76□□□□□ -1.81
COL3A1-205ENST00000470167 BBC3Q96PG8 261 aaPredicted RBP3.76□□□□□ -1.81
COL3A1-205ENST00000470167 NABP2Q9BQ15 211 aa3.76□□□□□ -1.81
COL3A1-205ENST00000470167 GFRA4Q9GZZ7 299 aa3.76□□□□□ -1.81
COL3A1-205ENST00000470167 MAP6D1Q9H9H5 199 aa3.76□□□□□ -1.81
COL3A1-205ENST00000470167 C5orf42Q9H799 3197 aa3.76□□□□□ -1.81
COL3A1-205ENST00000470167 MAP1BP46821 2468 aaKnown RBP3.76□□□□□ -1.81
COL3A1-205ENST00000470167 DOCK8Q8NF50 2099 aa3.75□□□□□ -1.81
COL3A1-205ENST00000470167 BPTFQ12830 3046 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms