RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 LAGE3Q14657 143 aa16.03■□□□□ 0.16
CTCF-202ENST00000401394 MYOZ3Q8TDC0 251 aa16.03■□□□□ 0.16
CTCF-202ENST00000401394 ZNF479Q96JC4 524 aa16.03■□□□□ 0.16
CTCF-202ENST00000401394 A0A1W2PPR1 153 aa16.03■□□□□ 0.16
CTCF-202ENST00000401394 C8orf86Q6ZUL3 223 aa16.03■□□□□ 0.16
CTCF-202ENST00000401394 Q8N6K4 173 aa16.02■□□□□ 0.16
CTCF-202ENST00000401394 C14orf178Q8N769 122 aaPredicted RBP16.02■□□□□ 0.16
CTCF-202ENST00000401394 SPTBN4Q9H254 2564 aa16.01■□□□□ 0.15
CTCF-202ENST00000401394 CREBBPQ92793 2442 aa16.01■□□□□ 0.15
CTCF-202ENST00000401394 PRSS29PA6NIE9 313 aa16.01■□□□□ 0.15
CTCF-202ENST00000401394 TRBV12-3P01733 135 aa16.01■□□□□ 0.15
CTCF-202ENST00000401394 KLHL30-AS1Q8NEE0 82 aa16.01■□□□□ 0.15
CTCF-202ENST00000401394 TM2D2Q9BX73 214 aa16.01■□□□□ 0.15
CTCF-202ENST00000401394 E9PLD3 99 aa16■□□□□ 0.15
CTCF-202ENST00000401394 TMEM78Q5T7P6 136 aa16■□□□□ 0.15
CTCF-202ENST00000401394 SAMD13Q5VXD3 122 aa16■□□□□ 0.15
CTCF-202ENST00000401394 SPANXB1Q9NS25 103 aaPredicted RBP16■□□□□ 0.15
CTCF-202ENST00000401394 SPAG8Q99932 426 aaPredicted RBP16■□□□□ 0.15
CTCF-202ENST00000401394 HIF1ANQ9NWT6 349 aa16■□□□□ 0.15
CTCF-202ENST00000401394 HIGD1BQ9P298 99 aa16■□□□□ 0.15
CTCF-202ENST00000401394 CSPG4Q6UVK1 2322 aa16■□□□□ 0.15
CTCF-202ENST00000401394 LINC01546A6NGU7 62 aa15.99■□□□□ 0.15
CTCF-202ENST00000401394 ZNF48Q96MX3 618 aaPredicted RBP15.99■□□□□ 0.15
CTCF-202ENST00000401394 FOXI2Q6ZQN5 318 aa15.99■□□□□ 0.15
CTCF-202ENST00000401394 DOPEY2Q9Y3R5 2298 aa15.99■□□□□ 0.15
CTCF-202ENST00000401394 A0A087WX48 190 aa15.99■□□□□ 0.15
CTCF-202ENST00000401394 TGFAP01135 160 aa15.99■□□□□ 0.15
CTCF-202ENST00000401394 SRD5A1P18405 259 aa15.98■□□□□ 0.15
CTCF-202ENST00000401394 PLEKHB2Q96CS7 222 aa15.98■□□□□ 0.15
CTCF-202ENST00000401394 MGPP08493 103 aa15.98■□□□□ 0.15
CTCF-202ENST00000401394 UNQ9165/PRO28630Q6UXU0 137 aa15.98■□□□□ 0.15
CTCF-202ENST00000401394 GNRH2O43555 120 aa15.97■□□□□ 0.15
CTCF-202ENST00000401394 TIMD4Q96H15 378 aa15.97■□□□□ 0.15
CTCF-202ENST00000401394 ATP5LO75964 103 aa15.97■□□□□ 0.15
CTCF-202ENST00000401394 AJUBAQ96IF1 538 aa15.97■□□□□ 0.15
CTCF-202ENST00000401394 C16orf92Q96LL3 132 aa15.96■□□□□ 0.15
CTCF-202ENST00000401394 VKORC1Q9BQB6 163 aa15.96■□□□□ 0.15
CTCF-202ENST00000401394 HLA-DRB4P13762 266 aa15.96■□□□□ 0.15
CTCF-202ENST00000401394 SAA4P35542 130 aa15.96■□□□□ 0.15
CTCF-202ENST00000401394 FOXC1Q12948 553 aa15.96■□□□□ 0.15
CTCF-202ENST00000401394 RASL10AQ92737 203 aa15.96■□□□□ 0.15
CTCF-202ENST00000401394 JPT2Q9H910 190 aa15.96■□□□□ 0.15
CTCF-202ENST00000401394 HLA-DRB4X5D2U9 266 aa15.96■□□□□ 0.15
CTCF-202ENST00000401394 SCGB3A1Q96QR1 104 aa15.96■□□□□ 0.14
CTCF-202ENST00000401394 EDN2P20800 178 aa15.95■□□□□ 0.14
CTCF-202ENST00000401394 PIFOQ8TCI5 191 aa15.95■□□□□ 0.14
CTCF-202ENST00000401394 PTH2Q96A98 100 aa15.95■□□□□ 0.14
CTCF-202ENST00000401394 CLEC2AQ6UVW9 174 aa15.95■□□□□ 0.14
CTCF-202ENST00000401394 GAGE12HA6NDE8 117 aa15.94■□□□□ 0.14
CTCF-202ENST00000401394 SRSF1Q07955 248 aaKnown RBP eCLIP15.94■□□□□ 0.144e-7■□□□□ 9.1
CTCF-202ENST00000401394 TRBV7-3A0A075B6L6 115 aa15.94■□□□□ 0.14
CTCF-202ENST00000401394 IGHV3-11P01762 117 aa15.94■□□□□ 0.14
CTCF-202ENST00000401394 RPL11P62913 178 aaKnown RBP15.94■□□□□ 0.14
CTCF-202ENST00000401394 C20orf78Q9BR46 151 aa15.94■□□□□ 0.14
CTCF-202ENST00000401394 M0R1W7 72 aa15.93■□□□□ 0.14
CTCF-202ENST00000401394 MORN3Q6PF18 240 aaPredicted RBP15.93■□□□□ 0.14
CTCF-202ENST00000401394 ZFP2Q6ZN57 461 aa15.93■□□□□ 0.14
CTCF-202ENST00000401394 SMIM2Q9BVW6 85 aa15.93■□□□□ 0.14
CTCF-202ENST00000401394 CHTOPQ9Y3Y2 248 aaKnown RBP15.93■□□□□ 0.14
CTCF-202ENST00000401394 MUC4Q99102 2169 aa15.93■□□□□ 0.14
CTCF-202ENST00000401394 CD300EQ496F6 205 aaPredicted RBP15.93■□□□□ 0.14
CTCF-202ENST00000401394 LGALS1P09382 135 aaKnown RBP15.92■□□□□ 0.14
CTCF-202ENST00000401394 CCDC144NLQ6NUI1 221 aa15.92■□□□□ 0.14
CTCF-202ENST00000401394 FAM110DQ8TAY7 271 aaPredicted RBP15.92■□□□□ 0.14
CTCF-202ENST00000401394 PGPEP1Q9NXJ5 209 aa15.92■□□□□ 0.14
CTCF-202ENST00000401394 SLC25A16P16260 332 aa15.91■□□□□ 0.14
CTCF-202ENST00000401394 ARL3P36405 182 aa15.91■□□□□ 0.14
CTCF-202ENST00000401394 PRADC1Q9BSG0 188 aa15.91■□□□□ 0.14
CTCF-202ENST00000401394 OR11H12B2RN74 326 aa15.91■□□□□ 0.14
CTCF-202ENST00000401394 F8VRH5 84 aa15.91■□□□□ 0.14
CTCF-202ENST00000401394 S100A4P26447 101 aaKnown RBP15.91■□□□□ 0.14
CTCF-202ENST00000401394 RNASE4P34096 147 aaKnown RBP15.91■□□□□ 0.14
CTCF-202ENST00000401394 OR11H1Q8NG94 326 aa15.91■□□□□ 0.14
CTCF-202ENST00000401394 OR11H2Q8NH07 326 aa15.91■□□□□ 0.14
CTCF-202ENST00000401394 METTL26Q96S19 204 aa15.91■□□□□ 0.14
CTCF-202ENST00000401394 MYMXA0A1B0GTQ4 84 aa15.9■□□□□ 0.14
CTCF-202ENST00000401394 RNF223E7ERA6 249 aa15.9■□□□□ 0.14
CTCF-202ENST00000401394 DUSP14O95147 198 aaKnown RBP15.9■□□□□ 0.14
CTCF-202ENST00000401394 ADORA2A-AS1P86434 159 aa15.9■□□□□ 0.14
CTCF-202ENST00000401394 RRN3P1Q2M238 152 aa15.9■□□□□ 0.14
CTCF-202ENST00000401394 ANXA2RQ3ZCQ2 193 aa15.9■□□□□ 0.14
CTCF-202ENST00000401394 GPHB5Q86YW7 130 aa15.9■□□□□ 0.14
CTCF-202ENST00000401394 SIGMAR1Q99720 223 aa15.9■□□□□ 0.14
CTCF-202ENST00000401394 PRO0461Q9UI25 63 aa15.9■□□□□ 0.14
CTCF-202ENST00000401394 ABCA2Q9BZC7 2435 aa15.9■□□□□ 0.14
CTCF-202ENST00000401394 A0A1B0GWB2 263 aa15.9■□□□□ 0.14
CTCF-202ENST00000401394 SUMO2P61956 95 aaKnown RBP15.9■□□□□ 0.14
CTCF-202ENST00000401394 APOMO95445 188 aa15.9■□□□□ 0.14
CTCF-202ENST00000401394 SRSF2Q01130 221 aaKnown RBP15.9■□□□□ 0.14
CTCF-202ENST00000401394 GAGE13Q4V321 117 aa15.9■□□□□ 0.14
CTCF-202ENST00000401394 C2orf66Q6UXQ4 117 aa15.9■□□□□ 0.14
CTCF-202ENST00000401394 BRD3OSQ6XYD6 125 aa15.9■□□□□ 0.14
CTCF-202ENST00000401394 BAALCQ8WXS3 180 aa15.9■□□□□ 0.14
CTCF-202ENST00000401394 SMPXQ9UHP9 88 aa15.9■□□□□ 0.14
CTCF-202ENST00000401394 LINC01549A6NIU2 74 aa15.89■□□□□ 0.13
CTCF-202ENST00000401394 H7C1H1 209 aa15.89■□□□□ 0.13
CTCF-202ENST00000401394 EBI3Q14213 229 aa15.89■□□□□ 0.13
CTCF-202ENST00000401394 SIRPDQ9H106 197 aa15.89■□□□□ 0.13
CTCF-202ENST00000401394 RPL39P62891 51 aaKnown RBP15.89■□□□□ 0.13
CTCF-202ENST00000401394 ZNF418Q8TF45 676 aaPredicted RBP15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms