RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 PTH2Q96A98 100 aa9.38□□□□□ -0.91
SYNPO-202ENST00000394243 SPTAN1Q13813 2472 aaKnown RBP9.38□□□□□ -0.91
SYNPO-202ENST00000394243 SBF1O95248 1867 aa9.38□□□□□ -0.91
SYNPO-202ENST00000394243 G3V318 75 aa9.38□□□□□ -0.91
SYNPO-202ENST00000394243 DYNAPQ8N1N2 210 aa9.38□□□□□ -0.91
SYNPO-202ENST00000394243 GNRH2O43555 120 aa9.38□□□□□ -0.91
SYNPO-202ENST00000394243 ZNF134P52741 427 aa9.38□□□□□ -0.91
SYNPO-202ENST00000394243 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.37□□□□□ -0.91
SYNPO-202ENST00000394243 IGKV2-29A2NJV5 120 aaPredicted RBP9.37□□□□□ -0.91
SYNPO-202ENST00000394243 CRYGBP07316 175 aa9.37□□□□□ -0.91
SYNPO-202ENST00000394243 HIGD1BQ9P298 99 aa9.37□□□□□ -0.91
SYNPO-202ENST00000394243 SPRY2O43597 315 aa9.37□□□□□ -0.91
SYNPO-202ENST00000394243 RHOHQ15669 191 aa9.37□□□□□ -0.91
SYNPO-202ENST00000394243 WDR86Q86TI4 376 aa9.37□□□□□ -0.91
SYNPO-202ENST00000394243 FOXE3Q13461 319 aa9.37□□□□□ -0.91
SYNPO-202ENST00000394243 RPL39LQ96EH5 51 aaKnown RBP9.37□□□□□ -0.91
SYNPO-202ENST00000394243 RBAKDNA6NC62 111 aa9.36□□□□□ -0.91
SYNPO-202ENST00000394243 GTF3C1Q12789 2109 aa9.36□□□□□ -0.91
SYNPO-202ENST00000394243 ARTNQ5T4W7 220 aa9.36□□□□□ -0.91
SYNPO-202ENST00000394243 ZFP2Q6ZN57 461 aa9.36□□□□□ -0.91
SYNPO-202ENST00000394243 IGHV4-28A0A0C4DH34 117 aa9.36□□□□□ -0.91
SYNPO-202ENST00000394243 IGHV4-4A0A075B6R2 117 aa9.36□□□□□ -0.91
SYNPO-202ENST00000394243 ATP6V0E2Q8NHE4 81 aa9.36□□□□□ -0.91
SYNPO-202ENST00000394243 F5H768 121 aa9.35□□□□□ -0.91
SYNPO-202ENST00000394243 DEFB121Q5J5C9 76 aa9.35□□□□□ -0.91
SYNPO-202ENST00000394243 Q6ZUT4 128 aa9.35□□□□□ -0.91
SYNPO-202ENST00000394243 TRBV10-2A0A0K0K1G8 114 aa9.35□□□□□ -0.91
SYNPO-202ENST00000394243 SRSF2Q01130 221 aaKnown RBP9.35□□□□□ -0.91
SYNPO-202ENST00000394243 PRDM6Q9NQX0 595 aa9.35□□□□□ -0.91
SYNPO-202ENST00000394243 C15orf65H3BRN8 121 aa9.35□□□□□ -0.91
SYNPO-202ENST00000394243 SLC25A29Q8N8R3 303 aa9.35□□□□□ -0.91
SYNPO-202ENST00000394243 NDUFV3P56181 108 aaKnown RBP9.35□□□□□ -0.91
SYNPO-202ENST00000394243 COX7B2Q8TF08 81 aa9.35□□□□□ -0.91
SYNPO-202ENST00000394243 CLEC2BQ92478 149 aa9.35□□□□□ -0.91
SYNPO-202ENST00000394243 A0A0G2JNJ9 132 aa9.34□□□□□ -0.91
SYNPO-202ENST00000394243 LGALS9O00182 355 aa9.34□□□□□ -0.91
SYNPO-202ENST00000394243 WISP1O95388 367 aa9.34□□□□□ -0.91
SYNPO-202ENST00000394243 MT-ATP8P03928 68 aa9.34□□□□□ -0.91
SYNPO-202ENST00000394243 XCL1P47992 114 aa9.34□□□□□ -0.91
SYNPO-202ENST00000394243 Q9UFV3 132 aa9.34□□□□□ -0.91
SYNPO-202ENST00000394243 SIPA1L1O43166 1804 aa9.34□□□□□ -0.91
SYNPO-202ENST00000394243 SPATA12Q7Z6I5 190 aa9.34□□□□□ -0.91
SYNPO-202ENST00000394243 BAALCQ8WXS3 180 aa9.34□□□□□ -0.91
SYNPO-202ENST00000394243 RUSC1-AS1Q66K80 236 aa9.34□□□□□ -0.91
SYNPO-202ENST00000394243 ZNF491Q8N8L2 437 aa9.34□□□□□ -0.91
SYNPO-202ENST00000394243 ANGP03950 147 aaKnown RBP9.33□□□□□ -0.92
SYNPO-202ENST00000394243 A0A096LPF7 62 aa9.33□□□□□ -0.92
SYNPO-202ENST00000394243 DAND5Q8N907 189 aa9.33□□□□□ -0.92
SYNPO-202ENST00000394243 TCF20Q9UGU0 1960 aaKnown RBP9.33□□□□□ -0.92
SYNPO-202ENST00000394243 PCNX2A6NKB5 2137 aa9.33□□□□□ -0.92
SYNPO-202ENST00000394243 H0YGX0 51 aa9.33□□□□□ -0.92
SYNPO-202ENST00000394243 MRPL53Q96EL3 112 aaKnown RBP9.33□□□□□ -0.92
SYNPO-202ENST00000394243 IGHV1-69DA0A0B4J2H0 117 aa9.33□□□□□ -0.92
SYNPO-202ENST00000394243 TMEM105Q8N8V8 129 aa9.33□□□□□ -0.92
SYNPO-202ENST00000394243 DSCAML1Q8TD84 2053 aa9.33□□□□□ -0.92
SYNPO-202ENST00000394243 A0A0U1RQV1 116 aa9.33□□□□□ -0.92
SYNPO-202ENST00000394243 DIAPH2-AS1Q14236 149 aa9.33□□□□□ -0.92
SYNPO-202ENST00000394243 SND1-IT1Q9HBX3 110 aa9.33□□□□□ -0.92
SYNPO-202ENST00000394243 TRAV4A0A0B4J268 109 aa9.33□□□□□ -0.92
SYNPO-202ENST00000394243 NDUFA4O00483 81 aa9.33□□□□□ -0.92
SYNPO-202ENST00000394243 COLQQ9Y215 455 aaPredicted RBP9.33□□□□□ -0.92
SYNPO-202ENST00000394243 CHKB-CPT1BH3BT56 60 aa9.32□□□□□ -0.92
SYNPO-202ENST00000394243 MSRB1Q9NZV6 116 aa9.32□□□□□ -0.92
SYNPO-202ENST00000394243 Q6ZR03 302 aa9.32□□□□□ -0.92
SYNPO-202ENST00000394243 AGPAT4-IT1Q9H0P7 198 aa9.32□□□□□ -0.92
SYNPO-202ENST00000394243 RNF166Q96A37 237 aaPredicted RBP9.32□□□□□ -0.92
SYNPO-202ENST00000394243 IGF2BP2-AS1Q96M15 143 aa9.32□□□□□ -0.92
SYNPO-202ENST00000394243 PKIGQ9Y2B9 76 aa9.32□□□□□ -0.92
SYNPO-202ENST00000394243 RLFQ13129 1914 aa9.32□□□□□ -0.92
SYNPO-202ENST00000394243 B4DSR2 109 aa9.32□□□□□ -0.92
SYNPO-202ENST00000394243 FUSP35637 526 aaKnown RBP eCLIP9.32□□□□□ -0.92
SYNPO-202ENST00000394243 TMEM61Q8N0U2 210 aa9.32□□□□□ -0.92
SYNPO-202ENST00000394243 FRMD6-AS1P0C7T7 363 aa9.32□□□□□ -0.92
SYNPO-202ENST00000394243 MP68P56378 58 aa9.32□□□□□ -0.92
SYNPO-202ENST00000394243 GTSF1Q8WW33 167 aa9.32□□□□□ -0.92
SYNPO-202ENST00000394243 A0A0J9YXV3 536 aa9.31□□□□□ -0.92
SYNPO-202ENST00000394243 MPLKIPQ8TAP9 179 aa9.31□□□□□ -0.92
SYNPO-202ENST00000394243 MDS2Q8NDY4 140 aa9.31□□□□□ -0.92
SYNPO-202ENST00000394243 SPTSSBQ8NFR3 76 aa9.31□□□□□ -0.92
SYNPO-202ENST00000394243 E7EQL1 145 aa9.31□□□□□ -0.92
SYNPO-202ENST00000394243 C14orf132Q9NPU4 83 aa9.31□□□□□ -0.92
SYNPO-202ENST00000394243 RSPO1Q2MKA7 263 aaPredicted RBP9.31□□□□□ -0.92
SYNPO-202ENST00000394243 USF3Q68DE3 2245 aa9.31□□□□□ -0.92
SYNPO-202ENST00000394243 C5orf38Q86SI9 138 aa9.31□□□□□ -0.92
SYNPO-202ENST00000394243 BPESC1Q9GZL8 116 aa9.31□□□□□ -0.92
SYNPO-202ENST00000394243 IGFBPL1Q8WX77 278 aa9.3□□□□□ -0.92
SYNPO-202ENST00000394243 CACNA1BQ00975 2339 aa9.3□□□□□ -0.92
SYNPO-202ENST00000394243 NREPQ16612 68 aa9.3□□□□□ -0.92
SYNPO-202ENST00000394243 ZNF524Q96C55 264 aa9.3□□□□□ -0.92
SYNPO-202ENST00000394243 SPATA25Q9BR10 227 aa9.3□□□□□ -0.92
SYNPO-202ENST00000394243 VSIG2Q96IQ7 327 aa9.3□□□□□ -0.92
SYNPO-202ENST00000394243 CNOT1A5YKK6 2376 aaKnown RBP9.3□□□□□ -0.92
SYNPO-202ENST00000394243 MBD3L4A6NDZ8 208 aaPredicted RBP9.3□□□□□ -0.92
SYNPO-202ENST00000394243 MBD3L3A6NE82 208 aaPredicted RBP9.3□□□□□ -0.92
SYNPO-202ENST00000394243 MBD3L5A6NJ08 208 aaPredicted RBP9.3□□□□□ -0.92
SYNPO-202ENST00000394243 H3BT86 120 aa9.3□□□□□ -0.92
SYNPO-202ENST00000394243 MBD3L2Q8NHZ7 208 aaPredicted RBP9.3□□□□□ -0.92
SYNPO-202ENST00000394243 ATP5G1P05496 136 aa9.3□□□□□ -0.92
SYNPO-202ENST00000394243 E9PLD3 99 aa9.3□□□□□ -0.92
SYNPO-202ENST00000394243 TCL1BO95988 128 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms