RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 GNRH2O43555 120 aa12.7□□□□□ -0.38
VPS54-201ENST00000272322 HTN1P15515 57 aa12.7□□□□□ -0.38
VPS54-201ENST00000272322 C14orf178Q8N769 122 aaPredicted RBP12.7□□□□□ -0.38
VPS54-201ENST00000272322 FOXC2Q99958 501 aa12.7□□□□□ -0.38
VPS54-201ENST00000272322 TMEM160Q9NX00 188 aa12.7□□□□□ -0.38
VPS54-201ENST00000272322 RNF151Q2KHN1 245 aa12.69□□□□□ -0.38
VPS54-201ENST00000272322 BVES-AS1Q5T3Y7 98 aa12.69□□□□□ -0.38
VPS54-201ENST00000272322 ZNF493Q6ZR52 646 aa12.69□□□□□ -0.38
VPS54-201ENST00000272322 OR4C5Q8NGB2 326 aa12.69□□□□□ -0.38
VPS54-201ENST00000272322 PRORYQ9H606 182 aa12.69□□□□□ -0.38
VPS54-201ENST00000272322 TRBV7-1A0A0A6YYK4 115 aa12.68□□□□□ -0.38
VPS54-201ENST00000272322 AMMECR1LQ6DCA0 310 aa12.68□□□□□ -0.38
VPS54-201ENST00000272322 GTSCR1Q86UQ5 136 aa12.68□□□□□ -0.38
VPS54-201ENST00000272322 A0A1B0GW15 77 aa12.67□□□□□ -0.38
VPS54-201ENST00000272322 IGHV4-59P01825 116 aa12.67□□□□□ -0.38
VPS54-201ENST00000272322 SLC50A1Q9BRV3 221 aa12.67□□□□□ -0.38
VPS54-201ENST00000272322 RHPN1-AS1Q9BWJ2 59 aa12.67□□□□□ -0.38
VPS54-201ENST00000272322 SMIM15Q7Z3B0 74 aa12.67□□□□□ -0.38
VPS54-201ENST00000272322 RPS20P60866 119 aaKnown RBP12.66□□□□□ -0.38
VPS54-201ENST00000272322 TGFAP01135 160 aa12.65□□□□□ -0.38
VPS54-201ENST00000272322 RPL39LQ96EH5 51 aaKnown RBP12.65□□□□□ -0.38
VPS54-201ENST00000272322 SPOCK3Q9BQ16 436 aa12.65□□□□□ -0.38
VPS54-201ENST00000272322 JPT2Q9H910 190 aa12.65□□□□□ -0.38
VPS54-201ENST00000272322 NPFFR1Q9GZQ6 430 aa12.65□□□□□ -0.38
VPS54-201ENST00000272322 IGKV2D-26A0A0A0MRZ7 120 aa12.65□□□□□ -0.38
VPS54-201ENST00000272322 TRAV8-6A0A0B4J262 113 aa12.65□□□□□ -0.38
VPS54-201ENST00000272322 OR10J6PQ8NGY7 276 aa12.65□□□□□ -0.38
VPS54-201ENST00000272322 C10orf105Q8TEF2 133 aa12.65□□□□□ -0.38
VPS54-201ENST00000272322 TRAV12-2A0A075B6T6 113 aa12.64□□□□□ -0.39
VPS54-201ENST00000272322 ZNF688P0C7X2 276 aa12.64□□□□□ -0.39
VPS54-201ENST00000272322 ANXA2RQ3ZCQ2 193 aa12.64□□□□□ -0.39
VPS54-201ENST00000272322 PHLDA3Q9Y5J5 127 aa12.64□□□□□ -0.39
VPS54-201ENST00000272322 TAX1BP3O14907 124 aa12.64□□□□□ -0.39
VPS54-201ENST00000272322 MSMBP08118 114 aa12.64□□□□□ -0.39
VPS54-201ENST00000272322 C2orf91Q6ZV80 131 aa12.64□□□□□ -0.39
VPS54-201ENST00000272322 OR2K2Q8NGT1 345 aa12.64□□□□□ -0.39
VPS54-201ENST00000272322 COX8AP10176 69 aa12.64□□□□□ -0.39
VPS54-201ENST00000272322 EMP1P54849 157 aa12.64□□□□□ -0.39
VPS54-201ENST00000272322 GPHB5Q86YW7 130 aa12.64□□□□□ -0.39
VPS54-201ENST00000272322 RNASE8Q8TDE3 154 aaKnown RBP12.64□□□□□ -0.39
VPS54-201ENST00000272322 FCER1GP30273 86 aa12.63□□□□□ -0.39
VPS54-201ENST00000272322 ZNF469Q96JG9 3925 aaPredicted RBP12.63□□□□□ -0.39
VPS54-201ENST00000272322 FLNAP21333 2647 aaKnown RBP12.63□□□□□ -0.39
VPS54-201ENST00000272322 S100A7P31151 101 aa12.63□□□□□ -0.39
VPS54-201ENST00000272322 RAB9AP51151 201 aa12.63□□□□□ -0.39
VPS54-201ENST00000272322 FAM74A4Q5TZK3 123 aa12.63□□□□□ -0.39
VPS54-201ENST00000272322 IGHV7-4-1A0A0J9YVY3 117 aa12.63□□□□□ -0.39
VPS54-201ENST00000272322 SMIM17P0DL12 118 aa12.63□□□□□ -0.39
VPS54-201ENST00000272322 LINC01559Q495D7 138 aa12.63□□□□□ -0.39
VPS54-201ENST00000272322 A0A087WWL8 130 aa12.62□□□□□ -0.39
VPS54-201ENST00000272322 HIVEP2P31629 2446 aa12.62□□□□□ -0.39
VPS54-201ENST00000272322 F5H697 171 aa12.62□□□□□ -0.39
VPS54-201ENST00000272322 GCSHP23434 173 aa12.62□□□□□ -0.39
VPS54-201ENST00000272322 UBE2V1Q13404 147 aa12.62□□□□□ -0.39
VPS54-201ENST00000272322 C12orf54Q6X4T0 127 aa12.62□□□□□ -0.39
VPS54-201ENST00000272322 U3KQK5 164 aa12.62□□□□□ -0.39
VPS54-201ENST00000272322 TRAV12-3A0A0B4J271 114 aa12.61□□□□□ -0.39
VPS54-201ENST00000272322 DEFB112Q30KQ8 113 aa12.61□□□□□ -0.39
VPS54-201ENST00000272322 ZC2HC1BQ5TFG8 222 aa12.61□□□□□ -0.39
VPS54-201ENST00000272322 FN1P02751 2386 aaKnown RBP12.61□□□□□ -0.39
VPS54-201ENST00000272322 TMEM97Q5BJF2 176 aa12.61□□□□□ -0.39
VPS54-201ENST00000272322 DUX3Q96PT4 197 aa12.61□□□□□ -0.39
VPS54-201ENST00000272322 SFTPCP11686 197 aa12.61□□□□□ -0.39
VPS54-201ENST00000272322 NBPF19A0A087WUL8 3843 aa12.61□□□□□ -0.39
VPS54-201ENST00000272322 MRPL52Q86TS9 123 aaKnown RBP12.6□□□□□ -0.39
VPS54-201ENST00000272322 PPP1R14DQ9NXH3 145 aa12.6□□□□□ -0.39
VPS54-201ENST00000272322 MRPL35Q9NZE8 188 aaKnown RBP12.6□□□□□ -0.39
VPS54-201ENST00000272322 TMEM8BA6NDV4 472 aa12.6□□□□□ -0.39
VPS54-201ENST00000272322 KHDC1LQ5JSQ8 128 aa12.6□□□□□ -0.39
VPS54-201ENST00000272322 LINC00477Q96M19 166 aa12.6□□□□□ -0.39
VPS54-201ENST00000272322 H3BUT2 72 aa12.6□□□□□ -0.39
VPS54-201ENST00000272322 GAGE1Q13065 139 aa12.6□□□□□ -0.39
VPS54-201ENST00000272322 ORAOV1Q8WV07 137 aa12.6□□□□□ -0.39
VPS54-201ENST00000272322 PRM2P04554 102 aa12.59□□□□□ -0.39
VPS54-201ENST00000272322 MS4A6AQ9H2W1 248 aa12.59□□□□□ -0.39
VPS54-201ENST00000272322 BEX4Q9NWD9 120 aaPredicted RBP12.59□□□□□ -0.39
VPS54-201ENST00000272322 CD5LO43866 347 aa12.59□□□□□ -0.39
VPS54-201ENST00000272322 DEFB136Q30KP8 78 aa12.59□□□□□ -0.39
VPS54-201ENST00000272322 RNF223E7ERA6 249 aa12.58□□□□□ -0.39
VPS54-201ENST00000272322 PSMG4Q5JS54 123 aa12.58□□□□□ -0.39
VPS54-201ENST00000272322 ZFAND2AQ8N6M9 145 aa12.58□□□□□ -0.39
VPS54-201ENST00000272322 C11orf44Q8N8P7 122 aa12.58□□□□□ -0.39
VPS54-201ENST00000272322 AP1S3Q96PC3 154 aa12.58□□□□□ -0.39
VPS54-201ENST00000272322 K7ERJ3 54 aa12.58□□□□□ -0.4
VPS54-201ENST00000272322 FAM223BA6NKX1 122 aa12.58□□□□□ -0.4
VPS54-201ENST00000272322 SYNJ2BPP57105 145 aa12.58□□□□□ -0.4
VPS54-201ENST00000272322 FAM223AQ8IWN6 122 aa12.58□□□□□ -0.4
VPS54-201ENST00000272322 MUC4Q99102 2169 aa12.58□□□□□ -0.4
VPS54-201ENST00000272322 ITPR3Q14573 2671 aa12.57□□□□□ -0.4
VPS54-201ENST00000272322 FOSL1P15407 271 aa12.57□□□□□ -0.4
VPS54-201ENST00000272322 LGALS9BQ3B8N2 356 aa12.57□□□□□ -0.4
VPS54-201ENST00000272322 LGALS9CQ6DKI2 356 aa12.57□□□□□ -0.4
VPS54-201ENST00000272322 MYOZ3Q8TDC0 251 aa12.57□□□□□ -0.4
VPS54-201ENST00000272322 IGHG2P01859 326 aa12.57□□□□□ -0.4
VPS54-201ENST00000272322 C9orf47Q6ZRZ4 202 aa12.57□□□□□ -0.4
VPS54-201ENST00000272322 C9orf139Q6ZV77 190 aa12.57□□□□□ -0.4
VPS54-201ENST00000272322 GATD1Q8NB37 220 aa12.57□□□□□ -0.4
VPS54-201ENST00000272322 KLK9Q9UKQ9 250 aa12.57□□□□□ -0.4
VPS54-201ENST00000272322 DEFB125Q8N687 156 aa12.57□□□□□ -0.4
VPS54-201ENST00000272322 CD7P09564 240 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 115.6 ms