RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 C11orf52Q96A22 123 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 MARCH3Q86UD3 253 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 WI2-2373I1.2A0A1W2PRP0 233 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 CSRP1P21291 193 aaKnown RBP2.8□□□□□ -1.96
SCN1A-221ENST00000641996 YPEL3P61236 119 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-221ENST00000641996 ABCC3O15438 1527 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 STRCQ7RTU9 1775 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 TRBV27A0A0K0K1C4 114 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 CXCL6P80162 114 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 PRR4Q16378 134 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 SP5Q6BEB4 398 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-221ENST00000641996 MKXQ8IYA7 352 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 RPP25LQ8N5L8 163 aaKnown RBP2.8□□□□□ -1.96
SCN1A-221ENST00000641996 LINC01356Q8N9X3 169 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 PHLDA3Q9Y5J5 127 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 C15orf65H3BRN8 121 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 IGHV1-8P0DP01 117 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 SCXQ7RTU7 201 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 CLDN14O95500 239 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 LTAP01374 205 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 RHOHQ15669 191 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 FAM53AQ6NSI3 398 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-221ENST00000641996 HILS1P60008 231 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 NFE4Q86UQ8 179 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 MORN4Q8NDC4 146 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 LOXP28300 417 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-221ENST00000641996 MRPS36P82909 103 aaKnown RBP2.8□□□□□ -1.96
SCN1A-221ENST00000641996 SPANXN1Q5VSR9 72 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 IFI27L1Q96BM0 104 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 PIK3C2AO00443 1686 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 SRRM4A7MD48 611 aaKnown RBP2.8□□□□□ -1.96
SCN1A-221ENST00000641996 K7ERS5 55 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 CRYGAP11844 174 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 GVQW1Q8N7I0 195 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 MAST2Q6P0Q8 1798 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 SLC25A16P16260 332 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 LY6DQ14210 128 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 TRAV13-2A0A0B4J235 113 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 TCRBV4S1A1TA0A5B7 111 aa2.8□□□□□ -1.96
SCN1A-221ENST00000641996 LCA10Q71F78 164 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 PRSS33Q8NF86 280 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 GTSF1Q8WW33 167 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 ZNF355PQ9NSJ1 428 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 ABCA8O94911 1581 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 LOC101059948A0A1B0GTJ6 334 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 LST1O00453 97 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 NPYP01303 97 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 NDPQ00604 133 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 PLAC1Q9HBJ0 212 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 SCN7AQ01118 1682 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 LINC00269Q8N2A0 174 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 C5orf67F2Z3F1 127 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 IER5LQ5T953 404 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 LINC00643Q86TS7 51 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 TMEM30BQ3MIR4 351 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 ZNF492Q9P255 531 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 TEP1Q99973 2627 aaKnown RBP2.79□□□□□ -1.96
SCN1A-221ENST00000641996 LOC730098B7Z3J9 87 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 H0YIZ8 118 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 LMO1P25800 156 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 FAM30AQ9NZY2 134 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 PRG4Q92954 1404 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-221ENST00000641996 SCO2A0A1W2PP80 73 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 NXPH4O95158 308 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 ACYP1P07311 99 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 Q5XG85 94 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 ZCCHC11Q5TAX3 1644 aaKnown RBP2.79□□□□□ -1.96
SCN1A-221ENST00000641996 RGPD1P0DJD0 1748 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 SAMD9LQ8IVG5 1584 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 ZNF329Q86UD4 541 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 TNS2Q63HR2 1409 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 TRGV5A0A0B4J1U4 118 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 OXTP01178 125 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 ZNF117Q03924 483 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 SPINK9Q5DT21 86 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 CXCL16Q9H2A7 254 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 A0A1W2PQD3 144 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 LINC01619G3V211 115 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 FAM120AOSQ5T036 256 aa2.79□□□□□ -1.96
SCN1A-221ENST00000641996 CASC2Q6XLA1 102 aa2.78□□□□□ -1.96
SCN1A-221ENST00000641996 Q6ZS92 163 aa2.78□□□□□ -1.96
SCN1A-221ENST00000641996 LYZL2Q7Z4W2 148 aa2.78□□□□□ -1.96
SCN1A-221ENST00000641996 C5orf38Q86SI9 138 aa2.78□□□□□ -1.96
SCN1A-221ENST00000641996 TNFRSF12AQ9NP84 129 aa2.78□□□□□ -1.96
SCN1A-221ENST00000641996 Q9HAA7 133 aa2.78□□□□□ -1.96
SCN1A-221ENST00000641996 DIP2BQ9P265 1576 aa2.78□□□□□ -1.96
SCN1A-221ENST00000641996 MYMXA0A1B0GTQ4 84 aa2.78□□□□□ -1.96
SCN1A-221ENST00000641996 PHLDA1Q8WV24 401 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-221ENST00000641996 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP2.78□□□□□ -1.96
SCN1A-221ENST00000641996 TRGV8A0A0C4DH27 118 aa2.78□□□□□ -1.96
SCN1A-221ENST00000641996 MRPS12O15235 138 aaKnown RBP2.78□□□□□ -1.96
SCN1A-221ENST00000641996 LEPROTO15243 131 aa2.78□□□□□ -1.96
SCN1A-221ENST00000641996 C11orf53Q8IXP5 236 aa2.78□□□□□ -1.96
SCN1A-221ENST00000641996 ATP7AQ04656 1500 aa2.78□□□□□ -1.96
SCN1A-221ENST00000641996 IGLV1-36A0A0B4J1U3 117 aa2.78□□□□□ -1.96
SCN1A-221ENST00000641996 ETV2O00321 342 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-221ENST00000641996 LINC00313P59037 77 aa2.78□□□□□ -1.96
SCN1A-221ENST00000641996 COX7A1P24310 79 aa2.78□□□□□ -1.96
SCN1A-221ENST00000641996 IGHV3OR15-7A0A075B7D8 119 aa2.78□□□□□ -1.96
SCN1A-221ENST00000641996 MIR17HGQ75NE6 70 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms