RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 C11orf21Q9P2W6 132 aa10.47□□□□□ -0.73
PTPN1-202ENST00000541713 ODF3BA8MYP8 253 aa10.47□□□□□ -0.73
PTPN1-202ENST00000541713 PSG9Q00887 426 aa10.47□□□□□ -0.73
PTPN1-202ENST00000541713 UNQ9165/PRO28630Q6UXU0 137 aa10.47□□□□□ -0.73
PTPN1-202ENST00000541713 GFRA4Q9GZZ7 299 aa10.47□□□□□ -0.73
PTPN1-202ENST00000541713 NEGR1Q7Z3B1 354 aa10.46□□□□□ -0.73
PTPN1-202ENST00000541713 DUX5Q96PT3 197 aa10.46□□□□□ -0.73
PTPN1-202ENST00000541713 TMEM160Q9NX00 188 aa10.46□□□□□ -0.73
PTPN1-202ENST00000541713 M0R1W7 72 aa10.46□□□□□ -0.73
PTPN1-202ENST00000541713 S100A4P26447 101 aaKnown RBP10.46□□□□□ -0.73
PTPN1-202ENST00000541713 TMEM78Q5T7P6 136 aa10.46□□□□□ -0.73
PTPN1-202ENST00000541713 TTC9CQ8N5M4 171 aa10.46□□□□□ -0.73
PTPN1-202ENST00000541713 CCDC140Q96MF4 163 aa10.46□□□□□ -0.73
PTPN1-202ENST00000541713 MXRA5Q9NR99 2828 aa10.46□□□□□ -0.74
PTPN1-202ENST00000541713 FABP5P3A8MUU1 101 aa10.46□□□□□ -0.74
PTPN1-202ENST00000541713 MGPP08493 103 aa10.46□□□□□ -0.74
PTPN1-202ENST00000541713 IGHV4-38-2P0DP08 117 aa10.46□□□□□ -0.74
PTPN1-202ENST00000541713 GTSCR1Q86UQ5 136 aa10.46□□□□□ -0.74
PTPN1-202ENST00000541713 A0A096LNJ9 63 aa10.45□□□□□ -0.74
PTPN1-202ENST00000541713 SAPCD1Q5SSQ6 148 aa10.45□□□□□ -0.74
PTPN1-202ENST00000541713 C11orf71Q6IPW1 123 aa10.45□□□□□ -0.74
PTPN1-202ENST00000541713 RNF5Q99942 180 aa10.45□□□□□ -0.74
PTPN1-202ENST00000541713 EFNA4P52798 201 aa10.45□□□□□ -0.74
PTPN1-202ENST00000541713 BVES-AS1Q5T3Y7 98 aa10.45□□□□□ -0.74
PTPN1-202ENST00000541713 IFI27L1Q96BM0 104 aa10.45□□□□□ -0.74
PTPN1-202ENST00000541713 FOXC2Q99958 501 aa10.45□□□□□ -0.74
PTPN1-202ENST00000541713 NPFFO15130 113 aa10.45□□□□□ -0.74
PTPN1-202ENST00000541713 HIST1H1AQ02539 215 aaPredicted RBP10.45□□□□□ -0.74
PTPN1-202ENST00000541713 TRAV8-6A0A0B4J262 113 aa10.44□□□□□ -0.74
PTPN1-202ENST00000541713 CENPVL3A0A0U1RRI6 287 aa10.44□□□□□ -0.74
PTPN1-202ENST00000541713 BUB3O43684 328 aa10.44□□□□□ -0.74
PTPN1-202ENST00000541713 METTL26Q96S19 204 aa10.44□□□□□ -0.74
PTPN1-202ENST00000541713 MRPS16Q9Y3D3 137 aaKnown RBP10.44□□□□□ -0.74
PTPN1-202ENST00000541713 PRRC2AP48634 2157 aaKnown RBP10.44□□□□□ -0.74
PTPN1-202ENST00000541713 H3BUX3 64 aa10.44□□□□□ -0.74
PTPN1-202ENST00000541713 EMP1P54849 157 aa10.44□□□□□ -0.74
PTPN1-202ENST00000541713 ATP5G2Q06055 141 aa10.44□□□□□ -0.74
PTPN1-202ENST00000541713 AP1S3Q96PC3 154 aa10.44□□□□□ -0.74
PTPN1-202ENST00000541713 SIRPDQ9H106 197 aa10.44□□□□□ -0.74
PTPN1-202ENST00000541713 IGHV4-61A0A0C4DH41 118 aa10.43□□□□□ -0.74
PTPN1-202ENST00000541713 IGHV2-70DA0A0C4DH43 119 aa10.43□□□□□ -0.74
PTPN1-202ENST00000541713 OVOL3O00110 214 aa10.43□□□□□ -0.74
PTPN1-202ENST00000541713 GCSHP23434 173 aa10.43□□□□□ -0.74
PTPN1-202ENST00000541713 BMI1P35226 326 aa10.43□□□□□ -0.74
PTPN1-202ENST00000541713 PET117Q6UWS5 81 aa10.43□□□□□ -0.74
PTPN1-202ENST00000541713 C8orf86Q6ZUL3 223 aa10.43□□□□□ -0.74
PTPN1-202ENST00000541713 ST20Q9HBF5 79 aa10.43□□□□□ -0.74
PTPN1-202ENST00000541713 NIPBLQ6KC79 2804 aaeCLIP10.43□□□□□ -0.74
PTPN1-202ENST00000541713 A1L4Q6 167 aa10.43□□□□□ -0.74
PTPN1-202ENST00000541713 SMAD7O15105 426 aaKnown RBP10.43□□□□□ -0.74
PTPN1-202ENST00000541713 SCGB2A1O75556 95 aa10.43□□□□□ -0.74
PTPN1-202ENST00000541713 SFTA2Q6UW10 78 aa10.43□□□□□ -0.74
PTPN1-202ENST00000541713 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.43□□□□□ -0.74
PTPN1-202ENST00000541713 TMEM158Q8WZ71 300 aa10.43□□□□□ -0.74
PTPN1-202ENST00000541713 IGKV3D-20A0A0C4DH25 116 aa10.43□□□□□ -0.74
PTPN1-202ENST00000541713 H3BUT2 72 aa10.43□□□□□ -0.74
PTPN1-202ENST00000541713 RNASE4P34096 147 aaKnown RBP10.43□□□□□ -0.74
PTPN1-202ENST00000541713 C10orf99Q6UWK7 81 aa10.43□□□□□ -0.74
PTPN1-202ENST00000541713 S100A7AQ86SG5 101 aa10.43□□□□□ -0.74
PTPN1-202ENST00000541713 DTX2Q86UW9 622 aa10.43□□□□□ -0.74
PTPN1-202ENST00000541713 SMIM12Q96EX1 92 aa10.43□□□□□ -0.74
PTPN1-202ENST00000541713 TNFRSF6BO95407 300 aa10.42□□□□□ -0.74
PTPN1-202ENST00000541713 HBDP02042 147 aa10.42□□□□□ -0.74
PTPN1-202ENST00000541713 ARL3P36405 182 aa10.42□□□□□ -0.74
PTPN1-202ENST00000541713 LMO4P61968 165 aa10.42□□□□□ -0.74
PTPN1-202ENST00000541713 ZNF502Q8TBZ5 544 aa10.42□□□□□ -0.74
PTPN1-202ENST00000541713 IGHV4-39P01824 125 aa10.42□□□□□ -0.74
PTPN1-202ENST00000541713 SCRT2Q9NQ03 307 aa10.42□□□□□ -0.74
PTPN1-202ENST00000541713 PCP4P48539 62 aa10.42□□□□□ -0.74
PTPN1-202ENST00000541713 ATP5J2P56134 94 aa10.42□□□□□ -0.74
PTPN1-202ENST00000541713 UBE2V1Q13404 147 aa10.42□□□□□ -0.74
PTPN1-202ENST00000541713 LYPD1Q8N2G4 141 aa10.42□□□□□ -0.74
PTPN1-202ENST00000541713 C14orf178Q8N769 122 aaPredicted RBP10.42□□□□□ -0.74
PTPN1-202ENST00000541713 MAP1LC3AQ9H492 121 aa10.42□□□□□ -0.74
PTPN1-202ENST00000541713 TAX1BP3O14907 124 aa10.41□□□□□ -0.74
PTPN1-202ENST00000541713 PRR9Q5T870 116 aa10.41□□□□□ -0.74
PTPN1-202ENST00000541713 TRAV41A0A0B4J266 112 aa10.41□□□□□ -0.74
PTPN1-202ENST00000541713 FAM231BA6NCW3 169 aa10.41□□□□□ -0.74
PTPN1-202ENST00000541713 UBE2E1P51965 193 aa10.41□□□□□ -0.74
PTPN1-202ENST00000541713 EEF1AKMT3Q96AZ1 226 aa10.41□□□□□ -0.74
PTPN1-202ENST00000541713 CHD6Q8TD26 2715 aa10.41□□□□□ -0.74
PTPN1-202ENST00000541713 K7ERJ3 54 aa10.41□□□□□ -0.74
PTPN1-202ENST00000541713 MTURNQ8N3F0 131 aa10.41□□□□□ -0.74
PTPN1-202ENST00000541713 GNRH2O43555 120 aa10.4□□□□□ -0.74
PTPN1-202ENST00000541713 PAX8Q06710 450 aa10.4□□□□□ -0.74
PTPN1-202ENST00000541713 C20orf173Q96LM9 149 aa10.4□□□□□ -0.74
PTPN1-202ENST00000541713 VPS25Q9BRG1 176 aa10.4□□□□□ -0.74
PTPN1-202ENST00000541713 IGKV2D-26A0A0A0MRZ7 120 aa10.4□□□□□ -0.74
PTPN1-202ENST00000541713 CLPSL1A2RUU4 121 aa10.4□□□□□ -0.74
PTPN1-202ENST00000541713 PDE6HQ13956 83 aa10.4□□□□□ -0.74
PTPN1-202ENST00000541713 LINC01545Q5VT33 79 aa10.4□□□□□ -0.74
PTPN1-202ENST00000541713 OR2K2Q8NGT1 345 aa10.4□□□□□ -0.74
PTPN1-202ENST00000541713 FBXL19-AS1Q494R0 122 aa10.39□□□□□ -0.75
PTPN1-202ENST00000541713 ZFAND3Q9H8U3 227 aa10.39□□□□□ -0.75
PTPN1-202ENST00000541713 TMEM97Q5BJF2 176 aa10.39□□□□□ -0.75
PTPN1-202ENST00000541713 FAM74A4Q5TZK3 123 aa10.39□□□□□ -0.75
PTPN1-202ENST00000541713 Q8N6K4 173 aa10.39□□□□□ -0.75
PTPN1-202ENST00000541713 FAM110DQ8TAY7 271 aaPredicted RBP10.39□□□□□ -0.75
PTPN1-202ENST00000541713 LINC00477Q96M19 166 aa10.39□□□□□ -0.75
PTPN1-202ENST00000541713 SMIM15Q7Z3B0 74 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms