RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 TRAV9-2A0A087WT02 112 aa12.99□□□□□ -0.33
USP28-208ENST00000540438 C16orf92Q96LL3 132 aa12.99□□□□□ -0.33
USP28-208ENST00000540438 GFRA4Q9GZZ7 299 aa12.99□□□□□ -0.33
USP28-208ENST00000540438 FLNAP21333 2647 aaKnown RBP12.99□□□□□ -0.33
USP28-208ENST00000540438 C8orf86Q6ZUL3 223 aa12.99□□□□□ -0.33
USP28-208ENST00000540438 HIF1ANQ9NWT6 349 aa12.99□□□□□ -0.33
USP28-208ENST00000540438 IGKV3-20P01619 116 aa12.98□□□□□ -0.33
USP28-208ENST00000540438 OR10AG1Q8NH19 301 aa12.98□□□□□ -0.33
USP28-208ENST00000540438 SMIM12Q96EX1 92 aa12.98□□□□□ -0.33
USP28-208ENST00000540438 C20orf173Q96LM9 149 aa12.98□□□□□ -0.33
USP28-208ENST00000540438 IGHV1-69DA0A0B4J2H0 117 aa12.98□□□□□ -0.33
USP28-208ENST00000540438 IGHV1-69P01742 117 aa12.98□□□□□ -0.33
USP28-208ENST00000540438 ARL3P36405 182 aa12.98□□□□□ -0.33
USP28-208ENST00000540438 RNF24Q9Y225 148 aa12.98□□□□□ -0.33
USP28-208ENST00000540438 TRAV8-2A0A0B4J237 113 aa12.97□□□□□ -0.33
USP28-208ENST00000540438 TM4SF20Q53R12 229 aa12.97□□□□□ -0.33
USP28-208ENST00000540438 PRR9Q5T870 116 aa12.97□□□□□ -0.33
USP28-208ENST00000540438 LYPD1Q8N2G4 141 aa12.97□□□□□ -0.33
USP28-208ENST00000540438 EEF1AKMT3Q96AZ1 226 aa12.97□□□□□ -0.33
USP28-208ENST00000540438 NDFIP1Q9BT67 221 aa12.97□□□□□ -0.33
USP28-208ENST00000540438 A0A087X0K7 114 aa12.97□□□□□ -0.33
USP28-208ENST00000540438 OR5AL1P0C617 328 aa12.97□□□□□ -0.33
USP28-208ENST00000540438 METTL26Q96S19 204 aa12.97□□□□□ -0.33
USP28-208ENST00000540438 ITPR2Q14571 2701 aa12.97□□□□□ -0.33
USP28-208ENST00000540438 MPV17L2Q567V2 206 aa12.97□□□□□ -0.33
USP28-208ENST00000540438 MAP1LC3CQ9BXW4 147 aa12.97□□□□□ -0.33
USP28-208ENST00000540438 PAX8Q06710 450 aa12.96□□□□□ -0.33
USP28-208ENST00000540438 PDE6HQ13956 83 aa12.96□□□□□ -0.33
USP28-208ENST00000540438 IGKV3D-20A0A0C4DH25 116 aa12.96□□□□□ -0.34
USP28-208ENST00000540438 CLEC2AQ6UVW9 174 aa12.96□□□□□ -0.34
USP28-208ENST00000540438 C16orf54Q6UWD8 224 aa12.96□□□□□ -0.34
USP28-208ENST00000540438 ZNF738Q8NE65 137 aa12.96□□□□□ -0.34
USP28-208ENST00000540438 PIMREGQ9BSJ6 248 aa12.96□□□□□ -0.34
USP28-208ENST00000540438 A0A096LNJ9 63 aa12.95□□□□□ -0.34
USP28-208ENST00000540438 OOSP1A8MZH6 123 aa12.95□□□□□ -0.34
USP28-208ENST00000540438 FAM104BQ5XKR9 115 aa12.95□□□□□ -0.34
USP28-208ENST00000540438 TTTY13Q9BZ97 58 aa12.95□□□□□ -0.34
USP28-208ENST00000540438 ITPR3Q14573 2671 aa12.95□□□□□ -0.34
USP28-208ENST00000540438 NACAE9PAV3 2078 aa12.95□□□□□ -0.34
USP28-208ENST00000540438 CACNG7P62955 275 aa12.94□□□□□ -0.34
USP28-208ENST00000540438 H3BVH4 76 aa12.94□□□□□ -0.34
USP28-208ENST00000540438 SAPCD1Q5SSQ6 148 aa12.94□□□□□ -0.34
USP28-208ENST00000540438 MOB4Q9Y3A3 225 aa12.94□□□□□ -0.34
USP28-208ENST00000540438 FABP5P3A8MUU1 101 aa12.94□□□□□ -0.34
USP28-208ENST00000540438 M0R381 172 aa12.94□□□□□ -0.34
USP28-208ENST00000540438 ORMDL3Q8N138 153 aa12.94□□□□□ -0.34
USP28-208ENST00000540438 NAA38Q9BRA0 125 aaKnown RBP12.94□□□□□ -0.34
USP28-208ENST00000540438 NUDT3O95989 172 aa12.93□□□□□ -0.34
USP28-208ENST00000540438 TMEM78Q5T7P6 136 aa12.93□□□□□ -0.34
USP28-208ENST00000540438 KLHDC1Q8N7A1 406 aa12.93□□□□□ -0.34
USP28-208ENST00000540438 TCF21O43680 179 aa12.92□□□□□ -0.34
USP28-208ENST00000540438 IGHV4-59P01825 116 aa12.92□□□□□ -0.34
USP28-208ENST00000540438 C10orf105Q8TEF2 133 aa12.92□□□□□ -0.34
USP28-208ENST00000540438 CHCHD1Q96BP2 118 aaKnown RBP12.92□□□□□ -0.34
USP28-208ENST00000540438 FAM231BA6NCW3 169 aa12.92□□□□□ -0.34
USP28-208ENST00000540438 HIST1H1AQ02539 215 aaPredicted RBP12.92□□□□□ -0.34
USP28-208ENST00000540438 LBHQ53QV2 105 aaPredicted RBP12.92□□□□□ -0.34
USP28-208ENST00000540438 SPOCK3Q9BQ16 436 aa12.92□□□□□ -0.34
USP28-208ENST00000540438 ZNF747Q9BV97 191 aa12.92□□□□□ -0.34
USP28-208ENST00000540438 CBY3A6NI87 242 aa12.91□□□□□ -0.34
USP28-208ENST00000540438 SCGB2A1O75556 95 aa12.91□□□□□ -0.34
USP28-208ENST00000540438 TENM4Q6N022 2769 aa12.91□□□□□ -0.34
USP28-208ENST00000540438 S100A7AQ86SG5 101 aa12.91□□□□□ -0.34
USP28-208ENST00000540438 OR4X2Q8NGF9 303 aa12.91□□□□□ -0.34
USP28-208ENST00000540438 BBC3Q96PG8 261 aaPredicted RBP12.91□□□□□ -0.34
USP28-208ENST00000540438 DKK2Q9UBU2 259 aa12.91□□□□□ -0.34
USP28-208ENST00000540438 K7EMI3 77 aa12.91□□□□□ -0.34
USP28-208ENST00000540438 COL5A1-AS1Q5SY13 56 aa12.91□□□□□ -0.34
USP28-208ENST00000540438 KRTAP10-9P60411 292 aa12.9□□□□□ -0.34
USP28-208ENST00000540438 ANKRD39Q53RE8 183 aa12.9□□□□□ -0.34
USP28-208ENST00000540438 HELZ2Q9BYK8 2649 aaKnown RBP12.9□□□□□ -0.34
USP28-208ENST00000540438 TGFAP01135 160 aa12.9□□□□□ -0.34
USP28-208ENST00000540438 BMI1P35226 326 aa12.9□□□□□ -0.34
USP28-208ENST00000540438 ZNF48Q96MX3 618 aaPredicted RBP12.9□□□□□ -0.34
USP28-208ENST00000540438 AKAP9Q99996 3911 aa12.9□□□□□ -0.34
USP28-208ENST00000540438 TMEM191AQ9H0A3 160 aa12.9□□□□□ -0.34
USP28-208ENST00000540438 HSBP1L1C9JCN9 74 aa12.89□□□□□ -0.35
USP28-208ENST00000540438 RNASE4P34096 147 aaKnown RBP12.89□□□□□ -0.35
USP28-208ENST00000540438 SPANXN1Q5VSR9 72 aa12.89□□□□□ -0.35
USP28-208ENST00000540438 HIST2H2BCQ6DN03 193 aa12.89□□□□□ -0.35
USP28-208ENST00000540438 RNF185Q96GF1 192 aa12.89□□□□□ -0.35
USP28-208ENST00000540438 MSMBP08118 114 aa12.88□□□□□ -0.35
USP28-208ENST00000540438 C20orf202A1L168 122 aa12.88□□□□□ -0.35
USP28-208ENST00000540438 GNRH2O43555 120 aa12.88□□□□□ -0.35
USP28-208ENST00000540438 NEGR1Q7Z3B1 354 aa12.88□□□□□ -0.35
USP28-208ENST00000540438 GPHB5Q86YW7 130 aa12.88□□□□□ -0.35
USP28-208ENST00000540438 GOLT1BQ9Y3E0 138 aa12.88□□□□□ -0.35
USP28-208ENST00000540438 HECTD1Q9ULT8 2610 aa12.88□□□□□ -0.35
USP28-208ENST00000540438 DLEU1O43261 78 aa12.88□□□□□ -0.35
USP28-208ENST00000540438 LEPP41159 167 aa12.88□□□□□ -0.35
USP28-208ENST00000540438 NMUP48645 174 aa12.88□□□□□ -0.35
USP28-208ENST00000540438 HSPB8Q9UJY1 196 aa12.88□□□□□ -0.35
USP28-208ENST00000540438 IGLC6P0CF74 106 aa12.87□□□□□ -0.35
USP28-208ENST00000540438 DEFB112Q30KQ8 113 aa12.87□□□□□ -0.35
USP28-208ENST00000540438 UBR5O95071 2799 aaPredicted RBP12.87□□□□□ -0.35
USP28-208ENST00000540438 TRBV7-1A0A0A6YYK4 115 aa12.87□□□□□ -0.35
USP28-208ENST00000540438 DUX3Q96PT4 197 aa12.87□□□□□ -0.35
USP28-208ENST00000540438 FBLL1A6NHQ2 334 aaKnown RBP12.86□□□□□ -0.35
USP28-208ENST00000540438 RNF223E7ERA6 249 aa12.86□□□□□ -0.35
USP28-208ENST00000540438 SFTPCP11686 197 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms