RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 RPUSD1Q9UJJ7 312 aaKnown RBP1.18□□□□□ -2.22
NUP54-208ENST00000508604 SERP1Q9Y6X1 66 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 VWA8A3KMH1 1905 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 LRP4O75096 1905 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 TET2Q6N021 2002 aaPredicted RBP1.18□□□□□ -2.22
NUP54-208ENST00000508604 AHNAKQ09666 5890 aaKnown RBP1.18□□□□□ -2.22
NUP54-208ENST00000508604 DUOX1Q9NRD9 1551 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 DEPDC5O75140 1603 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 LRP6O75581 1613 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 LOC285556D6RIA3 1793 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 SCN10AQ9Y5Y9 1956 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 DOCK6Q96HP0 2047 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 MED12LQ86YW9 2145 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 TRGV5A0A0B4J1U4 118 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 TRAV8-4A0A0B4J246 113 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 IGHV1-24A0A0C4DH33 117 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 IGHV1-58A0A0C4DH39 117 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 RBAKDNA6NC62 111 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 C2orf70A6NJV1 201 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 K7EMT4 169 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 LGALS9O00182 355 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 SDCBPO00560 298 aaPredicted RBP1.17□□□□□ -2.22
NUP54-208ENST00000508604 PDCD6O75340 191 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 IGKCP01834 107 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 HLA-DQA1P01909 254 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 APCSP02743 223 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 LGALS2P05162 132 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 HLA-DRB4P13762 266 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 CTLA4P16410 223 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 COL8A2P25067 703 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 CSN1S1P47710 185 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 INSL3P51460 131 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 SUB1P53999 127 aaKnown RBP eCLIP1.17□□□□□ -2.22
NUP54-208ENST00000508604 GFERP55789 205 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 SMIM11AP58511 58 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 DAD1P61803 113 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 NPC2P61916 151 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 RPS11P62280 158 aaKnown RBP eCLIP1.17□□□□□ -2.22
NUP54-208ENST00000508604 RPL23P62829 140 aaKnown RBP1.17□□□□□ -2.22
NUP54-208ENST00000508604 FKBP1AP62942 108 aaKnown RBP1.17□□□□□ -2.22
NUP54-208ENST00000508604 ELOCQ15369 112 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 DEFB116Q30KQ4 102 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 ZNF791Q3KP31 576 aaPredicted RBP1.17□□□□□ -2.22
NUP54-208ENST00000508604 NCBP2-AS2Q69YL0 99 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 NOXRED1Q6NXP6 359 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 DGAT2L6Q6ZPD8 337 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 ZNF493Q6ZR52 646 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 OR5AS1Q8N127 324 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 ZNF645Q8N7E2 425 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 LY6G5BQ8NDX9 201 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 FAM213BQ8TBF2 198 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 IGF2BP2-AS1Q96M15 143 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 SMIM7Q9BQ49 75 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 PRSS27Q9BQR3 290 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 TXNDC17Q9BRA2 123 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 PARP12Q9H0J9 701 aaKnown RBP1.17□□□□□ -2.22
NUP54-208ENST00000508604 DEFB127Q9H1M4 99 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 C16orf95Q9H693 158 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 OTORQ9NRC9 128 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 PCTPQ9UKL6 214 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 AMMECR1Q9Y4X0 333 aaPredicted RBP1.17□□□□□ -2.22
NUP54-208ENST00000508604 HES2Q9Y543 173 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 KCNE3Q9Y6H6 103 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 HLA-DRB4X5D2U9 266 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 NRXN3Q9Y4C0 1643 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 BCORQ6W2J9 1755 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 DLEC1Q9Y238 1755 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 NLRC5Q86WI3 1866 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 EXPH5Q8NEV8 1989 aa1.17□□□□□ -2.22
NUP54-208ENST00000508604 TRAV2A0A0B4J234 112 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 TRAV17A0A0B4J275 112 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 MDFIC2A0A1B0GVS7 189 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 PLAC8L1A1L4L8 177 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 GRIFINA4D1Z8 144 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 IGLL5B9A064 214 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 LINC01619G3V211 115 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 NDUFB3O43676 98 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 SYNGR2O43760 224 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 NDUFS5O43920 106 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 OR1I1O60431 355 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 CPSF4O95639 269 aaKnown RBP1.16□□□□□ -2.22
NUP54-208ENST00000508604 EPPINO95925 133 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 IGKV5-2P06315 115 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 CD7P09564 240 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 RBMY1CP0DJD4 496 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 CXCL8P10145 99 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 CCL1P22362 96 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 ATP5EP56381 51 aaPredicted RBP1.16□□□□□ -2.22
NUP54-208ENST00000508604 MTPNP58546 118 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 UBE2L3P68036 154 aaKnown RBP1.16□□□□□ -2.22
NUP54-208ENST00000508604 CCL8P80075 99 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 SERF2P84101 59 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 CST6Q15828 149 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 ZNF726P1Q15940 193 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 NSUN5P1Q3KNT7 163 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 ZNF678Q5SXM1 525 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 C1orf140Q5VVS0 124 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 LGALS9CQ6DKI2 356 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 RICTORQ6R327 1708 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 LINC00305Q7Z4B0 112 aa1.16□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms