RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 IGHV1-24A0A0C4DH33 117 aa6.39□□□□□ -1.39
CIITA-201ENST00000324288 CRYBA4P53673 196 aa6.39□□□□□ -1.39
CIITA-201ENST00000324288 FAM110DQ8TAY7 271 aaPredicted RBP6.39□□□□□ -1.39
CIITA-201ENST00000324288 LINC00473A8K010 186 aa6.39□□□□□ -1.39
CIITA-201ENST00000324288 PSPNO60542 156 aa6.39□□□□□ -1.39
CIITA-201ENST00000324288 C5orf64Q2M2E5 130 aa6.39□□□□□ -1.39
CIITA-201ENST00000324288 IGHV2-70P01814 119 aa6.39□□□□□ -1.39
CIITA-201ENST00000324288 Q0VG73 95 aa6.39□□□□□ -1.39
CIITA-201ENST00000324288 WIPF2Q8TF74 440 aaPredicted RBP6.39□□□□□ -1.39
CIITA-201ENST00000324288 LHBP01229 141 aa6.39□□□□□ -1.39
CIITA-201ENST00000324288 DTX1Q86Y01 620 aa6.39□□□□□ -1.39
CIITA-201ENST00000324288 PCP2Q8IVA1 136 aa6.39□□□□□ -1.39
CIITA-201ENST00000324288 CSRP3P50461 194 aa6.39□□□□□ -1.39
CIITA-201ENST00000324288 CFHR1Q03591 330 aa6.39□□□□□ -1.39
CIITA-201ENST00000324288 SPINK13Q1W4C9 94 aa6.39□□□□□ -1.39
CIITA-201ENST00000324288 TMEM178BH3BS89 294 aa6.38□□□□□ -1.39
CIITA-201ENST00000324288 INAFM2P0DMQ5 153 aa6.38□□□□□ -1.39
CIITA-201ENST00000324288 RNASE2P10153 161 aaKnown RBP6.38□□□□□ -1.39
CIITA-201ENST00000324288 CDKN1BP46527 198 aa6.38□□□□□ -1.39
CIITA-201ENST00000324288 SPRY2O43597 315 aa6.38□□□□□ -1.39
CIITA-201ENST00000324288 DKK2Q9UBU2 259 aa6.38□□□□□ -1.39
CIITA-201ENST00000324288 TMEM243Q9BU79 118 aa6.38□□□□□ -1.39
CIITA-201ENST00000324288 TRBV7-1A0A0A6YYK4 115 aa6.38□□□□□ -1.39
CIITA-201ENST00000324288 F8W1H4 67 aa6.38□□□□□ -1.39
CIITA-201ENST00000324288 LYPD2Q6UXB3 125 aa6.38□□□□□ -1.39
CIITA-201ENST00000324288 H0YJW9 148 aa6.38□□□□□ -1.39
CIITA-201ENST00000324288 IGHG4P01861 327 aa6.38□□□□□ -1.39
CIITA-201ENST00000324288 TNS1Q9HBL0 1735 aaKnown RBP6.38□□□□□ -1.39
CIITA-201ENST00000324288 C12orf74Q32Q52 190 aa6.38□□□□□ -1.39
CIITA-201ENST00000324288 UTF1Q5T230 341 aa6.38□□□□□ -1.39
CIITA-201ENST00000324288 A0A0U1RQV1 116 aa6.38□□□□□ -1.39
CIITA-201ENST00000324288 RNF223E7ERA6 249 aa6.38□□□□□ -1.39
CIITA-201ENST00000324288 LHFPL1Q86WI0 220 aa6.38□□□□□ -1.39
CIITA-201ENST00000324288 A0A1W2PPI3 338 aa6.38□□□□□ -1.39
CIITA-201ENST00000324288 EFNA2O43921 213 aa6.38□□□□□ -1.39
CIITA-201ENST00000324288 DEFB131AP59861 70 aa6.38□□□□□ -1.39
CIITA-201ENST00000324288 FAM166AQ6J272 317 aa6.38□□□□□ -1.39
CIITA-201ENST00000324288 PRO1854Q9UHT4 67 aa6.38□□□□□ -1.39
CIITA-201ENST00000324288 A0A0G2JNJ9 132 aa6.38□□□□□ -1.39
CIITA-201ENST00000324288 MMP23AO75900 390 aa6.38□□□□□ -1.39
CIITA-201ENST00000324288 RHPN1-AS1Q9BWJ2 59 aa6.38□□□□□ -1.39
CIITA-201ENST00000324288 UBL5Q9BZL1 73 aa6.38□□□□□ -1.39
CIITA-201ENST00000324288 Q9UFV3 132 aa6.38□□□□□ -1.39
CIITA-201ENST00000324288 ZNF561-AS1K7EIQ3 104 aa6.37□□□□□ -1.39
CIITA-201ENST00000324288 BAALC-AS2P0C853 105 aa6.37□□□□□ -1.39
CIITA-201ENST00000324288 COL8A2P25067 703 aa6.37□□□□□ -1.39
CIITA-201ENST00000324288 A0A0G2JRQ6 117 aa6.37□□□□□ -1.39
CIITA-201ENST00000324288 GAFA1Q96PS6 74 aa6.37□□□□□ -1.39
CIITA-201ENST00000324288 OR11H6Q8NGC7 330 aa6.37□□□□□ -1.39
CIITA-201ENST00000324288 RNASE8Q8TDE3 154 aaKnown RBP6.37□□□□□ -1.39
CIITA-201ENST00000324288 USP9YO00507 2555 aaPredicted RBP6.37□□□□□ -1.39
CIITA-201ENST00000324288 OVOL3O00110 214 aa6.37□□□□□ -1.39
CIITA-201ENST00000324288 IGHV4-28A0A0C4DH34 117 aa6.37□□□□□ -1.39
CIITA-201ENST00000324288 DSCR8Q96T75 97 aa6.37□□□□□ -1.39
CIITA-201ENST00000324288 A0A1B0GWJ7 208 aa6.37□□□□□ -1.39
CIITA-201ENST00000324288 NDUFS7O75251 213 aa6.37□□□□□ -1.39
CIITA-201ENST00000324288 IL18BPO95998 194 aa6.37□□□□□ -1.39
CIITA-201ENST00000324288 SPATA25Q9BR10 227 aa6.37□□□□□ -1.39
CIITA-201ENST00000324288 IFI6P09912 130 aa6.37□□□□□ -1.39
CIITA-201ENST00000324288 MRPL35Q9NZE8 188 aaKnown RBP6.37□□□□□ -1.39
CIITA-201ENST00000324288 NDUFA12Q9UI09 145 aa6.37□□□□□ -1.39
CIITA-201ENST00000324288 LY96Q9Y6Y9 160 aa6.37□□□□□ -1.39
CIITA-201ENST00000324288 IGHV2-5P01817 119 aa6.36□□□□□ -1.39
CIITA-201ENST00000324288 LINC00173Q6ZV60 143 aa6.36□□□□□ -1.39
CIITA-201ENST00000324288 GGNQ86UU5 652 aa6.36□□□□□ -1.39
CIITA-201ENST00000324288 BUB1B-PAK6H3BSN5 160 aa6.36□□□□□ -1.39
CIITA-201ENST00000324288 WFDC2Q14508 124 aa6.36□□□□□ -1.39
CIITA-201ENST00000324288 VWCEQ96DN2 955 aa6.36□□□□□ -1.39
CIITA-201ENST00000324288 PAX9P55771 341 aa6.36□□□□□ -1.39
CIITA-201ENST00000324288 MBD3L4A6NDZ8 208 aaPredicted RBP6.36□□□□□ -1.39
CIITA-201ENST00000324288 MBD3L3A6NE82 208 aaPredicted RBP6.36□□□□□ -1.39
CIITA-201ENST00000324288 MBD3L5A6NJ08 208 aaPredicted RBP6.36□□□□□ -1.39
CIITA-201ENST00000324288 EGR2P11161 476 aaPredicted RBP6.36□□□□□ -1.39
CIITA-201ENST00000324288 MBD3L2Q8NHZ7 208 aaPredicted RBP6.36□□□□□ -1.39
CIITA-201ENST00000324288 PRSS29PA6NIE9 313 aa6.36□□□□□ -1.39
CIITA-201ENST00000324288 Q8N8P6 123 aa6.36□□□□□ -1.39
CIITA-201ENST00000324288 KIAA1549LQ6ZVL6 1849 aa6.36□□□□□ -1.39
CIITA-201ENST00000324288 SAA4P35542 130 aa6.36□□□□□ -1.39
CIITA-201ENST00000324288 PRR30Q53SZ7 412 aaPredicted RBP6.36□□□□□ -1.39
CIITA-201ENST00000324288 MRPL14Q6P1L8 145 aaKnown RBP6.36□□□□□ -1.39
CIITA-201ENST00000324288 LYL1P12980 280 aa6.36□□□□□ -1.39
CIITA-201ENST00000324288 HS3ST6Q96QI5 342 aa6.36□□□□□ -1.39
CIITA-201ENST00000324288 M0R1W7 72 aa6.35□□□□□ -1.39
CIITA-201ENST00000324288 IGF2RP11717 2491 aa6.35□□□□□ -1.39
CIITA-201ENST00000324288 IGKV1-16P04430 117 aa6.35□□□□□ -1.39
CIITA-201ENST00000324288 ZNF883P0CG24 379 aa6.35□□□□□ -1.39
CIITA-201ENST00000324288 ZNF492Q9P255 531 aa6.35□□□□□ -1.39
CIITA-201ENST00000324288 SIGLEC9Q9Y336 463 aa6.35□□□□□ -1.39
CIITA-201ENST00000324288 C20orf204Q6ZNR8 217 aa6.35□□□□□ -1.39
CIITA-201ENST00000324288 PRSS47A8MTI9 375 aa6.35□□□□□ -1.39
CIITA-201ENST00000324288 B4DSR2 109 aa6.35□□□□□ -1.39
CIITA-201ENST00000324288 IGFBPL1Q8WX77 278 aa6.35□□□□□ -1.39
CIITA-201ENST00000324288 TANC1Q9C0D5 1861 aa6.35□□□□□ -1.39
CIITA-201ENST00000324288 FAM104BQ5XKR9 115 aa6.35□□□□□ -1.39
CIITA-201ENST00000324288 BPESC1Q9GZL8 116 aa6.35□□□□□ -1.39
CIITA-201ENST00000324288 ZSWIM8A7E2V4 1837 aa6.35□□□□□ -1.39
CIITA-201ENST00000324288 ARTNQ5T4W7 220 aa6.35□□□□□ -1.39
CIITA-201ENST00000324288 Q8NFD4 153 aa6.35□□□□□ -1.39
CIITA-201ENST00000324288 PNRC2Q9NPJ4 139 aaKnown RBP6.35□□□□□ -1.39
CIITA-201ENST00000324288 E9PLN8 166 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms