RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 ADAMTSL5Q6ZMM2 481 aa8.21□□□□□ -1.1
USP28-201ENST00000003302 ORMDL3Q8N138 153 aa8.21□□□□□ -1.1
USP28-201ENST00000003302 Q8N6K4 173 aa8.21□□□□□ -1.1
USP28-201ENST00000003302 FER1L6-AS1Q8NA97 138 aa8.21□□□□□ -1.1
USP28-201ENST00000003302 OR2K2Q8NGT1 345 aa8.21□□□□□ -1.1
USP28-201ENST00000003302 HHLA3Q9XRX5 114 aa8.21□□□□□ -1.1
USP28-201ENST00000003302 CT45A10P0DMU9 189 aa8.21□□□□□ -1.1
USP28-201ENST00000003302 FXYD2P54710 66 aa8.21□□□□□ -1.1
USP28-201ENST00000003302 MFAP4P55083 255 aa8.21□□□□□ -1.1
USP28-201ENST00000003302 C11orf71Q6IPW1 123 aa8.21□□□□□ -1.1
USP28-201ENST00000003302 AGPAT4-IT1Q9H0P7 198 aa8.21□□□□□ -1.1
USP28-201ENST00000003302 U3KQK5 164 aa8.21□□□□□ -1.1
USP28-201ENST00000003302 NACAE9PAV3 2078 aa8.2□□□□□ -1.1
USP28-201ENST00000003302 UNQ9165/PRO28630Q6UXU0 137 aa8.2□□□□□ -1.1
USP28-201ENST00000003302 BRD3OSQ6XYD6 125 aa8.2□□□□□ -1.1
USP28-201ENST00000003302 C20orf173Q96LM9 149 aa8.2□□□□□ -1.1
USP28-201ENST00000003302 AAMDCQ9H7C9 122 aa8.2□□□□□ -1.1
USP28-201ENST00000003302 HSPB8Q9UJY1 196 aa8.2□□□□□ -1.1
USP28-201ENST00000003302 ZNF462Q96JM2 2506 aa8.2□□□□□ -1.1
USP28-201ENST00000003302 BUB3O43684 328 aa8.2□□□□□ -1.1
USP28-201ENST00000003302 PRTN3P24158 256 aa8.2□□□□□ -1.1
USP28-201ENST00000003302 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.2□□□□□ -1.1
USP28-201ENST00000003302 GTSCR1Q86UQ5 136 aa8.2□□□□□ -1.1
USP28-201ENST00000003302 MAPKAPK5-AS1Q8N8E1 139 aa8.2□□□□□ -1.1
USP28-201ENST00000003302 SPOCK3Q9BQ16 436 aa8.2□□□□□ -1.1
USP28-201ENST00000003302 KLK15Q9H2R5 256 aa8.2□□□□□ -1.1
USP28-201ENST00000003302 DOPEY1Q5JWR5 2465 aa8.2□□□□□ -1.1
USP28-201ENST00000003302 RIPPLY3P57055 190 aa8.2□□□□□ -1.1
USP28-201ENST00000003302 LY6DQ14210 128 aa8.2□□□□□ -1.1
USP28-201ENST00000003302 TMEM97Q5BJF2 176 aa8.2□□□□□ -1.1
USP28-201ENST00000003302 DTX2Q86UW9 622 aa8.2□□□□□ -1.1
USP28-201ENST00000003302 IFI27L1Q96BM0 104 aa8.2□□□□□ -1.1
USP28-201ENST00000003302 C19orf84I3L1E1 186 aa8.19□□□□□ -1.1
USP28-201ENST00000003302 SAA4P35542 130 aa8.19□□□□□ -1.1
USP28-201ENST00000003302 GLMPQ8WWB7 406 aa8.19□□□□□ -1.1
USP28-201ENST00000003302 HSBP1L1C9JCN9 74 aa8.19□□□□□ -1.1
USP28-201ENST00000003302 HIST1H1AQ02539 215 aaPredicted RBP8.19□□□□□ -1.1
USP28-201ENST00000003302 GATD1Q8NB37 220 aa8.19□□□□□ -1.1
USP28-201ENST00000003302 SETXQ7Z333 2677 aaKnown RBP8.19□□□□□ -1.1
USP28-201ENST00000003302 NBEAL2Q6ZNJ1 2754 aa8.19□□□□□ -1.1
USP28-201ENST00000003302 FBLL1A6NHQ2 334 aaKnown RBP8.19□□□□□ -1.1
USP28-201ENST00000003302 SRD5A1P18405 259 aa8.19□□□□□ -1.1
USP28-201ENST00000003302 LEPP41159 167 aa8.19□□□□□ -1.1
USP28-201ENST00000003302 OCIAD2Q56VL3 154 aa8.19□□□□□ -1.1
USP28-201ENST00000003302 ZC2HC1BQ5TFG8 222 aa8.19□□□□□ -1.1
USP28-201ENST00000003302 HIST2H2BDQ6DRA6 164 aa8.19□□□□□ -1.1
USP28-201ENST00000003302 TTC9CQ8N5M4 171 aa8.19□□□□□ -1.1
USP28-201ENST00000003302 TRAV30A0A087WSZ9 112 aa8.18□□□□□ -1.1
USP28-201ENST00000003302 NEGR1Q7Z3B1 354 aa8.18□□□□□ -1.1
USP28-201ENST00000003302 BOD1L2Q8IYS8 172 aa8.18□□□□□ -1.1
USP28-201ENST00000003302 CSN1S1P47710 185 aa8.18□□□□□ -1.1
USP28-201ENST00000003302 BPESC1Q9GZL8 116 aa8.18□□□□□ -1.1
USP28-201ENST00000003302 IGHV7-4-1A0A0J9YVY3 117 aa8.18□□□□□ -1.1
USP28-201ENST00000003302 SMAD7O15105 426 aaKnown RBP8.18□□□□□ -1.1
USP28-201ENST00000003302 TNFRSF6BO95407 300 aa8.18□□□□□ -1.1
USP28-201ENST00000003302 TMEM158Q8WZ71 300 aa8.18□□□□□ -1.1
USP28-201ENST00000003302 GOSR1O95249 250 aa8.18□□□□□ -1.1
USP28-201ENST00000003302 ODF1Q14990 250 aa8.18□□□□□ -1.1
USP28-201ENST00000003302 HBDP02042 147 aa8.17□□□□□ -1.1
USP28-201ENST00000003302 VSTM5A8MXK1 200 aa8.17□□□□□ -1.1
USP28-201ENST00000003302 GPHB5Q86YW7 130 aa8.17□□□□□ -1.1
USP28-201ENST00000003302 TRBV6-1A0A0K0K1D8 114 aa8.17□□□□□ -1.1
USP28-201ENST00000003302 ZNF502Q8TBZ5 544 aa8.17□□□□□ -1.1
USP28-201ENST00000003302 MTORP42345 2549 aa8.17□□□□□ -1.1
USP28-201ENST00000003302 TRAV40A0A0B4J280 105 aa8.17□□□□□ -1.1
USP28-201ENST00000003302 IGLV2-18A0A075B6J9 118 aa8.16□□□□□ -1.1
USP28-201ENST00000003302 IGHV3-11P01762 117 aa8.16□□□□□ -1.1
USP28-201ENST00000003302 LYPD1Q8N2G4 141 aa8.16□□□□□ -1.1
USP28-201ENST00000003302 SIRPDQ9H106 197 aa8.16□□□□□ -1.1
USP28-201ENST00000003302 UFC1Q9Y3C8 167 aa8.16□□□□□ -1.1
USP28-201ENST00000003302 PRRC2AP48634 2157 aaKnown RBP8.16□□□□□ -1.1
USP28-201ENST00000003302 K7EQM0 130 aa8.16□□□□□ -1.1
USP28-201ENST00000003302 CD5LO43866 347 aa8.16□□□□□ -1.1
USP28-201ENST00000003302 UFSP1Q6NVU6 142 aa8.16□□□□□ -1.1
USP28-201ENST00000003302 RPL39LQ96EH5 51 aaKnown RBP8.16□□□□□ -1.1
USP28-201ENST00000003302 CBY1Q9Y3M2 126 aa8.16□□□□□ -1.1
USP28-201ENST00000003302 APCP25054 2843 aa8.16□□□□□ -1.1
USP28-201ENST00000003302 ACANP16112 2415 aa8.16□□□□□ -1.1
USP28-201ENST00000003302 H3BVH4 76 aa8.16□□□□□ -1.1
USP28-201ENST00000003302 PPP1R14DQ9NXH3 145 aa8.16□□□□□ -1.1
USP28-201ENST00000003302 CDKN1BP46527 198 aa8.15□□□□□ -1.1
USP28-201ENST00000003302 C12orf54Q6X4T0 127 aa8.15□□□□□ -1.1
USP28-201ENST00000003302 FOXC2Q99958 501 aa8.15□□□□□ -1.1
USP28-201ENST00000003302 MRPL35Q9NZE8 188 aaKnown RBP8.15□□□□□ -1.1
USP28-201ENST00000003302 PRSS29PA6NIE9 313 aa8.15□□□□□ -1.1
USP28-201ENST00000003302 PDE6HQ13956 83 aa8.15□□□□□ -1.1
USP28-201ENST00000003302 JPT2Q9H910 190 aa8.15□□□□□ -1.1
USP28-201ENST00000003302 RPL7P18124 248 aaKnown RBP8.15□□□□□ -1.1
USP28-201ENST00000003302 EMP1P54849 157 aa8.15□□□□□ -1.1
USP28-201ENST00000003302 TMEM8BA6NDV4 472 aa8.15□□□□□ -1.11
USP28-201ENST00000003302 C10orf99Q6UWK7 81 aa8.15□□□□□ -1.11
USP28-201ENST00000003302 C8orf86Q6ZUL3 223 aa8.15□□□□□ -1.11
USP28-201ENST00000003302 NRACQ8N912 160 aa8.15□□□□□ -1.11
USP28-201ENST00000003302 TMEM160Q9NX00 188 aa8.15□□□□□ -1.11
USP28-201ENST00000003302 GCSHP23434 173 aa8.14□□□□□ -1.11
USP28-201ENST00000003302 LGALS9BQ3B8N2 356 aa8.14□□□□□ -1.11
USP28-201ENST00000003302 LGALS9CQ6DKI2 356 aa8.14□□□□□ -1.11
USP28-201ENST00000003302 MS4A6AQ9H2W1 248 aa8.14□□□□□ -1.11
USP28-201ENST00000003302 UBTD1Q9HAC8 227 aa8.14□□□□□ -1.11
USP28-201ENST00000003302 MEGF9Q9H1U4 602 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 114.2 ms