RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 LEPP41159 167 aa9.51□□□□□ -0.89
SHMT1-208ENST00000582352 NDPQ00604 133 aa9.51□□□□□ -0.89
SHMT1-208ENST00000582352 NXT2Q9NPJ8 142 aaKnown RBP9.51□□□□□ -0.89
SHMT1-208ENST00000582352 MSRB1Q9NZV6 116 aa9.51□□□□□ -0.89
SHMT1-208ENST00000582352 SPCS1Q9Y6A9 102 aa9.51□□□□□ -0.89
SHMT1-208ENST00000582352 A0A1W2PPM0 123 aa9.5□□□□□ -0.89
SHMT1-208ENST00000582352 HLA-DMBP28068 263 aa9.5□□□□□ -0.89
SHMT1-208ENST00000582352 TM4SF20Q53R12 229 aa9.5□□□□□ -0.89
SHMT1-208ENST00000582352 PSMG4Q5JS54 123 aa9.5□□□□□ -0.89
SHMT1-208ENST00000582352 TTC9CQ8N5M4 171 aa9.5□□□□□ -0.89
SHMT1-208ENST00000582352 OR5A1Q8NGJ0 315 aa9.5□□□□□ -0.89
SHMT1-208ENST00000582352 RNF185Q96GF1 192 aa9.5□□□□□ -0.89
SHMT1-208ENST00000582352 SRSF2Q01130 221 aaKnown RBP9.5□□□□□ -0.89
SHMT1-208ENST00000582352 CNFNQ9BYD5 112 aa9.5□□□□□ -0.89
SHMT1-208ENST00000582352 FABP5P3A8MUU1 101 aa9.49□□□□□ -0.89
SHMT1-208ENST00000582352 TNFRSF6BO95407 300 aa9.49□□□□□ -0.89
SHMT1-208ENST00000582352 FABP2P12104 132 aa9.49□□□□□ -0.89
SHMT1-208ENST00000582352 FCER1GP30273 86 aa9.49□□□□□ -0.89
SHMT1-208ENST00000582352 PRR30Q53SZ7 412 aaPredicted RBP9.49□□□□□ -0.89
SHMT1-208ENST00000582352 IGHV3OR16-8A0A075B7F1 116 aa9.49□□□□□ -0.89
SHMT1-208ENST00000582352 PRSS1P07477 247 aa9.49□□□□□ -0.89
SHMT1-208ENST00000582352 EVI2AP22794 236 aa9.49□□□□□ -0.89
SHMT1-208ENST00000582352 GCSHP23434 173 aa9.49□□□□□ -0.89
SHMT1-208ENST00000582352 ODF1Q14990 250 aa9.49□□□□□ -0.89
SHMT1-208ENST00000582352 SMAD5-AS1Q9Y6J3 95 aa9.49□□□□□ -0.89
SHMT1-208ENST00000582352 ODF3BA8MYP8 253 aa9.48□□□□□ -0.89
SHMT1-208ENST00000582352 IGHG4P01861 327 aa9.48□□□□□ -0.89
SHMT1-208ENST00000582352 CTSGP08311 255 aa9.48□□□□□ -0.89
SHMT1-208ENST00000582352 LINC01560Q8TB33 94 aa9.48□□□□□ -0.89
SHMT1-208ENST00000582352 PIFOQ8TCI5 191 aa9.48□□□□□ -0.89
SHMT1-208ENST00000582352 TIMD4Q96H15 378 aa9.48□□□□□ -0.89
SHMT1-208ENST00000582352 IGHV3-35A0A0C4DH35 117 aa9.48□□□□□ -0.89
SHMT1-208ENST00000582352 LINC01546A6NGU7 62 aa9.48□□□□□ -0.89
SHMT1-208ENST00000582352 SMIM13P0DJ93 91 aa9.48□□□□□ -0.89
SHMT1-208ENST00000582352 RIPPLY3P57055 190 aa9.48□□□□□ -0.89
SHMT1-208ENST00000582352 CCDC144NLQ6NUI1 221 aa9.48□□□□□ -0.89
SHMT1-208ENST00000582352 ARHGAP32A7KAX9 2087 aa9.48□□□□□ -0.89
SHMT1-208ENST00000582352 M0R1W7 72 aa9.47□□□□□ -0.89
SHMT1-208ENST00000582352 LY6HO94772 140 aa9.47□□□□□ -0.89
SHMT1-208ENST00000582352 GAS8-AS1O95177 125 aa9.47□□□□□ -0.89
SHMT1-208ENST00000582352 IGKCP01834 107 aa9.47□□□□□ -0.89
SHMT1-208ENST00000582352 LINC01559Q495D7 138 aa9.47□□□□□ -0.89
SHMT1-208ENST00000582352 DYNAPQ8N1N2 210 aa9.47□□□□□ -0.89
SHMT1-208ENST00000582352 IGKV2D-26A0A0A0MRZ7 120 aa9.47□□□□□ -0.89
SHMT1-208ENST00000582352 ERCC8Q13216 396 aa9.47□□□□□ -0.89
SHMT1-208ENST00000582352 SAMD5Q5TGI4 173 aa9.47□□□□□ -0.89
SHMT1-208ENST00000582352 FOXC2Q99958 501 aa9.47□□□□□ -0.89
SHMT1-208ENST00000582352 CHAC1Q9BUX1 264 aa9.47□□□□□ -0.89
SHMT1-208ENST00000582352 HIGD1BQ9P298 99 aa9.47□□□□□ -0.89
SHMT1-208ENST00000582352 ANKHD1Q8IWZ3 2542 aaKnown RBP9.47□□□□□ -0.89
SHMT1-208ENST00000582352 G3V4G9 280 aa9.46□□□□□ -0.89
SHMT1-208ENST00000582352 PRTN3P24158 256 aa9.46□□□□□ -0.89
SHMT1-208ENST00000582352 TMEM158Q8WZ71 300 aa9.46□□□□□ -0.89
SHMT1-208ENST00000582352 ZMAT4Q9H898 229 aa9.46□□□□□ -0.89
SHMT1-208ENST00000582352 ATP5LO75964 103 aa9.46□□□□□ -0.9
SHMT1-208ENST00000582352 DPM2O94777 84 aa9.46□□□□□ -0.9
SHMT1-208ENST00000582352 PPIFP30405 207 aaKnown RBP9.46□□□□□ -0.9
SHMT1-208ENST00000582352 ZNF575Q86XF7 245 aa9.46□□□□□ -0.9
SHMT1-208ENST00000582352 VKORC1Q9BQB6 163 aa9.46□□□□□ -0.9
SHMT1-208ENST00000582352 HHLA3Q9XRX5 114 aa9.46□□□□□ -0.9
SHMT1-208ENST00000582352 FAM90A27PA6NNH2 459 aa9.46□□□□□ -0.9
SHMT1-208ENST00000582352 TMEM11P17152 192 aa9.46□□□□□ -0.9
SHMT1-208ENST00000582352 FXYD2P54710 66 aa9.46□□□□□ -0.9
SHMT1-208ENST00000582352 IL17RELQ6ZVW7 336 aa9.46□□□□□ -0.9
SHMT1-208ENST00000582352 NEGR1Q7Z3B1 354 aa9.46□□□□□ -0.9
SHMT1-208ENST00000582352 RNF182Q8N6D2 247 aa9.46□□□□□ -0.9
SHMT1-208ENST00000582352 TTTY13Q9BZ97 58 aa9.46□□□□□ -0.9
SHMT1-208ENST00000582352 SMPXQ9UHP9 88 aa9.46□□□□□ -0.9
SHMT1-208ENST00000582352 ZNF292O60281 2723 aa9.45□□□□□ -0.9
SHMT1-208ENST00000582352 GATA1P15976 413 aaPredicted RBP9.45□□□□□ -0.9
SHMT1-208ENST00000582352 VMO1Q7Z5L0 202 aa9.45□□□□□ -0.9
SHMT1-208ENST00000582352 DTX2Q86UW9 622 aa9.45□□□□□ -0.9
SHMT1-208ENST00000582352 PRAC2D3DTV9 90 aa9.45□□□□□ -0.9
SHMT1-208ENST00000582352 RAB9AP51151 201 aa9.45□□□□□ -0.9
SHMT1-208ENST00000582352 ZC2HC1BQ5TFG8 222 aa9.45□□□□□ -0.9
SHMT1-208ENST00000582352 Q8N8P6 123 aa9.45□□□□□ -0.9
SHMT1-208ENST00000582352 ABCA4P78363 2273 aa9.44□□□□□ -0.9
SHMT1-208ENST00000582352 LRBAP50851 2863 aa9.44□□□□□ -0.9
SHMT1-208ENST00000582352 RBAKDNA6NC62 111 aa9.44□□□□□ -0.9
SHMT1-208ENST00000582352 GTSCR1Q86UQ5 136 aa9.44□□□□□ -0.9
SHMT1-208ENST00000582352 CSMD1Q96PZ7 3565 aa9.44□□□□□ -0.9
SHMT1-208ENST00000582352 TRBV25-1A0A075B6N4 114 aa9.44□□□□□ -0.9
SHMT1-208ENST00000582352 TMEM8BA6NDV4 472 aa9.44□□□□□ -0.9
SHMT1-208ENST00000582352 C15orf32Q32M92 178 aa9.44□□□□□ -0.9
SHMT1-208ENST00000582352 Q8N6K4 173 aa9.44□□□□□ -0.9
SHMT1-208ENST00000582352 SLC50A1Q9BRV3 221 aa9.44□□□□□ -0.9
SHMT1-208ENST00000582352 IGHV7-81A0A0B4J1V7 117 aa9.43□□□□□ -0.9
SHMT1-208ENST00000582352 OOSP1A8MZH6 123 aa9.43□□□□□ -0.9
SHMT1-208ENST00000582352 K7ERJ3 54 aa9.43□□□□□ -0.9
SHMT1-208ENST00000582352 GRNP28799 593 aaKnown RBP9.43□□□□□ -0.9
SHMT1-208ENST00000582352 PSMG3-AS1Q96PY0 264 aa9.43□□□□□ -0.9
SHMT1-208ENST00000582352 UFC1Q9Y3C8 167 aa9.43□□□□□ -0.9
SHMT1-208ENST00000582352 RIF1Q5UIP0 2472 aaKnown RBP9.43□□□□□ -0.9
SHMT1-208ENST00000582352 WNK2Q9Y3S1 2297 aa9.43□□□□□ -0.9
SHMT1-208ENST00000582352 TRGV3P03979 118 aa9.43□□□□□ -0.9
SHMT1-208ENST00000582352 SMIM17P0DL12 118 aa9.43□□□□□ -0.9
SHMT1-208ENST00000582352 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.43□□□□□ -0.9
SHMT1-208ENST00000582352 TMEM160Q9NX00 188 aa9.43□□□□□ -0.9
SHMT1-208ENST00000582352 NHP2Q9NX24 153 aaKnown RBP9.43□□□□□ -0.9
SHMT1-208ENST00000582352 DCHS2Q6V1P9 2916 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms