RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 PPYP01298 95 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 ARL14EPLP0DKL9 152 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 CRYGSP22914 178 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 NDUFA6P56556 154 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 MRPS36P82909 103 aaKnown RBP0.43□□□□□ -2.34
USP3-209ENST00000558925 AKAP14Q86UN6 197 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 ARL17AQ8IVW1 177 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 SREK1IP1Q8N9Q2 155 aaPredicted RBP0.43□□□□□ -2.34
USP3-209ENST00000558925 TMEM229BQ8NBD8 167 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 OR4B1Q8NGF8 309 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 OR9Q1Q8NGQ5 310 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 BRK1Q8WUW1 75 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 AMELYQ99218 206 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 LXNQ9BS40 222 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 GINS2Q9Y248 185 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 TNS3Q68CZ2 1445 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 MUC16Q8WXI7 14507 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 ANKRD30AQ9BXX3 1397 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 TENM1Q9UKZ4 2725 aa0.43□□□□□ -2.34
USP3-209ENST00000558925 MYH1P12882 1939 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 COL1A1P02452 1464 aaPredicted RBP0.42□□□□□ -2.34
USP3-209ENST00000558925 KDM6AO15550 1401 aaPredicted RBP0.42□□□□□ -2.34
USP3-209ENST00000558925 FAM135BQ49AJ0 1406 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 A0A096LPI6 279 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 A0A1B0GW64 132 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 JMJD7-PLA2G4BH0Y9G9 81 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 NCR3O14931 201 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 IGLV3-1P01715 115 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 TRACP01848 142 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 MT-ND4LP03901 98 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 CD14P08571 375 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 SLC25A4P12235 298 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 TPT1P13693 172 aaKnown RBP0.42□□□□□ -2.34
USP3-209ENST00000558925 SDC4P31431 198 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 EFNA4P52798 201 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 MAXP61244 160 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 OR8B8Q15620 311 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 NEDD8Q15843 81 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 Q5XG85 94 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 HAGHLQ6PII5 290 aaPredicted RBP0.42□□□□□ -2.34
USP3-209ENST00000558925 GLIPR1L1Q6UWM5 242 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 TOMM20LQ6UXN7 152 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 SBSPONQ8IVN8 264 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 Q8N6K4 173 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 C5orf17Q8NAS9 161 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 MORN4Q8NDC4 146 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 OR51A4Q8NGJ6 313 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 OR10AG1Q8NH19 301 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 ZNF431Q8TF32 576 aaPredicted RBP0.42□□□□□ -2.34
USP3-209ENST00000558925 CST11Q9H112 138 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 TNFSF18Q9UNG2 199 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 GPR98Q8WXG9 6306 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 ZDBF2Q9HCK1 2354 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 DLC1Q96QB1 1528 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 NISCHQ9Y2I1 1504 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 CNTRLQ7Z7A1 2325 aa0.42□□□□□ -2.34
USP3-209ENST00000558925 NCAPD3P42695 1498 aa0.41□□□□□ -2.34
USP3-209ENST00000558925 LAMA4Q16363 1823 aa0.41□□□□□ -2.34
USP3-209ENST00000558925 PIK3C2AO00443 1686 aa0.41□□□□□ -2.34
USP3-209ENST00000558925 TRBV7-6A0A0J9YX20 115 aa0.41□□□□□ -2.34
USP3-209ENST00000558925 FAM107AO95990 144 aa0.41□□□□□ -2.34
USP3-209ENST00000558925 HBDP02042 147 aa0.41□□□□□ -2.34
USP3-209ENST00000558925 SLC25A5P05141 298 aaKnown RBP0.41□□□□□ -2.34
USP3-209ENST00000558925 RPL22P35268 128 aaKnown RBP0.41□□□□□ -2.34
USP3-209ENST00000558925 FXYD4P59646 89 aa0.41□□□□□ -2.34
USP3-209ENST00000558925 BLCAPP62952 87 aa0.41□□□□□ -2.34
USP3-209ENST00000558925 PRB3Q04118 309 aaPredicted RBP0.41□□□□□ -2.34
USP3-209ENST00000558925 TMEM244Q5VVB8 128 aa0.41□□□□□ -2.34
USP3-209ENST00000558925 KRTAP5-10Q6L8G5 202 aa0.41□□□□□ -2.34
USP3-209ENST00000558925 CSAG1Q6PB30 78 aa0.41□□□□□ -2.34
USP3-209ENST00000558925 OR5AK2Q8NH90 309 aa0.41□□□□□ -2.34
USP3-209ENST00000558925 NAT14Q8WUY8 206 aa0.41□□□□□ -2.34
USP3-209ENST00000558925 SKA2Q8WVK7 121 aaPredicted RBP0.41□□□□□ -2.34
USP3-209ENST00000558925 MCEEQ96PE7 176 aa0.41□□□□□ -2.34
USP3-209ENST00000558925 HSPB11Q9Y547 144 aa0.41□□□□□ -2.34
USP3-209ENST00000558925 SETXQ7Z333 2677 aaKnown RBP0.41□□□□□ -2.34
USP3-209ENST00000558925 ANK1P16157 1881 aa0.41□□□□□ -2.34
USP3-209ENST00000558925 UNC13AQ9UPW8 1703 aa0.41□□□□□ -2.34
USP3-209ENST00000558925 A2MP01023 1474 aa0.41□□□□□ -2.34
USP3-209ENST00000558925 TCOF1Q13428 1488 aaKnown RBP0.41□□□□□ -2.34
USP3-209ENST00000558925 USP9XQ93008 2570 aaPredicted RBP0.41□□□□□ -2.34
USP3-209ENST00000558925 HELZP42694 1942 aaKnown RBP0.4□□□□□ -2.34
USP3-209ENST00000558925 KIAA1107Q9UPP5 1409 aa0.4□□□□□ -2.34
USP3-209ENST00000558925 PTPN13Q12923 2485 aa0.4□□□□□ -2.35
USP3-209ENST00000558925 COL6A3P12111 3177 aa0.4□□□□□ -2.35
USP3-209ENST00000558925 KNTC1P50748 2209 aa0.4□□□□□ -2.35
USP3-209ENST00000558925 TRAV36DV7A0A075B6V5 113 aa0.4□□□□□ -2.35
USP3-209ENST00000558925 IGLV3-32A0A0A0MS00 114 aa0.4□□□□□ -2.35
USP3-209ENST00000558925 TRAV16A0A0A6YYK6 109 aaPredicted RBP0.4□□□□□ -2.35
USP3-209ENST00000558925 LOC105371267A0A1B0GV96 52 aa0.4□□□□□ -2.35
USP3-209ENST00000558925 J3KT08 172 aa0.4□□□□□ -2.35
USP3-209ENST00000558925 CDC42EP2O14613 210 aa0.4□□□□□ -2.35
USP3-209ENST00000558925 DEGS1O15121 323 aa0.4□□□□□ -2.35
USP3-209ENST00000558925 TNFSF15O95150 251 aa0.4□□□□□ -2.35
USP3-209ENST00000558925 IGHV3-33P01772 117 aa0.4□□□□□ -2.35
USP3-209ENST00000558925 TCRAP04437 139 aa0.4□□□□□ -2.35
USP3-209ENST00000558925 CMPK1P30085 196 aa0.4□□□□□ -2.35
USP3-209ENST00000558925 RPS28P62857 69 aaKnown RBP0.4□□□□□ -2.35
USP3-209ENST00000558925 DEFB115Q30KQ5 88 aa0.4□□□□□ -2.35
USP3-209ENST00000558925 OCIAD2Q56VL3 154 aa0.4□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms