RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 NCAPD3P42695 1498 aa0.2□□□□□ -2.38
SCN1A-206ENST00000491429 CAMSAP2Q08AD1 1489 aa0.2□□□□□ -2.38
SCN1A-206ENST00000491429 CHD8Q9HCK8 2581 aa0.2□□□□□ -2.38
SCN1A-206ENST00000491429 FREM3P0C091 2139 aa0.2□□□□□ -2.38
SCN1A-206ENST00000491429 TRANK1O15050 2925 aa0.2□□□□□ -2.38
SCN1A-206ENST00000491429 RIF1Q5UIP0 2472 aaKnown RBP0.2□□□□□ -2.38
SCN1A-206ENST00000491429 FRMPD1Q5SYB0 1578 aa0.19□□□□□ -2.38
SCN1A-206ENST00000491429 PDZD2O15018 2839 aa0.19□□□□□ -2.38
SCN1A-206ENST00000491429 NAV3Q8IVL0 2385 aa0.19□□□□□ -2.38
SCN1A-206ENST00000491429 FRAS1Q86XX4 4008 aa0.19□□□□□ -2.38
SCN1A-206ENST00000491429 DOPEY1Q5JWR5 2465 aa0.19□□□□□ -2.38
SCN1A-206ENST00000491429 POU6F1Q14863 301 aa0.19□□□□□ -2.38
SCN1A-206ENST00000491429 TMED4Q7Z7H5 227 aa0.19□□□□□ -2.38
SCN1A-206ENST00000491429 LINC00269Q8N2A0 174 aa0.19□□□□□ -2.38
SCN1A-206ENST00000491429 AP3S1Q92572 193 aa0.19□□□□□ -2.38
SCN1A-206ENST00000491429 BORCS8Q96FH0 119 aa0.19□□□□□ -2.38
SCN1A-206ENST00000491429 CARD19Q96LW7 228 aa0.19□□□□□ -2.38
SCN1A-206ENST00000491429 OR4C12Q96R67 309 aa0.19□□□□□ -2.38
SCN1A-206ENST00000491429 EFCAB11Q9BUY7 163 aa0.19□□□□□ -2.38
SCN1A-206ENST00000491429 OTORQ9NRC9 128 aa0.19□□□□□ -2.38
SCN1A-206ENST00000491429 MED11Q9P086 117 aa0.19□□□□□ -2.38
SCN1A-206ENST00000491429 MYO18BQ8IUG5 2567 aa0.19□□□□□ -2.38
SCN1A-206ENST00000491429 EPG5Q9HCE0 2579 aa0.19□□□□□ -2.38
SCN1A-206ENST00000491429 TRPM1Q7Z4N2 1603 aa0.18□□□□□ -2.38
SCN1A-206ENST00000491429 A0A0J9YY99 117 aa0.18□□□□□ -2.38
SCN1A-206ENST00000491429 H3BQV1 296 aa0.18□□□□□ -2.38
SCN1A-206ENST00000491429 FABP4P15090 132 aa0.18□□□□□ -2.38
SCN1A-206ENST00000491429 PDE6GP18545 87 aa0.18□□□□□ -2.38
SCN1A-206ENST00000491429 QRFPP83859 136 aa0.18□□□□□ -2.38
SCN1A-206ENST00000491429 ANGPTL5Q86XS5 388 aa0.18□□□□□ -2.38
SCN1A-206ENST00000491429 DYDC1Q8WWB3 177 aa0.18□□□□□ -2.38
SCN1A-206ENST00000491429 TAF9BQ9HBM6 251 aa0.18□□□□□ -2.38
SCN1A-206ENST00000491429 ASH1LQ9NR48 2969 aaKnown RBP0.18□□□□□ -2.38
SCN1A-206ENST00000491429 UFC1Q9Y3C8 167 aa0.18□□□□□ -2.38
SCN1A-206ENST00000491429 HERC2O95714 4834 aa0.18□□□□□ -2.38
SCN1A-206ENST00000491429 N4BP2Q86UW6 1770 aaPredicted RBP0.18□□□□□ -2.38
SCN1A-206ENST00000491429 MYLKQ15746 1914 aa0.18□□□□□ -2.38
SCN1A-206ENST00000491429 ITPR3Q14573 2671 aa0.18□□□□□ -2.38
SCN1A-206ENST00000491429 FANCMQ8IYD8 2048 aa0.18□□□□□ -2.38
SCN1A-206ENST00000491429 NISCHQ9Y2I1 1504 aa0.18□□□□□ -2.38
SCN1A-206ENST00000491429 C3orf85A0A1B0GTC6 90 aa0.17□□□□□ -2.38
SCN1A-206ENST00000491429 C5orf58C9J3I9 102 aa0.17□□□□□ -2.38
SCN1A-206ENST00000491429 KPNA4O00629 521 aaPredicted RBP0.17□□□□□ -2.38
SCN1A-206ENST00000491429 FABP2P12104 132 aa0.17□□□□□ -2.38
SCN1A-206ENST00000491429 TCTAP57738 103 aa0.17□□□□□ -2.38
SCN1A-206ENST00000491429 MRPS36P82909 103 aaKnown RBP0.17□□□□□ -2.38
SCN1A-206ENST00000491429 NUP210LQ5VU65 1888 aa0.17□□□□□ -2.38
SCN1A-206ENST00000491429 C10orf111Q8N326 155 aa0.17□□□□□ -2.38
SCN1A-206ENST00000491429 STX19Q8N4C7 294 aa0.17□□□□□ -2.38
SCN1A-206ENST00000491429 FAM24BQ8N5W8 94 aa0.17□□□□□ -2.38
SCN1A-206ENST00000491429 PLEKHB2Q96CS7 222 aa0.17□□□□□ -2.38
SCN1A-206ENST00000491429 ZANQ9Y493 2812 aa0.17□□□□□ -2.38
SCN1A-206ENST00000491429 RTL9Q8NET4 1388 aa0.17□□□□□ -2.38
SCN1A-206ENST00000491429 ACACBO00763 2458 aa0.16□□□□□ -2.38
SCN1A-206ENST00000491429 MEGF8Q7Z7M0 2845 aa0.16□□□□□ -2.38
SCN1A-206ENST00000491429 WDFY4Q6ZS81 3184 aa0.16□□□□□ -2.38
SCN1A-206ENST00000491429 SULT1C4O75897 302 aa0.16□□□□□ -2.38
SCN1A-206ENST00000491429 LY6G6CO95867 125 aa0.16□□□□□ -2.38
SCN1A-206ENST00000491429 C5orf17Q8NAS9 161 aa0.16□□□□□ -2.38
SCN1A-206ENST00000491429 OR4B1Q8NGF8 309 aa0.16□□□□□ -2.38
SCN1A-206ENST00000491429 OR5AK2Q8NH90 309 aa0.16□□□□□ -2.38
SCN1A-206ENST00000491429 GRPEL2Q8TAA5 225 aa0.16□□□□□ -2.38
SCN1A-206ENST00000491429 HOPXQ9BPY8 73 aaPredicted RBP0.16□□□□□ -2.38
SCN1A-206ENST00000491429 ZNF292O60281 2723 aa0.16□□□□□ -2.38
SCN1A-206ENST00000491429 POLQO75417 2590 aa0.16□□□□□ -2.38
SCN1A-206ENST00000491429 ANKRD11Q6UB99 2663 aaPredicted RBP0.16□□□□□ -2.38
SCN1A-206ENST00000491429 DNHD1Q96M86 4753 aa0.15□□□□□ -2.38
SCN1A-206ENST00000491429 HIVEP1P15822 2718 aa0.15□□□□□ -2.38
SCN1A-206ENST00000491429 EP300Q09472 2414 aaPredicted RBP0.15□□□□□ -2.39
SCN1A-206ENST00000491429 ZFYVE26Q68DK2 2539 aa0.15□□□□□ -2.39
SCN1A-206ENST00000491429 BDP1A6H8Y1 2624 aa0.15□□□□□ -2.39
SCN1A-206ENST00000491429 TRACP01848 142 aa0.15□□□□□ -2.39
SCN1A-206ENST00000491429 CAV3P56539 151 aa0.15□□□□□ -2.39
SCN1A-206ENST00000491429 LYG2Q86SG7 212 aa0.15□□□□□ -2.39
SCN1A-206ENST00000491429 PRR15Q8IV56 129 aa0.15□□□□□ -2.39
SCN1A-206ENST00000491429 CDC26Q8NHZ8 85 aa0.15□□□□□ -2.39
SCN1A-206ENST00000491429 AP1S3Q96PC3 154 aa0.15□□□□□ -2.39
SCN1A-206ENST00000491429 MCEEQ96PE7 176 aa0.15□□□□□ -2.39
SCN1A-206ENST00000491429 LPAR5Q9H1C0 372 aa0.15□□□□□ -2.39
SCN1A-206ENST00000491429 LRTM1Q9HBL6 345 aa0.15□□□□□ -2.39
SCN1A-206ENST00000491429 GID8Q9NWU2 228 aa0.15□□□□□ -2.39
SCN1A-206ENST00000491429 IL20Q9NYY1 176 aa0.15□□□□□ -2.39
SCN1A-206ENST00000491429 LAMTOR3Q9UHA4 124 aa0.15□□□□□ -2.39
SCN1A-206ENST00000491429 CELSR3Q9NYQ7 3312 aa0.15□□□□□ -2.39
SCN1A-206ENST00000491429 ACANP16112 2415 aa0.15□□□□□ -2.39
SCN1A-206ENST00000491429 MUC12Q9UKN1 5478 aa0.15□□□□□ -2.39
SCN1A-206ENST00000491429 USH2AO75445 5202 aa0.15□□□□□ -2.39
SCN1A-206ENST00000491429 CHD6Q8TD26 2715 aa0.15□□□□□ -2.39
SCN1A-206ENST00000491429 UBR2Q8IWV8 1755 aa0.14□□□□□ -2.39
SCN1A-206ENST00000491429 LOC107984156A0A0G2JMH3 177 aa0.14□□□□□ -2.39
SCN1A-206ENST00000491429 RPS3P23396 243 aaKnown RBP eCLIP0.14□□□□□ -2.39
SCN1A-206ENST00000491429 SNRPD3P62318 126 aaKnown RBP0.14□□□□□ -2.39
SCN1A-206ENST00000491429 ARL17AQ8IVW1 177 aa0.14□□□□□ -2.39
SCN1A-206ENST00000491429 OR5H6Q8NGV6 325 aa0.14□□□□□ -2.39
SCN1A-206ENST00000491429 CCL4L1Q8NHW4 92 aa0.14□□□□□ -2.39
SCN1A-206ENST00000491429 CLEC2BQ92478 149 aa0.14□□□□□ -2.39
SCN1A-206ENST00000491429 DIRC1Q969H9 104 aa0.14□□□□□ -2.39
SCN1A-206ENST00000491429 BIN3Q9NQY0 253 aa0.14□□□□□ -2.39
SCN1A-206ENST00000491429 NUBP2Q9Y5Y2 271 aa0.14□□□□□ -2.39
SCN1A-206ENST00000491429 BPTFQ12830 3046 aa0.14□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms