RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 PRRG2O14669 202 aa12.41□□□□□ -0.42
CKAP4-201ENST00000378026 RNF185Q96GF1 192 aa12.41□□□□□ -0.42
CKAP4-201ENST00000378026 PRR25Q96S07 402 aa12.41□□□□□ -0.42
CKAP4-201ENST00000378026 IGHV1-3A0A0C4DH29 117 aa12.41□□□□□ -0.42
CKAP4-201ENST00000378026 TMEM178BH3BS89 294 aa12.41□□□□□ -0.42
CKAP4-201ENST00000378026 GAGE13Q4V321 117 aa12.41□□□□□ -0.42
CKAP4-201ENST00000378026 A0A1B0GWB2 263 aa12.41□□□□□ -0.42
CKAP4-201ENST00000378026 CRYGBP07316 175 aa12.41□□□□□ -0.42
CKAP4-201ENST00000378026 MBD3L4A6NDZ8 208 aaPredicted RBP12.4□□□□□ -0.42
CKAP4-201ENST00000378026 MBD3L3A6NE82 208 aaPredicted RBP12.4□□□□□ -0.42
CKAP4-201ENST00000378026 MBD3L5A6NJ08 208 aaPredicted RBP12.4□□□□□ -0.42
CKAP4-201ENST00000378026 SCGB1A1P11684 91 aa12.4□□□□□ -0.42
CKAP4-201ENST00000378026 LYPD1Q8N2G4 141 aa12.4□□□□□ -0.42
CKAP4-201ENST00000378026 MBD3L2Q8NHZ7 208 aaPredicted RBP12.4□□□□□ -0.42
CKAP4-201ENST00000378026 TM2D2Q9BX73 214 aa12.4□□□□□ -0.42
CKAP4-201ENST00000378026 ZGRF1Q86YA3 2104 aa12.4□□□□□ -0.42
CKAP4-201ENST00000378026 MRPS12O15235 138 aaKnown RBP12.4□□□□□ -0.42
CKAP4-201ENST00000378026 C20orf78Q9BR46 151 aa12.4□□□□□ -0.42
CKAP4-201ENST00000378026 FAM215AQ9Y5M1 114 aa12.4□□□□□ -0.42
CKAP4-201ENST00000378026 CACNA1BQ00975 2339 aa12.39□□□□□ -0.43
CKAP4-201ENST00000378026 ADIPOQQ15848 244 aa12.39□□□□□ -0.43
CKAP4-201ENST00000378026 DEFB109BQ30KR1 87 aa12.39□□□□□ -0.43
CKAP4-201ENST00000378026 TRAV26-2A0A0B4J265 109 aa12.39□□□□□ -0.43
CKAP4-201ENST00000378026 TMEM155Q4W5P6 130 aa12.39□□□□□ -0.43
CKAP4-201ENST00000378026 ZMAT4Q9H898 229 aa12.39□□□□□ -0.43
CKAP4-201ENST00000378026 TRAV26-1A0A087WT03 109 aa12.39□□□□□ -0.43
CKAP4-201ENST00000378026 DLX6P56179 175 aa12.39□□□□□ -0.43
CKAP4-201ENST00000378026 ERCC8Q13216 396 aa12.39□□□□□ -0.43
CKAP4-201ENST00000378026 SMPXQ9UHP9 88 aa12.39□□□□□ -0.43
CKAP4-201ENST00000378026 TTC9CQ8N5M4 171 aa12.38□□□□□ -0.43
CKAP4-201ENST00000378026 RPEQ96AT9 228 aa12.38□□□□□ -0.43
CKAP4-201ENST00000378026 KLK15Q9H2R5 256 aa12.38□□□□□ -0.43
CKAP4-201ENST00000378026 SVEP1Q4LDE5 3571 aa12.38□□□□□ -0.43
CKAP4-201ENST00000378026 NDUFS8O00217 210 aa12.38□□□□□ -0.43
CKAP4-201ENST00000378026 EFNA4P52798 201 aa12.37□□□□□ -0.43
CKAP4-201ENST00000378026 SPATA25Q9BR10 227 aa12.37□□□□□ -0.43
CKAP4-201ENST00000378026 LYNX1G3V0Z9 82 aa12.36□□□□□ -0.43
CKAP4-201ENST00000378026 CDX4O14627 284 aaPredicted RBP12.36□□□□□ -0.43
CKAP4-201ENST00000378026 IGLC6P0CF74 106 aa12.36□□□□□ -0.43
CKAP4-201ENST00000378026 LYNX1P0DP58 116 aa12.36□□□□□ -0.43
CKAP4-201ENST00000378026 GFRALQ6UXV0 394 aa12.36□□□□□ -0.43
CKAP4-201ENST00000378026 NXT2Q9NPJ8 142 aaKnown RBP12.36□□□□□ -0.43
CKAP4-201ENST00000378026 CYSLTR1Q9Y271 337 aa12.36□□□□□ -0.43
CKAP4-201ENST00000378026 DTX2Q86UW9 622 aa12.36□□□□□ -0.43
CKAP4-201ENST00000378026 MYOZ3Q8TDC0 251 aa12.36□□□□□ -0.43
CKAP4-201ENST00000378026 SH3BGRL2Q9UJC5 107 aa12.36□□□□□ -0.43
CKAP4-201ENST00000378026 UFC1Q9Y3C8 167 aa12.36□□□□□ -0.43
CKAP4-201ENST00000378026 PIEZO2Q9H5I5 2752 aa12.36□□□□□ -0.43
CKAP4-201ENST00000378026 PRSS47A8MTI9 375 aa12.36□□□□□ -0.43
CKAP4-201ENST00000378026 APOMO95445 188 aa12.36□□□□□ -0.43
CKAP4-201ENST00000378026 SCGB2A2Q13296 93 aa12.36□□□□□ -0.43
CKAP4-201ENST00000378026 ZNF575Q86XF7 245 aa12.36□□□□□ -0.43
CKAP4-201ENST00000378026 BUB1B-PAK6H3BSN5 160 aa12.35□□□□□ -0.43
CKAP4-201ENST00000378026 CEACAM4O75871 244 aa12.35□□□□□ -0.43
CKAP4-201ENST00000378026 TRGV3P03979 118 aa12.35□□□□□ -0.43
CKAP4-201ENST00000378026 BSPH1Q075Z2 132 aa12.35□□□□□ -0.43
CKAP4-201ENST00000378026 PIFOQ8TCI5 191 aa12.35□□□□□ -0.43
CKAP4-201ENST00000378026 ATP5LO75964 103 aa12.35□□□□□ -0.43
CKAP4-201ENST00000378026 ZNF883P0CG24 379 aa12.35□□□□□ -0.43
CKAP4-201ENST00000378026 ARHGAP32A7KAX9 2087 aa12.35□□□□□ -0.43
CKAP4-201ENST00000378026 CACNA1HO95180 2353 aa12.35□□□□□ -0.43
CKAP4-201ENST00000378026 RRN3P1Q2M238 152 aa12.34□□□□□ -0.43
CKAP4-201ENST00000378026 C8orf31Q8N9H6 132 aa12.34□□□□□ -0.43
CKAP4-201ENST00000378026 CRYBA4P53673 196 aa12.34□□□□□ -0.43
CKAP4-201ENST00000378026 SYT8Q8NBV8 401 aa12.34□□□□□ -0.43
CKAP4-201ENST00000378026 DYNLRB1Q9NP97 96 aa12.34□□□□□ -0.43
CKAP4-201ENST00000378026 NCBP2LA6PVI3 153 aaKnown RBP12.33□□□□□ -0.44
CKAP4-201ENST00000378026 HES1Q14469 280 aa12.33□□□□□ -0.44
CKAP4-201ENST00000378026 GEMIN7Q9H840 131 aaKnown RBP12.33□□□□□ -0.44
CKAP4-201ENST00000378026 PRAC2D3DTV9 90 aa12.33□□□□□ -0.44
CKAP4-201ENST00000378026 TIMM23O14925 209 aa12.33□□□□□ -0.44
CKAP4-201ENST00000378026 IGLV1-47P01700 117 aa12.33□□□□□ -0.44
CKAP4-201ENST00000378026 PDE6HQ13956 83 aa12.33□□□□□ -0.44
CKAP4-201ENST00000378026 IGHV3OR16-13A0A075B7E8 117 aa12.32□□□□□ -0.44
CKAP4-201ENST00000378026 IGHV3-74A0A0B4J1X5 117 aa12.32□□□□□ -0.44
CKAP4-201ENST00000378026 IGHV3-66A0A0C4DH42 116 aa12.32□□□□□ -0.44
CKAP4-201ENST00000378026 SHISA9B4DS77 424 aa12.32□□□□□ -0.44
CKAP4-201ENST00000378026 RNF182Q8N6D2 247 aa12.32□□□□□ -0.44
CKAP4-201ENST00000378026 ZNF418Q8TF45 676 aaPredicted RBP12.32□□□□□ -0.44
CKAP4-201ENST00000378026 GLMPQ8WWB7 406 aa12.32□□□□□ -0.44
CKAP4-201ENST00000378026 PGPEP1Q9NXJ5 209 aa12.32□□□□□ -0.44
CKAP4-201ENST00000378026 PRO0461Q9UI25 63 aa12.32□□□□□ -0.44
CKAP4-201ENST00000378026 LOC107984156A0A0G2JMH3 177 aa12.32□□□□□ -0.44
CKAP4-201ENST00000378026 FABP5P3A8MUU1 101 aa12.32□□□□□ -0.44
CKAP4-201ENST00000378026 ARL17AQ8IVW1 177 aa12.32□□□□□ -0.44
CKAP4-201ENST00000378026 DYNAPQ8N1N2 210 aa12.32□□□□□ -0.44
CKAP4-201ENST00000378026 Q8N8P6 123 aa12.32□□□□□ -0.44
CKAP4-201ENST00000378026 PTH2Q96A98 100 aa12.32□□□□□ -0.44
CKAP4-201ENST00000378026 BDP1A6H8Y1 2624 aa12.32□□□□□ -0.44
CKAP4-201ENST00000378026 MED13LQ71F56 2210 aa12.31□□□□□ -0.44
CKAP4-201ENST00000378026 IL17RELQ6ZVW7 336 aa12.31□□□□□ -0.44
CKAP4-201ENST00000378026 CFHR4Q92496 578 aa12.31□□□□□ -0.44
CKAP4-201ENST00000378026 MRPL16Q9NX20 251 aaKnown RBP12.31□□□□□ -0.44
CKAP4-201ENST00000378026 SPRY2O43597 315 aa12.31□□□□□ -0.44
CKAP4-201ENST00000378026 ASCL5Q7RTU5 278 aa12.31□□□□□ -0.44
CKAP4-201ENST00000378026 NUP37Q8NFH4 326 aa12.31□□□□□ -0.44
CKAP4-201ENST00000378026 ZNF502Q8TBZ5 544 aa12.31□□□□□ -0.44
CKAP4-201ENST00000378026 LRBAP50851 2863 aa12.3□□□□□ -0.44
CKAP4-201ENST00000378026 TNFRSF13BO14836 293 aaPredicted RBP12.3□□□□□ -0.44
CKAP4-201ENST00000378026 TGFAP01135 160 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms