RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 FER1L6-AS2Q96M78 137 aa10.58□□□□□ -0.72
SKA3-201ENST00000298260 MRPL16Q9NX20 251 aaKnown RBP10.58□□□□□ -0.72
SKA3-201ENST00000298260 RNF7Q9UBF6 113 aa10.58□□□□□ -0.72
SKA3-201ENST00000298260 COL12A1Q99715 3063 aa10.58□□□□□ -0.72
SKA3-201ENST00000298260 NGBQ9NPG2 151 aa10.57□□□□□ -0.72
SKA3-201ENST00000298260 CYSLTR1Q9Y271 337 aa10.57□□□□□ -0.72
SKA3-201ENST00000298260 LINC00312Q9Y6C7 94 aa10.57□□□□□ -0.72
SKA3-201ENST00000298260 TLN1Q9Y490 2541 aaKnown RBP10.57□□□□□ -0.72
SKA3-201ENST00000298260 FOXI1Q12951 378 aa10.57□□□□□ -0.72
SKA3-201ENST00000298260 HIGD1BQ9P298 99 aa10.57□□□□□ -0.72
SKA3-201ENST00000298260 COL27A1Q8IZC6 1860 aaPredicted RBP10.57□□□□□ -0.72
SKA3-201ENST00000298260 TRAV26-2A0A0B4J265 109 aa10.57□□□□□ -0.72
SKA3-201ENST00000298260 ZNF883P0CG24 379 aa10.57□□□□□ -0.72
SKA3-201ENST00000298260 TNFAIP6P98066 277 aaPredicted RBP10.57□□□□□ -0.72
SKA3-201ENST00000298260 KLF17Q5JT82 389 aaPredicted RBP10.57□□□□□ -0.72
SKA3-201ENST00000298260 ZFP2Q6ZN57 461 aa10.57□□□□□ -0.72
SKA3-201ENST00000298260 GATD1Q8NB37 220 aa10.57□□□□□ -0.72
SKA3-201ENST00000298260 IGLV1-44P01699 117 aa10.56□□□□□ -0.72
SKA3-201ENST00000298260 HLA-DMBP28068 263 aa10.56□□□□□ -0.72
SKA3-201ENST00000298260 EFNA4P52798 201 aa10.56□□□□□ -0.72
SKA3-201ENST00000298260 RRN3P1Q2M238 152 aa10.56□□□□□ -0.72
SKA3-201ENST00000298260 C22orf34Q6ZV56 151 aa10.56□□□□□ -0.72
SKA3-201ENST00000298260 IGKV1-17P01599 117 aa10.56□□□□□ -0.72
SKA3-201ENST00000298260 TMEM200BQ69YZ2 307 aa10.56□□□□□ -0.72
SKA3-201ENST00000298260 KLK15Q9H2R5 256 aa10.56□□□□□ -0.72
SKA3-201ENST00000298260 ZMAT4Q9H898 229 aa10.56□□□□□ -0.72
SKA3-201ENST00000298260 RPL27AP46776 148 aaKnown RBP10.55□□□□□ -0.72
SKA3-201ENST00000298260 RNF185Q96GF1 192 aa10.55□□□□□ -0.72
SKA3-201ENST00000298260 RASL11BQ9BPW5 248 aa10.55□□□□□ -0.72
SKA3-201ENST00000298260 PGPEP1Q9NXJ5 209 aa10.55□□□□□ -0.72
SKA3-201ENST00000298260 DPM2O94777 84 aa10.55□□□□□ -0.72
SKA3-201ENST00000298260 TNFRSF6BO95407 300 aa10.55□□□□□ -0.72
SKA3-201ENST00000298260 IGHV1-46P01743 117 aa10.55□□□□□ -0.72
SKA3-201ENST00000298260 MORN3Q6PF18 240 aaPredicted RBP10.55□□□□□ -0.72
SKA3-201ENST00000298260 KIR2DL4Q99706 377 aa10.55□□□□□ -0.72
SKA3-201ENST00000298260 LRBAP50851 2863 aa10.55□□□□□ -0.72
SKA3-201ENST00000298260 LOC107984156A0A0G2JMH3 177 aa10.54□□□□□ -0.72
SKA3-201ENST00000298260 IL4P05112 153 aa10.54□□□□□ -0.72
SKA3-201ENST00000298260 MZT1Q08AG7 82 aa10.54□□□□□ -0.72
SKA3-201ENST00000298260 ASCL5Q7RTU5 278 aa10.54□□□□□ -0.72
SKA3-201ENST00000298260 ZNF575Q86XF7 245 aa10.54□□□□□ -0.72
SKA3-201ENST00000298260 ARL17AQ8IVW1 177 aa10.54□□□□□ -0.72
SKA3-201ENST00000298260 MAP1LC3AQ9H492 121 aa10.54□□□□□ -0.72
SKA3-201ENST00000298260 PROCRQ9UNN8 238 aa10.54□□□□□ -0.72
SKA3-201ENST00000298260 A0A1B0GW15 77 aa10.54□□□□□ -0.72
SKA3-201ENST00000298260 FAM90A27PA6NNH2 459 aa10.54□□□□□ -0.72
SKA3-201ENST00000298260 INS-IGF2F8WCM5 200 aa10.54□□□□□ -0.72
SKA3-201ENST00000298260 ORM1P02763 201 aa10.54□□□□□ -0.72
SKA3-201ENST00000298260 PSMB2P49721 201 aa10.54□□□□□ -0.72
SKA3-201ENST00000298260 VMA21Q3ZAQ7 101 aa10.54□□□□□ -0.72
SKA3-201ENST00000298260 Q6ZUT4 128 aa10.54□□□□□ -0.72
SKA3-201ENST00000298260 TTC9CQ8N5M4 171 aa10.54□□□□□ -0.72
SKA3-201ENST00000298260 DEFB104AQ8WTQ1 72 aa10.54□□□□□ -0.72
SKA3-201ENST00000298260 PRSS29PA6NIE9 313 aa10.53□□□□□ -0.72
SKA3-201ENST00000298260 TMEM164Q5U3C3 297 aa10.53□□□□□ -0.72
SKA3-201ENST00000298260 LYPD2Q6UXB3 125 aa10.53□□□□□ -0.72
SKA3-201ENST00000298260 RAB9BQ9NP90 201 aa10.53□□□□□ -0.72
SKA3-201ENST00000298260 DCHS2Q6V1P9 2916 aa10.53□□□□□ -0.72
SKA3-201ENST00000298260 ASH1LQ9NR48 2969 aaKnown RBP10.53□□□□□ -0.72
SKA3-201ENST00000298260 ZNF502Q8TBZ5 544 aa10.53□□□□□ -0.72
SKA3-201ENST00000298260 FBXL15Q9H469 300 aa10.53□□□□□ -0.72
SKA3-201ENST00000298260 IGHV3-35A0A0C4DH35 117 aa10.53□□□□□ -0.72
SKA3-201ENST00000298260 B5MCH6 92 aa10.53□□□□□ -0.72
SKA3-201ENST00000298260 MED13LQ71F56 2210 aa10.52□□□□□ -0.73
SKA3-201ENST00000298260 SPRY2O43597 315 aa10.52□□□□□ -0.73
SKA3-201ENST00000298260 Q6AWC8 147 aa10.52□□□□□ -0.73
SKA3-201ENST00000298260 SLC25A15Q9Y619 301 aa10.52□□□□□ -0.73
SKA3-201ENST00000298260 BSNQ9UPA5 3926 aa10.52□□□□□ -0.73
SKA3-201ENST00000298260 LINC01549A6NIU2 74 aa10.52□□□□□ -0.73
SKA3-201ENST00000298260 IGHV3-23P01764 117 aa10.52□□□□□ -0.73
SKA3-201ENST00000298260 TRGV3P03979 118 aa10.52□□□□□ -0.73
SKA3-201ENST00000298260 HLA-DRB4P13762 266 aa10.52□□□□□ -0.73
SKA3-201ENST00000298260 CARD19Q96LW7 228 aa10.52□□□□□ -0.73
SKA3-201ENST00000298260 SCNM1Q9BWG6 230 aa10.52□□□□□ -0.73
SKA3-201ENST00000298260 C1QTNF4Q9BXJ3 329 aa10.52□□□□□ -0.73
SKA3-201ENST00000298260 SPRY4Q9C004 299 aa10.52□□□□□ -0.73
SKA3-201ENST00000298260 HLA-DRB4X5D2U9 266 aa10.52□□□□□ -0.73
SKA3-201ENST00000298260 C3orf36Q3SXR2 165 aa10.51□□□□□ -0.73
SKA3-201ENST00000298260 SHANK2-AS3Q9BTD1 123 aa10.51□□□□□ -0.73
SKA3-201ENST00000298260 TMEM14CQ9P0S9 112 aa10.51□□□□□ -0.73
SKA3-201ENST00000298260 ARHGAP32A7KAX9 2087 aa10.51□□□□□ -0.73
SKA3-201ENST00000298260 CFAP126Q5VTH2 177 aa10.51□□□□□ -0.73
SKA3-201ENST00000298260 Q6ZQT7 251 aa10.51□□□□□ -0.73
SKA3-201ENST00000298260 LINC00574Q9H8X3 128 aa10.51□□□□□ -0.73
SKA3-201ENST00000298260 PTPRQQ9UMZ3 2332 aa10.51□□□□□ -0.73
SKA3-201ENST00000298260 TRBV7-3A0A075B6L6 115 aa10.5□□□□□ -0.73
SKA3-201ENST00000298260 TEX22C9J3V5 150 aa10.5□□□□□ -0.73
SKA3-201ENST00000298260 H3BVH4 76 aa10.5□□□□□ -0.73
SKA3-201ENST00000298260 TM4SF5O14894 197 aa10.5□□□□□ -0.73
SKA3-201ENST00000298260 TSPAN13O95857 204 aa10.5□□□□□ -0.73
SKA3-201ENST00000298260 ERCC8Q13216 396 aa10.5□□□□□ -0.73
SKA3-201ENST00000298260 RPEQ96AT9 228 aa10.5□□□□□ -0.73
SKA3-201ENST00000298260 UFC1Q9Y3C8 167 aa10.5□□□□□ -0.73
SKA3-201ENST00000298260 I3L2K1 104 aa10.49□□□□□ -0.73
SKA3-201ENST00000298260 PIP4P1Q86T03 277 aa10.49□□□□□ -0.73
SKA3-201ENST00000298260 ZNF491Q8N8L2 437 aa10.49□□□□□ -0.73
SKA3-201ENST00000298260 CCL17Q92583 94 aa10.49□□□□□ -0.73
SKA3-201ENST00000298260 PRR25Q96S07 402 aa10.49□□□□□ -0.73
SKA3-201ENST00000298260 ANAPC13Q9BS18 74 aa10.49□□□□□ -0.73
SKA3-201ENST00000298260 COL6A6A6NMZ7 2263 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms