RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 IGHV3-30P01768 117 aa-0.25□□□□□ -2.45
SS18-214ENST00000580003 C1QBP02746 253 aa-0.25□□□□□ -2.45
SS18-214ENST00000580003 IGHV3-30-5P0DP03 117 aa-0.25□□□□□ -2.45
SS18-214ENST00000580003 IDO1P14902 403 aa-0.25□□□□□ -2.45
SS18-214ENST00000580003 NISCHQ9Y2I1 1504 aa-0.25□□□□□ -2.45
SS18-214ENST00000580003 HRNRQ86YZ3 2850 aaPredicted RBP-0.25□□□□□ -2.45
SS18-214ENST00000580003 MYO5AQ9Y4I1 1855 aaKnown RBP-0.26□□□□□ -2.45
SS18-214ENST00000580003 TRPM1Q7Z4N2 1603 aa-0.26□□□□□ -2.45
SS18-214ENST00000580003 G3V2T6 193 aa-0.26□□□□□ -2.45
SS18-214ENST00000580003 ATP5HO75947 161 aa-0.26□□□□□ -2.45
SS18-214ENST00000580003 TRGC2P03986 189 aa-0.26□□□□□ -2.45
SS18-214ENST00000580003 CYBAP13498 195 aa-0.26□□□□□ -2.45
SS18-214ENST00000580003 DIAPH2-AS1Q14236 149 aa-0.26□□□□□ -2.45
SS18-214ENST00000580003 XAF1Q6GPH4 301 aa-0.26□□□□□ -2.45
SS18-214ENST00000580003 AP1S3Q96PC3 154 aa-0.26□□□□□ -2.45
SS18-214ENST00000580003 UHRF1BP1Q6BDS2 1440 aa-0.27□□□□□ -2.45
SS18-214ENST00000580003 MIA2Q96PC5 1412 aa-0.27□□□□□ -2.45
SS18-214ENST00000580003 OGNP20774 298 aaKnown RBP-0.27□□□□□ -2.45
SS18-214ENST00000580003 VMA21Q3ZAQ7 101 aa-0.27□□□□□ -2.45
SS18-214ENST00000580003 FAM216BQ8N7L0 139 aa-0.27□□□□□ -2.45
SS18-214ENST00000580003 PHB2Q99623 299 aa-0.27□□□□□ -2.45
SS18-214ENST00000580003 LIMD2Q9BT23 127 aa-0.27□□□□□ -2.45
SS18-214ENST00000580003 ARMC1Q9NVT9 282 aa-0.27□□□□□ -2.45
SS18-214ENST00000580003 MUC12Q9UKN1 5478 aa-0.27□□□□□ -2.45
SS18-214ENST00000580003 RIIAD1A6NNX1 92 aa-0.28□□□□□ -2.45
SS18-214ENST00000580003 H7C1C5 153 aa-0.28□□□□□ -2.45
SS18-214ENST00000580003 CXCL1P09341 107 aa-0.28□□□□□ -2.45
SS18-214ENST00000580003 RPL37P61927 97 aaKnown RBP-0.28□□□□□ -2.45
SS18-214ENST00000580003 LCN6P62502 163 aa-0.28□□□□□ -2.45
SS18-214ENST00000580003 ANGPTL5Q86XS5 388 aa-0.28□□□□□ -2.45
SS18-214ENST00000580003 EFCAB11Q9BUY7 163 aa-0.28□□□□□ -2.45
SS18-214ENST00000580003 NAT8BQ9UHF3 227 aa-0.28□□□□□ -2.45
SS18-214ENST00000580003 UBR2Q8IWV8 1755 aa-0.28□□□□□ -2.45
SS18-214ENST00000580003 BCORL1Q5H9F3 1711 aa-0.29□□□□□ -2.46
SS18-214ENST00000580003 PIAS1O75925 651 aa-0.29□□□□□ -2.46
SS18-214ENST00000580003 RPS3P23396 243 aaKnown RBP eCLIP-0.29□□□□□ -2.46
SS18-214ENST00000580003 ERVS71-1P61550 626 aa-0.29□□□□□ -2.46
SS18-214ENST00000580003 AKR1C8PQ5T2L2 129 aa-0.29□□□□□ -2.46
SS18-214ENST00000580003 MALSU1Q96EH3 234 aa-0.29□□□□□ -2.46
SS18-214ENST00000580003 MCEEQ96PE7 176 aa-0.29□□□□□ -2.46
SS18-214ENST00000580003 SSR3Q9UNL2 185 aa-0.29□□□□□ -2.46
SS18-214ENST00000580003 CAMSAP2Q08AD1 1489 aa-0.29□□□□□ -2.46
SS18-214ENST00000580003 LY6G6CO95867 125 aa-0.3□□□□□ -2.46
SS18-214ENST00000580003 EVI2AP22794 236 aa-0.3□□□□□ -2.46
SS18-214ENST00000580003 INSL3P51460 131 aa-0.3□□□□□ -2.46
SS18-214ENST00000580003 Q5BKY6 102 aa-0.3□□□□□ -2.46
SS18-214ENST00000580003 GLYATL3Q5SZD4 288 aa-0.3□□□□□ -2.46
SS18-214ENST00000580003 GPX7Q96SL4 187 aaPredicted RBP-0.3□□□□□ -2.46
SS18-214ENST00000580003 PRNDQ9UKY0 176 aa-0.3□□□□□ -2.46
SS18-214ENST00000580003 TPRKBQ9Y3C4 175 aa-0.3□□□□□ -2.46
SS18-214ENST00000580003 PTPRDP23468 1912 aa-0.3□□□□□ -2.46
SS18-214ENST00000580003 GYPBP06028 91 aa-0.31□□□□□ -2.46
SS18-214ENST00000580003 CTXN2P0C2S0 81 aa-0.31□□□□□ -2.46
SS18-214ENST00000580003 PHBP35232 272 aa-0.31□□□□□ -2.46
SS18-214ENST00000580003 RPL35P42766 123 aaKnown RBP-0.31□□□□□ -2.46
SS18-214ENST00000580003 HBBP68871 147 aa-0.31□□□□□ -2.46
SS18-214ENST00000580003 MRPS36P82909 103 aaKnown RBP-0.31□□□□□ -2.46
SS18-214ENST00000580003 REEP5Q00765 189 aa-0.31□□□□□ -2.46
SS18-214ENST00000580003 TMED2Q15363 201 aa-0.31□□□□□ -2.46
SS18-214ENST00000580003 FKBP1CQ5VVH2 108 aa-0.31□□□□□ -2.46
SS18-214ENST00000580003 C1orf140Q5VVS0 124 aa-0.31□□□□□ -2.46
SS18-214ENST00000580003 PHF5AQ7RTV0 110 aaKnown RBP-0.31□□□□□ -2.46
SS18-214ENST00000580003 NEK7Q8TDX7 302 aa-0.31□□□□□ -2.46
SS18-214ENST00000580003 PLEKHB2Q96CS7 222 aa-0.31□□□□□ -2.46
SS18-214ENST00000580003 PBDC1Q9BVG4 233 aa-0.31□□□□□ -2.46
SS18-214ENST00000580003 LYRM2Q9NU23 88 aaPredicted RBP-0.31□□□□□ -2.46
SS18-214ENST00000580003 OTOGQ6ZRI0 2925 aa-0.31□□□□□ -2.46
SS18-214ENST00000580003 DOCK4Q8N1I0 1966 aa-0.32□□□□□ -2.46
SS18-214ENST00000580003 K7ERJ3 54 aa-0.32□□□□□ -2.46
SS18-214ENST00000580003 NEDD8Q15843 81 aa-0.32□□□□□ -2.46
SS18-214ENST00000580003 CROCCP2Q86T23 111 aa-0.32□□□□□ -2.46
SS18-214ENST00000580003 LINC00269Q8N2A0 174 aa-0.32□□□□□ -2.46
SS18-214ENST00000580003 SREK1IP1Q8N9Q2 155 aaPredicted RBP-0.32□□□□□ -2.46
SS18-214ENST00000580003 OR4C12Q96R67 309 aa-0.32□□□□□ -2.46
SS18-214ENST00000580003 OR2H1Q9GZK4 316 aa-0.32□□□□□ -2.46
SS18-214ENST00000580003 SH3BGRL3Q9H299 93 aa-0.32□□□□□ -2.46
SS18-214ENST00000580003 LRP1Q07954 4544 aaKnown RBP-0.32□□□□□ -2.46
SS18-214ENST00000580003 KDM6BO15054 1643 aa-0.33□□□□□ -2.46
SS18-214ENST00000580003 IGF2RP11717 2491 aa-0.33□□□□□ -2.46
SS18-214ENST00000580003 CST7O76096 145 aa-0.33□□□□□ -2.46
SS18-214ENST00000580003 GNG5P63218 68 aa-0.33□□□□□ -2.46
SS18-214ENST00000580003 MRPS25P82663 173 aaKnown RBP-0.33□□□□□ -2.46
SS18-214ENST00000580003 NUP35Q8NFH5 326 aa-0.33□□□□□ -2.46
SS18-214ENST00000580003 PAIP2Q9BPZ3 127 aaKnown RBP-0.33□□□□□ -2.46
SS18-214ENST00000580003 RTL8AQ9BWD3 113 aa-0.33□□□□□ -2.46
SS18-214ENST00000580003 ASB4Q9Y574 426 aa-0.33□□□□□ -2.46
SS18-214ENST00000580003 PIEZO1Q92508 2521 aa-0.34□□□□□ -2.46
SS18-214ENST00000580003 ATG12O94817 140 aa-0.34□□□□□ -2.46
SS18-214ENST00000580003 PCF11O94913 1555 aaKnown RBP-0.34□□□□□ -2.46
SS18-214ENST00000580003 MSMO1Q15800 293 aa-0.34□□□□□ -2.46
SS18-214ENST00000580003 ZCCHC23Q6ZST2 131 aa-0.34□□□□□ -2.46
SS18-214ENST00000580003 KIAA1107Q9UPP5 1409 aa-0.34□□□□□ -2.46
SS18-214ENST00000580003 RTL9Q8NET4 1388 aa-0.34□□□□□ -2.46
SS18-214ENST00000580003 ADGRL3Q9HAR2 1447 aa-0.35□□□□□ -2.47
SS18-214ENST00000580003 PPP1R2P41236 205 aa-0.35□□□□□ -2.47
SS18-214ENST00000580003 SNRPD3P62318 126 aaKnown RBP-0.35□□□□□ -2.47
SS18-214ENST00000580003 FADDQ13158 208 aa-0.35□□□□□ -2.47
SS18-214ENST00000580003 HACD4Q5VWC8 232 aa-0.35□□□□□ -2.47
SS18-214ENST00000580003 OR5AK2Q8NH90 309 aa-0.35□□□□□ -2.47
SS18-214ENST00000580003 PROK2Q9HC23 129 aa-0.35□□□□□ -2.47
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms