RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 WI2-2373I1.2A0A1W2PRP0 233 aa7.73□□□□□ -1.17
VPS53-206ENST00000570359 OOSP1A8MZH6 123 aa7.73□□□□□ -1.17
VPS53-206ENST00000570359 J3KRW8 73 aa7.73□□□□□ -1.17
VPS53-206ENST00000570359 IGLC2P0DOY2 106 aa7.73□□□□□ -1.17
VPS53-206ENST00000570359 TOMM20LQ6UXN7 152 aa7.73□□□□□ -1.17
VPS53-206ENST00000570359 GTSF1Q8WW33 167 aa7.73□□□□□ -1.17
VPS53-206ENST00000570359 NAGKQ9UJ70 344 aa7.73□□□□□ -1.17
VPS53-206ENST00000570359 AVPP01185 164 aa7.72□□□□□ -1.17
VPS53-206ENST00000570359 LTAP01374 205 aa7.72□□□□□ -1.17
VPS53-206ENST00000570359 AMTP48728 403 aa7.72□□□□□ -1.17
VPS53-206ENST00000570359 PMCHL1Q16048 86 aa7.72□□□□□ -1.17
VPS53-206ENST00000570359 COL5A1-AS1Q5SY13 56 aa7.72□□□□□ -1.17
VPS53-206ENST00000570359 C5orf56Q8N8D9 126 aa7.72□□□□□ -1.17
VPS53-206ENST00000570359 GNB1LQ9BYB4 327 aa7.72□□□□□ -1.17
VPS53-206ENST00000570359 PSG8Q9UQ74 426 aa7.72□□□□□ -1.17
VPS53-206ENST00000570359 TEX15Q9BXT5 2789 aa7.72□□□□□ -1.17
VPS53-206ENST00000570359 TRAV30A0A087WSZ9 112 aa7.72□□□□□ -1.17
VPS53-206ENST00000570359 TRBV12-3P01733 135 aa7.72□□□□□ -1.17
VPS53-206ENST00000570359 TRGV3P03979 118 aa7.72□□□□□ -1.17
VPS53-206ENST00000570359 BLCAPP62952 87 aa7.72□□□□□ -1.17
VPS53-206ENST00000570359 ERCC8Q13216 396 aa7.72□□□□□ -1.17
VPS53-206ENST00000570359 EBI3Q14213 229 aa7.72□□□□□ -1.17
VPS53-206ENST00000570359 RNASEKQ6P5S7 137 aaKnown RBP7.72□□□□□ -1.17
VPS53-206ENST00000570359 TSKUQ8WUA8 353 aa7.72□□□□□ -1.17
VPS53-206ENST00000570359 CCDC140Q96MF4 163 aa7.72□□□□□ -1.17
VPS53-206ENST00000570359 RNF114Q9Y508 228 aa7.72□□□□□ -1.17
VPS53-206ENST00000570359 K7EP13 123 aa7.71□□□□□ -1.17
VPS53-206ENST00000570359 IGLV2-11P01706 119 aa7.71□□□□□ -1.17
VPS53-206ENST00000570359 TPPP2P59282 170 aa7.71□□□□□ -1.17
VPS53-206ENST00000570359 WDR73Q6P4I2 378 aa7.71□□□□□ -1.17
VPS53-206ENST00000570359 FAM110DQ8TAY7 271 aaPredicted RBP7.71□□□□□ -1.17
VPS53-206ENST00000570359 CSN3P07498 182 aa7.71□□□□□ -1.18
VPS53-206ENST00000570359 MSMBP08118 114 aa7.71□□□□□ -1.18
VPS53-206ENST00000570359 Q6ZWC4 215 aa7.71□□□□□ -1.18
VPS53-206ENST00000570359 TMEM75Q8N9X5 138 aa7.71□□□□□ -1.18
VPS53-206ENST00000570359 VN1R17PQ8TDU5 208 aa7.71□□□□□ -1.18
VPS53-206ENST00000570359 TMEM14CQ9P0S9 112 aa7.71□□□□□ -1.18
VPS53-206ENST00000570359 TRAV41A0A0B4J266 112 aa7.71□□□□□ -1.18
VPS53-206ENST00000570359 DIRC3C9JPN6 131 aa7.71□□□□□ -1.18
VPS53-206ENST00000570359 K7EQM0 130 aa7.71□□□□□ -1.18
VPS53-206ENST00000570359 HLA-DQA1P01909 254 aa7.71□□□□□ -1.18
VPS53-206ENST00000570359 PF4V1P10720 104 aa7.71□□□□□ -1.18
VPS53-206ENST00000570359 CSN1S1P47710 185 aa7.71□□□□□ -1.18
VPS53-206ENST00000570359 RPL11P62913 178 aaKnown RBP7.71□□□□□ -1.18
VPS53-206ENST00000570359 PAX8Q06710 450 aa7.71□□□□□ -1.18
VPS53-206ENST00000570359 ZNF705AQ6ZN79 300 aaPredicted RBP7.71□□□□□ -1.18
VPS53-206ENST00000570359 TEX43Q6ZNM6 134 aa7.71□□□□□ -1.18
VPS53-206ENST00000570359 SIGLECL1Q8N7X8 197 aa7.71□□□□□ -1.18
VPS53-206ENST00000570359 MBD6Q96DN6 1003 aa7.71□□□□□ -1.18
VPS53-206ENST00000570359 DUX5Q96PT3 197 aa7.71□□□□□ -1.18
VPS53-206ENST00000570359 VGLL1Q99990 258 aa7.71□□□□□ -1.18
VPS53-206ENST00000570359 MLST8Q9BVC4 326 aa7.71□□□□□ -1.18
VPS53-206ENST00000570359 MOB4Q9Y3A3 225 aa7.71□□□□□ -1.18
VPS53-206ENST00000570359 KLF12Q9Y4X4 402 aa7.71□□□□□ -1.18
VPS53-206ENST00000570359 MXRA5Q9NR99 2828 aa7.7□□□□□ -1.18
VPS53-206ENST00000570359 ZNF138P52744 262 aa7.7□□□□□ -1.18
VPS53-206ENST00000570359 KRTAP10-9P60411 292 aa7.7□□□□□ -1.18
VPS53-206ENST00000570359 ATOH7Q8N100 152 aa7.7□□□□□ -1.18
VPS53-206ENST00000570359 ZNF502Q8TBZ5 544 aa7.7□□□□□ -1.18
VPS53-206ENST00000570359 SMAD5-AS1Q9Y6J3 95 aa7.7□□□□□ -1.18
VPS53-206ENST00000570359 NBPF19A0A087WUL8 3843 aa7.7□□□□□ -1.18
VPS53-206ENST00000570359 CHD6Q8TD26 2715 aa7.7□□□□□ -1.18
VPS53-206ENST00000570359 TRAV9-1A0A075B6T8 112 aa7.7□□□□□ -1.18
VPS53-206ENST00000570359 A8MWL6 223 aa7.7□□□□□ -1.18
VPS53-206ENST00000570359 PRAC2D3DTV9 90 aa7.7□□□□□ -1.18
VPS53-206ENST00000570359 H0Y8G0 127 aa7.7□□□□□ -1.18
VPS53-206ENST00000570359 CHEK1O14757 476 aa7.7□□□□□ -1.18
VPS53-206ENST00000570359 MRPS12O15235 138 aaKnown RBP7.7□□□□□ -1.18
VPS53-206ENST00000570359 COX6B1P14854 86 aa7.7□□□□□ -1.18
VPS53-206ENST00000570359 DEFB1P60022 68 aa7.7□□□□□ -1.18
VPS53-206ENST00000570359 PSG3Q16557 428 aa7.7□□□□□ -1.18
VPS53-206ENST00000570359 TDRG1Q3Y452 100 aa7.7□□□□□ -1.18
VPS53-206ENST00000570359 HIST2H2BCQ6DN03 193 aa7.7□□□□□ -1.18
VPS53-206ENST00000570359 PIFOQ8TCI5 191 aa7.7□□□□□ -1.18
VPS53-206ENST00000570359 SORL1Q92673 2214 aa7.7□□□□□ -1.18
VPS53-206ENST00000570359 PRRC2AP48634 2157 aaKnown RBP7.69□□□□□ -1.18
VPS53-206ENST00000570359 SCGB2A1O75556 95 aa7.69□□□□□ -1.18
VPS53-206ENST00000570359 GOSR1O95249 250 aa7.69□□□□□ -1.18
VPS53-206ENST00000570359 ARMS2P0C7Q2 107 aa7.69□□□□□ -1.18
VPS53-206ENST00000570359 CT45A10P0DMU9 189 aa7.69□□□□□ -1.18
VPS53-206ENST00000570359 RPL7P18124 248 aaKnown RBP7.69□□□□□ -1.18
VPS53-206ENST00000570359 ATP5G2Q06055 141 aa7.69□□□□□ -1.18
VPS53-206ENST00000570359 FAM231DQ6ZW35 169 aa7.69□□□□□ -1.18
VPS53-206ENST00000570359 ORAOV1Q8WV07 137 aa7.69□□□□□ -1.18
VPS53-206ENST00000570359 KLK15Q9H2R5 256 aa7.69□□□□□ -1.18
VPS53-206ENST00000570359 PAM16Q9Y3D7 125 aa7.69□□□□□ -1.18
VPS53-206ENST00000570359 SERTM2A0A1B0GWG4 89 aa7.69□□□□□ -1.18
VPS53-206ENST00000570359 RNF223E7ERA6 249 aa7.69□□□□□ -1.18
VPS53-206ENST00000570359 TGFAP01135 160 aa7.69□□□□□ -1.18
VPS53-206ENST00000570359 MT-ND6P03923 174 aa7.69□□□□□ -1.18
VPS53-206ENST00000570359 SRD5A1P18405 259 aa7.69□□□□□ -1.18
VPS53-206ENST00000570359 PPIFP30405 207 aaKnown RBP7.69□□□□□ -1.18
VPS53-206ENST00000570359 CRIP1P50238 77 aa7.69□□□□□ -1.18
VPS53-206ENST00000570359 HBBP68871 147 aa7.69□□□□□ -1.18
VPS53-206ENST00000570359 EEF1AKMT3Q96AZ1 226 aa7.69□□□□□ -1.18
VPS53-206ENST00000570359 TRBV9A0A0B4J1U6 114 aa7.68□□□□□ -1.18
VPS53-206ENST00000570359 C19orf71A6NCJ1 209 aa7.68□□□□□ -1.18
VPS53-206ENST00000570359 TMEM8BA6NDV4 472 aa7.68□□□□□ -1.18
VPS53-206ENST00000570359 TCF21O43680 179 aa7.68□□□□□ -1.18
VPS53-206ENST00000570359 HIST2H2BDQ6DRA6 164 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 120.6 ms