RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 C2orf70A6NJV1 201 aa13.97□□□□□ -0.17
VIM-209ENST00000544301 SH2D1AO60880 128 aa13.97□□□□□ -0.17
VIM-209ENST00000544301 HLA-DMBP28068 263 aa13.97□□□□□ -0.17
VIM-209ENST00000544301 RELQ04864 619 aaPredicted RBP13.97□□□□□ -0.17
VIM-209ENST00000544301 SAPCD1Q5SSQ6 148 aa13.97□□□□□ -0.17
VIM-209ENST00000544301 VPS13CQ709C8 3753 aa13.96□□□□□ -0.17
VIM-209ENST00000544301 BTF3P20290 206 aaKnown RBP13.96□□□□□ -0.17
VIM-209ENST00000544301 PMCHL1Q16048 86 aa13.96□□□□□ -0.17
VIM-209ENST00000544301 PRR25Q96S07 402 aa13.96□□□□□ -0.17
VIM-209ENST00000544301 TPPP3Q9BW30 176 aa13.96□□□□□ -0.17
VIM-209ENST00000544301 IGHV3OR16-10A0A075B7F0 116 aa13.96□□□□□ -0.18
VIM-209ENST00000544301 TMEM189A5PLL7 270 aa13.96□□□□□ -0.18
VIM-209ENST00000544301 FBLL1A6NHQ2 334 aaKnown RBP13.96□□□□□ -0.18
VIM-209ENST00000544301 LINC00614P0C842 121 aa13.96□□□□□ -0.18
VIM-209ENST00000544301 RNF224P0DH78 156 aa13.96□□□□□ -0.18
VIM-209ENST00000544301 CLEC19AQ6UXS0 136 aa13.96□□□□□ -0.18
VIM-209ENST00000544301 TMEM219Q86XT9 240 aa13.96□□□□□ -0.18
VIM-209ENST00000544301 VGLL1Q99990 258 aa13.96□□□□□ -0.18
VIM-209ENST00000544301 CLEC5AQ9NY25 188 aa13.96□□□□□ -0.18
VIM-209ENST00000544301 IGHV1-24A0A0C4DH33 117 aa13.95□□□□□ -0.18
VIM-209ENST00000544301 BUB3O43684 328 aa13.95□□□□□ -0.18
VIM-209ENST00000544301 GOSR1O95249 250 aa13.95□□□□□ -0.18
VIM-209ENST00000544301 CLPSL1A2RUU4 121 aa13.94□□□□□ -0.18
VIM-209ENST00000544301 MRPL52Q86TS9 123 aaKnown RBP13.94□□□□□ -0.18
VIM-209ENST00000544301 ATOH7Q8N100 152 aa13.94□□□□□ -0.18
VIM-209ENST00000544301 Q8TAT8 98 aa13.94□□□□□ -0.18
VIM-209ENST00000544301 EEF1AKMT3Q96AZ1 226 aa13.94□□□□□ -0.18
VIM-209ENST00000544301 ABCA2Q9BZC7 2435 aa13.94□□□□□ -0.18
VIM-209ENST00000544301 A0A087X0K7 114 aa13.94□□□□□ -0.18
VIM-209ENST00000544301 TMSB15BA0A087X1C1 80 aa13.94□□□□□ -0.18
VIM-209ENST00000544301 IGHV1-69DA0A0B4J2H0 117 aa13.94□□□□□ -0.18
VIM-209ENST00000544301 IGHV4-61A0A0C4DH41 118 aa13.94□□□□□ -0.18
VIM-209ENST00000544301 IGHV1-69P01742 117 aa13.94□□□□□ -0.18
VIM-209ENST00000544301 RAB9AP51151 201 aa13.94□□□□□ -0.18
VIM-209ENST00000544301 PIMREGQ9BSJ6 248 aa13.94□□□□□ -0.18
VIM-209ENST00000544301 CFAP46Q8IYW2 2715 aa13.94□□□□□ -0.18
VIM-209ENST00000544301 TRBV7-1A0A0A6YYK4 115 aa13.93□□□□□ -0.18
VIM-209ENST00000544301 NUTF2P61970 127 aaKnown RBP13.93□□□□□ -0.18
VIM-209ENST00000544301 LYZL1Q6UWQ5 148 aa13.93□□□□□ -0.18
VIM-209ENST00000544301 PIFOQ8TCI5 191 aa13.93□□□□□ -0.18
VIM-209ENST00000544301 MOB4Q9Y3A3 225 aa13.93□□□□□ -0.18
VIM-209ENST00000544301 CACNA1BQ00975 2339 aa13.93□□□□□ -0.18
VIM-209ENST00000544301 FOSL1P15407 271 aa13.93□□□□□ -0.18
VIM-209ENST00000544301 ZNF138P52744 262 aa13.93□□□□□ -0.18
VIM-209ENST00000544301 SPATA12Q7Z6I5 190 aa13.93□□□□□ -0.18
VIM-209ENST00000544301 CCL19Q99731 98 aa13.93□□□□□ -0.18
VIM-209ENST00000544301 ZFHX3Q15911 3703 aa13.92□□□□□ -0.18
VIM-209ENST00000544301 ZNF80P51504 273 aaPredicted RBP13.92□□□□□ -0.18
VIM-209ENST00000544301 ZNF493Q6ZR52 646 aa13.92□□□□□ -0.18
VIM-209ENST00000544301 TMEM70Q9BUB7 260 aa13.92□□□□□ -0.18
VIM-209ENST00000544301 IGHV3-66A0A0C4DH42 116 aa13.91□□□□□ -0.18
VIM-209ENST00000544301 M0QZK8 103 aa13.91□□□□□ -0.18
VIM-209ENST00000544301 IGLC3P0DOY3 106 aa13.91□□□□□ -0.18
VIM-209ENST00000544301 MAJINQ3KP22 176 aa13.91□□□□□ -0.18
VIM-209ENST00000544301 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.91□□□□□ -0.18
VIM-209ENST00000544301 BRD3OSQ6XYD6 125 aa13.91□□□□□ -0.18
VIM-209ENST00000544301 C10orf105Q8TEF2 133 aa13.91□□□□□ -0.18
VIM-209ENST00000544301 C19orf54Q5BKX5 351 aa13.91□□□□□ -0.18
VIM-209ENST00000544301 DMRTA1Q5VZB9 504 aa13.91□□□□□ -0.18
VIM-209ENST00000544301 LINC00173Q6ZV60 143 aa13.91□□□□□ -0.18
VIM-209ENST00000544301 PIEZO1Q92508 2521 aa13.9□□□□□ -0.18
VIM-209ENST00000544301 TRAV41A0A0B4J266 112 aa13.9□□□□□ -0.18
VIM-209ENST00000544301 TRAV40A0A0B4J280 105 aa13.9□□□□□ -0.18
VIM-209ENST00000544301 PRAC2D3DTV9 90 aa13.9□□□□□ -0.18
VIM-209ENST00000544301 BMI1P35226 326 aa13.9□□□□□ -0.18
VIM-209ENST00000544301 ATP5G2Q06055 141 aa13.9□□□□□ -0.18
VIM-209ENST00000544301 UQCR10Q9UDW1 63 aa13.9□□□□□ -0.18
VIM-209ENST00000544301 TMEM213A2RRL7 107 aa13.9□□□□□ -0.18
VIM-209ENST00000544301 CRXO43186 299 aaPredicted RBP13.9□□□□□ -0.18
VIM-209ENST00000544301 LEPROTL1O95214 131 aa13.9□□□□□ -0.18
VIM-209ENST00000544301 CSN3P07498 182 aa13.9□□□□□ -0.18
VIM-209ENST00000544301 ERCC8Q13216 396 aa13.9□□□□□ -0.18
VIM-209ENST00000544301 RNF182Q8N6D2 247 aa13.9□□□□□ -0.18
VIM-209ENST00000544301 MEGF9Q9H1U4 602 aa13.9□□□□□ -0.18
VIM-209ENST00000544301 SPTAN1Q13813 2472 aaKnown RBP13.89□□□□□ -0.19
VIM-209ENST00000544301 CACNA1AO00555 2505 aa13.89□□□□□ -0.19
VIM-209ENST00000544301 TRAV9-2A0A087WT02 112 aa13.89□□□□□ -0.19
VIM-209ENST00000544301 CRIP2P52943 208 aaPredicted RBP13.89□□□□□ -0.19
VIM-209ENST00000544301 RPS20P60866 119 aaKnown RBP13.89□□□□□ -0.19
VIM-209ENST00000544301 SSTP61278 116 aa13.89□□□□□ -0.19
VIM-209ENST00000544301 CYB5R2Q6BCY4 276 aa13.89□□□□□ -0.19
VIM-209ENST00000544301 KLHDC1Q8N7A1 406 aa13.89□□□□□ -0.19
VIM-209ENST00000544301 LINC00527Q9UJ94 153 aa13.89□□□□□ -0.19
VIM-209ENST00000544301 IGHV3OR16-13A0A075B7E8 117 aa13.88□□□□□ -0.19
VIM-209ENST00000544301 IGHV3-74A0A0B4J1X5 117 aa13.88□□□□□ -0.19
VIM-209ENST00000544301 OR5AL1P0C617 328 aa13.88□□□□□ -0.19
VIM-209ENST00000544301 ZNF575Q86XF7 245 aa13.88□□□□□ -0.19
VIM-209ENST00000544301 METTL26Q96S19 204 aa13.88□□□□□ -0.19
VIM-209ENST00000544301 SLC50A1Q9BRV3 221 aa13.88□□□□□ -0.19
VIM-209ENST00000544301 SYS1-DBNDD2H3BUS1 97 aa13.88□□□□□ -0.19
VIM-209ENST00000544301 NDUFS8O00217 210 aa13.88□□□□□ -0.19
VIM-209ENST00000544301 ZNF207O43670 478 aaKnown RBP13.88□□□□□ -0.19
VIM-209ENST00000544301 COL12A1Q99715 3063 aa13.88□□□□□ -0.19
VIM-209ENST00000544301 IGHV3-49A0A0A0MS15 119 aa13.87□□□□□ -0.19
VIM-209ENST00000544301 RBAKDNA6NC62 111 aa13.87□□□□□ -0.19
VIM-209ENST00000544301 IGHV4-38-2P0DP08 117 aa13.87□□□□□ -0.19
VIM-209ENST00000544301 SRSF2Q01130 221 aaKnown RBP13.87□□□□□ -0.19
VIM-209ENST00000544301 FAM104BQ5XKR9 115 aa13.87□□□□□ -0.19
VIM-209ENST00000544301 CLEC2AQ6UVW9 174 aa13.87□□□□□ -0.19
VIM-209ENST00000544301 U3KQE9 123 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms