RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 COL12A1Q99715 3063 aa10.7□□□□□ -0.7
RTN3-210ENST00000540798 G3V318 75 aa10.69□□□□□ -0.7
RTN3-210ENST00000540798 PSG9Q00887 426 aa10.69□□□□□ -0.7
RTN3-210ENST00000540798 SLAQ13239 276 aa10.69□□□□□ -0.7
RTN3-210ENST00000540798 PRNTQ86SH4 94 aa10.69□□□□□ -0.7
RTN3-210ENST00000540798 ATP6V0BQ99437 205 aa10.69□□□□□ -0.7
RTN3-210ENST00000540798 SOX21Q9Y651 276 aaPredicted RBP10.69□□□□□ -0.7
RTN3-210ENST00000540798 USP9XQ93008 2570 aaPredicted RBP10.69□□□□□ -0.7
RTN3-210ENST00000540798 SERTM2A0A1B0GWG4 89 aa10.69□□□□□ -0.7
RTN3-210ENST00000540798 APCSP02743 223 aa10.69□□□□□ -0.7
RTN3-210ENST00000540798 COL5A1-AS1Q5SY13 56 aa10.69□□□□□ -0.7
RTN3-210ENST00000540798 PSG8Q9UQ74 426 aa10.69□□□□□ -0.7
RTN3-210ENST00000540798 SH2D7A6NKC9 451 aaPredicted RBP10.69□□□□□ -0.7
RTN3-210ENST00000540798 K7EQM0 130 aa10.69□□□□□ -0.7
RTN3-210ENST00000540798 IGHV4-38-2P0DP08 117 aa10.69□□□□□ -0.7
RTN3-210ENST00000540798 TOMM20LQ6UXN7 152 aa10.69□□□□□ -0.7
RTN3-210ENST00000540798 COX8CQ7Z4L0 72 aa10.69□□□□□ -0.7
RTN3-210ENST00000540798 ZC2HC1AQ96GY0 325 aa10.69□□□□□ -0.7
RTN3-210ENST00000540798 NAGKQ9UJ70 344 aa10.69□□□□□ -0.7
RTN3-210ENST00000540798 AKAP6Q13023 2319 aa10.68□□□□□ -0.7
RTN3-210ENST00000540798 IGHV3OR16-10A0A075B7F0 116 aa10.68□□□□□ -0.7
RTN3-210ENST00000540798 MSMBP08118 114 aa10.68□□□□□ -0.7
RTN3-210ENST00000540798 GPR183P32249 361 aa10.68□□□□□ -0.7
RTN3-210ENST00000540798 FOXA3P55318 350 aaPredicted RBP10.68□□□□□ -0.7
RTN3-210ENST00000540798 BRD3OSQ6XYD6 125 aa10.68□□□□□ -0.7
RTN3-210ENST00000540798 TRBV7-1A0A0A6YYK4 115 aa10.68□□□□□ -0.7
RTN3-210ENST00000540798 DSCR9P59020 149 aa10.68□□□□□ -0.7
RTN3-210ENST00000540798 TMEM219Q86XT9 240 aa10.68□□□□□ -0.7
RTN3-210ENST00000540798 AAMDCQ9H7C9 122 aa10.68□□□□□ -0.7
RTN3-210ENST00000540798 A0A087X0K7 114 aa10.67□□□□□ -0.7
RTN3-210ENST00000540798 CLPSL1A2RUU4 121 aa10.67□□□□□ -0.7
RTN3-210ENST00000540798 CLEC3BP05452 202 aa10.67□□□□□ -0.7
RTN3-210ENST00000540798 TPPP2P59282 170 aa10.67□□□□□ -0.7
RTN3-210ENST00000540798 TCF24Q7RTU0 167 aa10.67□□□□□ -0.7
RTN3-210ENST00000540798 M0R3E3 92 aa10.67□□□□□ -0.7
RTN3-210ENST00000540798 BRI3O95415 125 aa10.67□□□□□ -0.7
RTN3-210ENST00000540798 KIAA1644Q3SXP7 199 aa10.67□□□□□ -0.7
RTN3-210ENST00000540798 BAGE3Q86Y29 109 aa10.67□□□□□ -0.7
RTN3-210ENST00000540798 EEF1AKMT3Q96AZ1 226 aa10.67□□□□□ -0.7
RTN3-210ENST00000540798 DAZAP1Q96EP5 407 aaKnown RBP10.67□□□□□ -0.7
RTN3-210ENST00000540798 K7EP13 123 aa10.67□□□□□ -0.7
RTN3-210ENST00000540798 IGHG4P01861 327 aa10.67□□□□□ -0.7
RTN3-210ENST00000540798 SRIP30626 198 aa10.67□□□□□ -0.7
RTN3-210ENST00000540798 RBPMS2Q6ZRY4 209 aaKnown RBP10.67□□□□□ -0.7
RTN3-210ENST00000540798 TRAV41A0A0B4J266 112 aa10.66□□□□□ -0.7
RTN3-210ENST00000540798 A6NDX4 124 aa10.66□□□□□ -0.7
RTN3-210ENST00000540798 APOHP02749 345 aaPredicted RBP10.66□□□□□ -0.7
RTN3-210ENST00000540798 IGF1P05019 195 aa10.66□□□□□ -0.7
RTN3-210ENST00000540798 CRIP1P50238 77 aa10.66□□□□□ -0.7
RTN3-210ENST00000540798 KLF5Q13887 457 aaPredicted RBP10.66□□□□□ -0.7
RTN3-210ENST00000540798 BUB3O43684 328 aa10.66□□□□□ -0.7
RTN3-210ENST00000540798 COL8A1P27658 744 aa10.66□□□□□ -0.7
RTN3-210ENST00000540798 RAB9AP51151 201 aa10.66□□□□□ -0.7
RTN3-210ENST00000540798 HBBP68871 147 aa10.66□□□□□ -0.7
RTN3-210ENST00000540798 OR4C5Q8NGB2 326 aa10.66□□□□□ -0.7
RTN3-210ENST00000540798 FAM223BA6NKX1 122 aa10.65□□□□□ -0.7
RTN3-210ENST00000540798 Q6ZWC4 215 aa10.65□□□□□ -0.7
RTN3-210ENST00000540798 FAM223AQ8IWN6 122 aa10.65□□□□□ -0.7
RTN3-210ENST00000540798 MS4A10Q96PG2 267 aa10.65□□□□□ -0.7
RTN3-210ENST00000540798 MIEN1Q9BRT3 115 aa10.65□□□□□ -0.7
RTN3-210ENST00000540798 SELENOKQ9Y6D0 94 aa10.65□□□□□ -0.7
RTN3-210ENST00000540798 A0A096LNT2 108 aa10.65□□□□□ -0.7
RTN3-210ENST00000540798 FBLL1A6NHQ2 334 aaKnown RBP10.65□□□□□ -0.7
RTN3-210ENST00000540798 CFAP161Q6P656 301 aa10.65□□□□□ -0.7
RTN3-210ENST00000540798 KCNS1Q96KK3 526 aa10.65□□□□□ -0.7
RTN3-210ENST00000540798 RCHY1Q96PM5 261 aa10.65□□□□□ -0.7
RTN3-210ENST00000540798 UBR5O95071 2799 aaPredicted RBP10.65□□□□□ -0.71
RTN3-210ENST00000540798 CLEC19AQ6UXS0 136 aa10.64□□□□□ -0.71
RTN3-210ENST00000540798 C18orf32Q8TCD1 76 aa10.64□□□□□ -0.71
RTN3-210ENST00000540798 U3KQE9 123 aa10.64□□□□□ -0.71
RTN3-210ENST00000540798 ZNF462Q96JM2 2506 aa10.64□□□□□ -0.71
RTN3-210ENST00000540798 B4DSR2 109 aa10.64□□□□□ -0.71
RTN3-210ENST00000540798 PPBPP02775 128 aa10.64□□□□□ -0.71
RTN3-210ENST00000540798 GPX1P07203 203 aa10.64□□□□□ -0.71
RTN3-210ENST00000540798 BMI1P35226 326 aa10.64□□□□□ -0.71
RTN3-210ENST00000540798 CSN1S1P47710 185 aa10.64□□□□□ -0.71
RTN3-210ENST00000540798 SRSF1Q07955 248 aaKnown RBP eCLIP10.64□□□□□ -0.712e-7■■□□□ 13.4
RTN3-210ENST00000540798 A0A1W2PS18 150 aa10.64□□□□□ -0.71
RTN3-210ENST00000540798 HAX1O00165 279 aa10.64□□□□□ -0.71
RTN3-210ENST00000540798 IGHG2P01859 326 aa10.64□□□□□ -0.71
RTN3-210ENST00000540798 GATA3P23771 443 aa10.64□□□□□ -0.71
RTN3-210ENST00000540798 UBE2V1Q13404 147 aa10.64□□□□□ -0.71
RTN3-210ENST00000540798 GATD1Q8NB37 220 aa10.64□□□□□ -0.71
RTN3-210ENST00000540798 PGLYRP4Q96LB8 373 aa10.64□□□□□ -0.71
RTN3-210ENST00000540798 CHEK1O14757 476 aa10.63□□□□□ -0.71
RTN3-210ENST00000540798 SLC25A16P16260 332 aa10.63□□□□□ -0.71
RTN3-210ENST00000540798 ATP5G2Q06055 141 aa10.63□□□□□ -0.71
RTN3-210ENST00000540798 OR2D3Q8NGH3 330 aa10.63□□□□□ -0.71
RTN3-210ENST00000540798 CELSR2Q9HCU4 2923 aa10.63□□□□□ -0.71
RTN3-210ENST00000540798 ZNF843Q8N446 348 aa10.63□□□□□ -0.71
RTN3-210ENST00000540798 C8orf49Q96NF6 230 aa10.63□□□□□ -0.71
RTN3-210ENST00000540798 UTP20O75691 2785 aaKnown RBP10.63□□□□□ -0.71
RTN3-210ENST00000540798 H3BUA1 57 aa10.62□□□□□ -0.71
RTN3-210ENST00000540798 AVPP01185 164 aa10.62□□□□□ -0.71
RTN3-210ENST00000540798 PPIFP30405 207 aaKnown RBP10.62□□□□□ -0.71
RTN3-210ENST00000540798 NRGNQ92686 78 aa10.62□□□□□ -0.71
RTN3-210ENST00000540798 SSBP4Q9BWG4 385 aaPredicted RBP10.62□□□□□ -0.71
RTN3-210ENST00000540798 CELSR1Q9NYQ6 3014 aa10.62□□□□□ -0.71
RTN3-210ENST00000540798 IGHV3-35A0A0C4DH35 117 aa10.62□□□□□ -0.71
RTN3-210ENST00000540798 HINT1P49773 126 aaPredicted RBP10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms