RNA–Protein interactions for RNA: ENST00000529661.1

C11orf88-204, Transcript of chromosome 11 open reading frame 88, humanhuman

TSL 3

Gene C11orf88, Length 624 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C11orf88-204ENST00000529661 COPZ1P61923 177 aa2□□□□□ -2.09
C11orf88-204ENST00000529661 EMX2Q04743 252 aa2□□□□□ -2.09
C11orf88-204ENST00000529661 HAGHLQ6PII5 290 aaPredicted RBP2□□□□□ -2.09
C11orf88-204ENST00000529661 Q8IYB0 196 aa2□□□□□ -2.09
C11orf88-204ENST00000529661 CCL4L1Q8NHW4 92 aa2□□□□□ -2.09
C11orf88-204ENST00000529661 CHCHD1Q96BP2 118 aaKnown RBP2□□□□□ -2.09
C11orf88-204ENST00000529661 RETNLBQ9BQ08 111 aa2□□□□□ -2.09
C11orf88-204ENST00000529661 GGACTQ9BVM4 153 aa2□□□□□ -2.09
C11orf88-204ENST00000529661 CXCL16Q9H2A7 254 aa2□□□□□ -2.09
C11orf88-204ENST00000529661 C14orf132Q9NPU4 83 aa2□□□□□ -2.09
C11orf88-204ENST00000529661 LY96Q9Y6Y9 160 aa2□□□□□ -2.09
C11orf88-204ENST00000529661 GRIN2AQ12879 1464 aa2□□□□□ -2.09
C11orf88-204ENST00000529661 TMEM2Q9UHN6 1383 aa1.99□□□□□ -2.09
C11orf88-204ENST00000529661 RP1P56715 2156 aa1.99□□□□□ -2.09
C11orf88-204ENST00000529661 SMARCA2P51531 1590 aa1.99□□□□□ -2.09
C11orf88-204ENST00000529661 KIF13AQ9H1H9 1805 aa1.99□□□□□ -2.09
C11orf88-204ENST00000529661 IBA57-AS1B1ANH7 110 aa1.99□□□□□ -2.09
C11orf88-204ENST00000529661 LYRM1O43325 122 aa1.99□□□□□ -2.09
C11orf88-204ENST00000529661 IFNGP01579 166 aa1.99□□□□□ -2.09
C11orf88-204ENST00000529661 SLC25A5P05141 298 aaKnown RBP1.99□□□□□ -2.09
C11orf88-204ENST00000529661 MIFP14174 115 aa1.99□□□□□ -2.09
C11orf88-204ENST00000529661 S100PP25815 95 aa1.99□□□□□ -2.09
C11orf88-204ENST00000529661 ZNF93P35789 620 aaPredicted RBP1.99□□□□□ -2.09
C11orf88-204ENST00000529661 HINT1P49773 126 aaPredicted RBP1.99□□□□□ -2.09
C11orf88-204ENST00000529661 AKR1D1P51857 326 aa1.99□□□□□ -2.09
C11orf88-204ENST00000529661 ROMO1P60602 79 aa1.99□□□□□ -2.09
C11orf88-204ENST00000529661 LSM3P62310 102 aaKnown RBP1.99□□□□□ -2.09
C11orf88-204ENST00000529661 DIAPH2-AS1Q14236 149 aa1.99□□□□□ -2.09
C11orf88-204ENST00000529661 CDK5R1Q15078 307 aa1.99□□□□□ -2.09
C11orf88-204ENST00000529661 KRTAP21-2Q3LI59 83 aa1.99□□□□□ -2.09
C11orf88-204ENST00000529661 Q6ZTI0 123 aa1.99□□□□□ -2.09
C11orf88-204ENST00000529661 BANF2Q9H503 90 aa1.99□□□□□ -2.09
C11orf88-204ENST00000529661 NIT2Q9NQR4 276 aa1.99□□□□□ -2.09
C11orf88-204ENST00000529661 TNFSF18Q9UNG2 199 aa1.99□□□□□ -2.09
C11orf88-204ENST00000529661 LHFPL6Q9Y693 200 aa1.99□□□□□ -2.09
C11orf88-204ENST00000529661 LAMB2P55268 1798 aa1.99□□□□□ -2.09
C11orf88-204ENST00000529661 KIDINS220Q9ULH0 1771 aa1.99□□□□□ -2.09
C11orf88-204ENST00000529661 USP54Q70EL1 1684 aa1.99□□□□□ -2.09
C11orf88-204ENST00000529661 MYOM3Q5VTT5 1437 aa1.99□□□□□ -2.09
C11orf88-204ENST00000529661 HEATR5BQ9P2D3 2071 aa1.98□□□□□ -2.09
C11orf88-204ENST00000529661 ROCK2O75116 1388 aaKnown RBP1.98□□□□□ -2.09
C11orf88-204ENST00000529661 NPFFO15130 113 aa1.98□□□□□ -2.09
C11orf88-204ENST00000529661 PROSCO94903 275 aa1.98□□□□□ -2.09
C11orf88-204ENST00000529661 IGLV1-51P01701 117 aa1.98□□□□□ -2.09
C11orf88-204ENST00000529661 HBDP02042 147 aa1.98□□□□□ -2.09
C11orf88-204ENST00000529661 CCL4P13236 92 aa1.98□□□□□ -2.09
C11orf88-204ENST00000529661 TPT1P13693 172 aaKnown RBP1.98□□□□□ -2.09
C11orf88-204ENST00000529661 HLA-DRB4P13762 266 aa1.98□□□□□ -2.09
C11orf88-204ENST00000529661 FABP4P15090 132 aa1.98□□□□□ -2.09
C11orf88-204ENST00000529661 KRTAP12-4P60329 112 aa1.98□□□□□ -2.09
C11orf88-204ENST00000529661 HES1Q14469 280 aa1.98□□□□□ -2.09
C11orf88-204ENST00000529661 SS18Q15532 418 aa1.98□□□□□ -2.09
C11orf88-204ENST00000529661 TMEM91Q6ZNR0 172 aa1.98□□□□□ -2.09
C11orf88-204ENST00000529661 TEN1Q86WV5 123 aa1.98□□□□□ -2.09
C11orf88-204ENST00000529661 LINC00471Q8N535 108 aa1.98□□□□□ -2.09
C11orf88-204ENST00000529661 LINC00301Q8NCQ3 95 aa1.98□□□□□ -2.09
C11orf88-204ENST00000529661 OR4X2Q8NGF9 303 aa1.98□□□□□ -2.09
C11orf88-204ENST00000529661 POP5Q969H6 163 aaKnown RBP1.98□□□□□ -2.09
C11orf88-204ENST00000529661 HLA-DRB4X5D2U9 266 aa1.98□□□□□ -2.09
C11orf88-204ENST00000529661 UHRF1BP1LA0JNW5 1464 aa1.98□□□□□ -2.09
C11orf88-204ENST00000529661 COL1A1P02452 1464 aaPredicted RBP1.98□□□□□ -2.09
C11orf88-204ENST00000529661 ARHGAP31Q2M1Z3 1444 aa1.98□□□□□ -2.09
C11orf88-204ENST00000529661 SYNJ1O43426 1573 aa1.98□□□□□ -2.09
C11orf88-204ENST00000529661 GLI3P10071 1580 aa1.98□□□□□ -2.09
C11orf88-204ENST00000529661 HELZP42694 1942 aaKnown RBP1.97□□□□□ -2.09
C11orf88-204ENST00000529661 COL4A2P08572 1712 aa1.97□□□□□ -2.09
C11orf88-204ENST00000529661 ZFHX2Q9C0A1 2572 aaPredicted RBP1.97□□□□□ -2.09
C11orf88-204ENST00000529661 TRAV27A0A087WT01 109 aa1.97□□□□□ -2.09
C11orf88-204ENST00000529661 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.97□□□□□ -2.09
C11orf88-204ENST00000529661 TRAV3A0A0B4J244 114 aa1.97□□□□□ -2.09
C11orf88-204ENST00000529661 GNG7O60262 68 aa1.97□□□□□ -2.09
C11orf88-204ENST00000529661 IGF2P01344 180 aa1.97□□□□□ -2.09
C11orf88-204ENST00000529661 SAA1P0DJI8 122 aaPredicted RBP1.97□□□□□ -2.09
C11orf88-204ENST00000529661 MGST1P10620 155 aaKnown RBP1.97□□□□□ -2.09
C11orf88-204ENST00000529661 NEDD8Q15843 81 aa1.97□□□□□ -2.09
C11orf88-204ENST00000529661 OR5D14Q8NGL3 314 aa1.97□□□□□ -2.09
C11orf88-204ENST00000529661 HYLS1Q96M11 299 aa1.97□□□□□ -2.09
C11orf88-204ENST00000529661 TMEM191AQ9H0A3 160 aa1.97□□□□□ -2.09
C11orf88-204ENST00000529661 MUC4Q99102 2169 aa1.97□□□□□ -2.09
C11orf88-204ENST00000529661 IBTKQ9P2D0 1353 aaPredicted RBP1.97□□□□□ -2.09
C11orf88-204ENST00000529661 CITO14578 2027 aa1.96□□□□□ -2.09
C11orf88-204ENST00000529661 CUL9Q8IWT3 2517 aa1.96□□□□□ -2.09
C11orf88-204ENST00000529661 MED12LQ86YW9 2145 aa1.96□□□□□ -2.1
C11orf88-204ENST00000529661 ZNF705FA8MVS1 300 aaPredicted RBP1.96□□□□□ -2.1
C11orf88-204ENST00000529661 FAM25AB3EWG3 89 aa1.96□□□□□ -2.1
C11orf88-204ENST00000529661 FAM25CB3EWG5 89 aa1.96□□□□□ -2.1
C11orf88-204ENST00000529661 FAM25GB3EWG6 89 aa1.96□□□□□ -2.1
C11orf88-204ENST00000529661 ZNF670-ZNF695F2Z2N8 137 aa1.96□□□□□ -2.1
C11orf88-204ENST00000529661 HIST1H1BP16401 226 aaKnown RBP1.96□□□□□ -2.1
C11orf88-204ENST00000529661 ASB16-AS1Q495Z4 193 aa1.96□□□□□ -2.1
C11orf88-204ENST00000529661 RPS19BP1Q86WX3 136 aaKnown RBP1.96□□□□□ -2.1
C11orf88-204ENST00000529661 Q8N814 137 aa1.96□□□□□ -2.1
C11orf88-204ENST00000529661 C9orf163Q8N9P6 203 aa1.96□□□□□ -2.1
C11orf88-204ENST00000529661 SLC50A1Q9BRV3 221 aa1.96□□□□□ -2.1
C11orf88-204ENST00000529661 TPRKBQ9Y3C4 175 aa1.96□□□□□ -2.1
C11orf88-204ENST00000529661 COL24A1Q17RW2 1714 aa1.96□□□□□ -2.1
C11orf88-204ENST00000529661 COL4A5P29400 1685 aa1.96□□□□□ -2.1
C11orf88-204ENST00000529661 WDR97A6NE52 1622 aa1.95□□□□□ -2.1
C11orf88-204ENST00000529661 SIPA1L2Q9P2F8 1722 aaPredicted RBP1.95□□□□□ -2.1
C11orf88-204ENST00000529661 ERBINQ96RT1 1412 aa1.95□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms