RNA–Protein interactions for RNA: ENST00000529661.1

C11orf88-204, Transcript of chromosome 11 open reading frame 88, humanhuman

TSL 3

Gene C11orf88, Length 624 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C11orf88-204ENST00000529661 AEBP2Q6ZN18 517 aaPredicted RBP26.17■■□□□ 1.78
C11orf88-204ENST00000529661 CHIC1Q5VXU3 224 aa25.17■■□□□ 1.62
C11orf88-204ENST00000529661 SENP3Q9H4L4 574 aaPredicted RBP22.19■■□□□ 1.14
C11orf88-204ENST00000529661 PHF23Q9BUL5 403 aaPredicted RBP22.13■■□□□ 1.13
C11orf88-204ENST00000529661 FOXD1Q16676 465 aa20.68■□□□□ 0.9
C11orf88-204ENST00000529661 PLPPR3Q6T4P5 718 aa20.24■□□□□ 0.83
C11orf88-204ENST00000529661 PPP6R1Q9UPN7 881 aa19.63■□□□□ 0.73
C11orf88-204ENST00000529661 ADRA2BP18089 450 aa19.58■□□□□ 0.72
C11orf88-204ENST00000529661 PIAS4Q8N2W9 510 aaPredicted RBP19.39■□□□□ 0.69
C11orf88-204ENST00000529661 MSH5O43196 834 aa19.15■□□□□ 0.66
C11orf88-204ENST00000529661 POTEDQ86YR6 584 aa18.1■□□□□ 0.49
C11orf88-204ENST00000529661 MAPK8IP2Q13387 824 aaPredicted RBP17.88■□□□□ 0.45
C11orf88-204ENST00000529661 SCAF1Q9H7N4 1312 aaKnown RBP17.82■□□□□ 0.44
C11orf88-204ENST00000529661 PPP4R3CPQ6ZMV5 832 aa17.82■□□□□ 0.44
C11orf88-204ENST00000529661 DMRT2Q9Y5R5 561 aa17.68■□□□□ 0.42
C11orf88-204ENST00000529661 CNKSR2Q8WXI2 1034 aa17.38■□□□□ 0.37
C11orf88-204ENST00000529661 NCBP3Q53F19 620 aaKnown RBP17.23■□□□□ 0.35
C11orf88-204ENST00000529661 KCNA4P22459 653 aa17.19■□□□□ 0.34
C11orf88-204ENST00000529661 HOXD11P31277 338 aaPredicted RBP17.17■□□□□ 0.34
C11orf88-204ENST00000529661 RNF216Q9NWF9 866 aaPredicted RBP17.13■□□□□ 0.33
C11orf88-204ENST00000529661 NPM3O75607 178 aaKnown RBP17.01■□□□□ 0.31
C11orf88-204ENST00000529661 DCAF8L1A6NGE4 600 aa16.89■□□□□ 0.29
C11orf88-204ENST00000529661 DNAJC5BQ9UF47 199 aa16.56■□□□□ 0.24
C11orf88-204ENST00000529661 RNF39Q9H2S5 420 aa16.41■□□□□ 0.22
C11orf88-204ENST00000529661 SLC4A1APQ9BWU0 796 aaKnown RBP16.36■□□□□ 0.21
C11orf88-204ENST00000529661 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.33■□□□□ 0.2
C11orf88-204ENST00000529661 CACNB1Q02641 598 aaPredicted RBP16.2■□□□□ 0.18
C11orf88-204ENST00000529661 SLC4A2P04920 1241 aa16.17■□□□□ 0.18
C11orf88-204ENST00000529661 C1QBPQ07021 282 aaKnown RBP16.15■□□□□ 0.18
C11orf88-204ENST00000529661 U3KPZ7 1027 aaPredicted RBP16.09■□□□□ 0.17
C11orf88-204ENST00000529661 FOXD4L1Q9NU39 408 aa15.85■□□□□ 0.13
C11orf88-204ENST00000529661 ZBTB22O15209 634 aa15.8■□□□□ 0.12
C11orf88-204ENST00000529661 EHMT2Q96KQ7 1210 aa15.8■□□□□ 0.12
C11orf88-204ENST00000529661 SPINK5Q9NQ38 1064 aaPredicted RBP15.74■□□□□ 0.11
C11orf88-204ENST00000529661 MYCNP04198 464 aaPredicted RBP15.71■□□□□ 0.11
C11orf88-204ENST00000529661 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.67■□□□□ 0.1
C11orf88-204ENST00000529661 HNRNPUL2Q1KMD3 747 aaKnown RBP15.67■□□□□ 0.1
C11orf88-204ENST00000529661 CAPN15O75808 1086 aa15.64■□□□□ 0.09
C11orf88-204ENST00000529661 SAMD1Q6SPF0 538 aaPredicted RBP15.62■□□□□ 0.09
C11orf88-204ENST00000529661 CSRNP3Q8WYN3 585 aa15.6■□□□□ 0.09
C11orf88-204ENST00000529661 APLP2Q06481 763 aa15.57■□□□□ 0.08
C11orf88-204ENST00000529661 TRHP20396 242 aaPredicted RBP15.5■□□□□ 0.07
C11orf88-204ENST00000529661 DSG3P32926 999 aa15.5■□□□□ 0.07
C11orf88-204ENST00000529661 ZNF219Q9P2Y4 722 aaPredicted RBP15.47■□□□□ 0.07
C11orf88-204ENST00000529661 ATF5Q9Y2D1 282 aaPredicted RBP15.37■□□□□ 0.05
C11orf88-204ENST00000529661 ABCB7O75027 752 aa15.36■□□□□ 0.05
C11orf88-204ENST00000529661 ATXN8OSP0DMR3 200 aa15.26■□□□□ 0.03
C11orf88-204ENST00000529661 POLA2Q14181 598 aa15.16■□□□□ 0.02
C11orf88-204ENST00000529661 ZBTB12Q9Y330 459 aaPredicted RBP14.85□□□□□ -0.03
C11orf88-204ENST00000529661 RBM42Q9BTD8 480 aaKnown RBP14.73□□□□□ -0.05
C11orf88-204ENST00000529661 OSCARQ8IYS5 282 aa14.7□□□□□ -0.06
C11orf88-204ENST00000529661 MKRN4PQ13434 485 aaPredicted RBP14.68□□□□□ -0.06
C11orf88-204ENST00000529661 FBLN2P98095 1184 aa14.67□□□□□ -0.06
C11orf88-204ENST00000529661 AKT1S1Q96B36 256 aa14.49□□□□□ -0.09
C11orf88-204ENST00000529661 SPDYE2BA6NHP3 402 aa14.45□□□□□ -0.1
C11orf88-204ENST00000529661 SPDYE6P0CI01 402 aa14.45□□□□□ -0.1
C11orf88-204ENST00000529661 SPDYE2Q495Y8 402 aa14.45□□□□□ -0.1
C11orf88-204ENST00000529661 REM2Q8IYK8 340 aaPredicted RBP14.37□□□□□ -0.11
C11orf88-204ENST00000529661 SSUH2Q9Y2M2 353 aa14.34□□□□□ -0.11
C11orf88-204ENST00000529661 ZNF692Q9BU19 519 aaPredicted RBP14.32□□□□□ -0.12
C11orf88-204ENST00000529661 CHRDL2Q6WN34 429 aa14.29□□□□□ -0.12
C11orf88-204ENST00000529661 SPDYE4A6NLX3 237 aa14.24□□□□□ -0.13
C11orf88-204ENST00000529661 POTEHQ6S545 545 aa14.24□□□□□ -0.13
C11orf88-204ENST00000529661 PITPNM1O00562 1244 aa14.23□□□□□ -0.13
C11orf88-204ENST00000529661 FKBP8Q14318 412 aa14.16□□□□□ -0.14
C11orf88-204ENST00000529661 PABPN1Q86U42 306 aaKnown RBP eCLIP14.15□□□□□ -0.14
C11orf88-204ENST00000529661 SPDYE1Q8NFV5 336 aaPredicted RBP14.1□□□□□ -0.15
C11orf88-204ENST00000529661 PIP4P2Q8N4L2 257 aa14.05□□□□□ -0.16
C11orf88-204ENST00000529661 CLEC11AQ9Y240 323 aa14.05□□□□□ -0.16
C11orf88-204ENST00000529661 FXR2P51116 673 aaKnown RBP eCLIP14.02□□□□□ -0.17
C11orf88-204ENST00000529661 PROM2Q8N271 834 aa13.91□□□□□ -0.18
C11orf88-204ENST00000529661 PRR29P0C7W0 189 aa13.86□□□□□ -0.19
C11orf88-204ENST00000529661 PRKAR2AP13861 404 aaKnown RBP13.84□□□□□ -0.19
C11orf88-204ENST00000529661 STAG3Q9UJ98 1225 aa13.81□□□□□ -0.2
C11orf88-204ENST00000529661 CHADLQ6NUI6 762 aa13.79□□□□□ -0.2
C11orf88-204ENST00000529661 CREBZFQ9NS37 354 aa13.67□□□□□ -0.22
C11orf88-204ENST00000529661 FBXO3Q9UK99 471 aa13.65□□□□□ -0.22
C11orf88-204ENST00000529661 HAX1O00165 279 aa13.64□□□□□ -0.23
C11orf88-204ENST00000529661 FARP1Q9Y4F1 1045 aaPredicted RBP13.6□□□□□ -0.23
C11orf88-204ENST00000529661 EVX2Q03828 476 aa13.57□□□□□ -0.24
C11orf88-204ENST00000529661 C19orf67A6NJJ6 358 aa13.56□□□□□ -0.24
C11orf88-204ENST00000529661 MIER1Q8N108 512 aa13.54□□□□□ -0.24
C11orf88-204ENST00000529661 PLCD3Q8N3E9 789 aa13.52□□□□□ -0.25
C11orf88-204ENST00000529661 SP7Q8TDD2 431 aaPredicted RBP13.52□□□□□ -0.25
C11orf88-204ENST00000529661 MNX1P50219 401 aaPredicted RBP13.5□□□□□ -0.25
C11orf88-204ENST00000529661 VASPP50552 380 aaPredicted RBP13.49□□□□□ -0.25
C11orf88-204ENST00000529661 PLEKHG5O94827 1062 aa13.48□□□□□ -0.25
C11orf88-204ENST00000529661 CD44P16070 742 aaKnown RBP13.43□□□□□ -0.26
C11orf88-204ENST00000529661 NPM1P06748 294 aaKnown RBP eCLIP13.36□□□□□ -0.27
C11orf88-204ENST00000529661 KLHL34Q8N239 644 aa13.33□□□□□ -0.28
C11orf88-204ENST00000529661 ZBTB47Q9UFB7 747 aaPredicted RBP13.33□□□□□ -0.28
C11orf88-204ENST00000529661 ZRANB1Q9UGI0 708 aa13.29□□□□□ -0.28
C11orf88-204ENST00000529661 IFNLR1Q8IU57 520 aaPredicted RBP13.28□□□□□ -0.28
C11orf88-204ENST00000529661 GABBR2O75899 941 aa13.25□□□□□ -0.29
C11orf88-204ENST00000529661 ZNF579Q8NAF0 562 aaKnown RBP13.25□□□□□ -0.29
C11orf88-204ENST00000529661 PAK3O75914 559 aaPredicted RBP13.22□□□□□ -0.29
C11orf88-204ENST00000529661 RASEFQ8IZ41 740 aa13.19□□□□□ -0.3
C11orf88-204ENST00000529661 PHF12Q96QT6 1004 aa13.18□□□□□ -0.3
C11orf88-204ENST00000529661 TSPYL2Q9H2G4 693 aaPredicted RBP13.17□□□□□ -0.3
C11orf88-204ENST00000529661 NUBP1P53384 320 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms