RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 GAGE2DQ9UEU5 116 aa16.77■□□□□ 0.27
SDF4-206ENST00000478938 TRAV4A0A0B4J268 109 aa16.76■□□□□ 0.27
SDF4-206ENST00000478938 TGFAP01135 160 aa16.76■□□□□ 0.27
SDF4-206ENST00000478938 HOXB4P17483 251 aaPredicted RBP16.76■□□□□ 0.27
SDF4-206ENST00000478938 C17orf58Q2M2W7 97 aa16.76■□□□□ 0.27
SDF4-206ENST00000478938 FBXL15Q9H469 300 aa16.76■□□□□ 0.27
SDF4-206ENST00000478938 SSUH2Q9Y2M2 353 aa16.76■□□□□ 0.27
SDF4-206ENST00000478938 IGHV3-21A0A0B4J1V1 117 aa16.76■□□□□ 0.27
SDF4-206ENST00000478938 H3BVH4 76 aa16.76■□□□□ 0.27
SDF4-206ENST00000478938 SCGB2A1O75556 95 aa16.76■□□□□ 0.27
SDF4-206ENST00000478938 THBDP07204 575 aa16.76■□□□□ 0.27
SDF4-206ENST00000478938 ANKRD29Q8N6D5 301 aa16.76■□□□□ 0.27
SDF4-206ENST00000478938 C8orf49Q96NF6 230 aa16.76■□□□□ 0.27
SDF4-206ENST00000478938 YAE1D1Q9NRH1 226 aa16.76■□□□□ 0.27
SDF4-206ENST00000478938 CRLF1O75462 422 aa16.75■□□□□ 0.27
SDF4-206ENST00000478938 GUSBP11Q6P575 273 aa16.75■□□□□ 0.27
SDF4-206ENST00000478938 FAM159AQ6UWV7 190 aa16.75■□□□□ 0.27
SDF4-206ENST00000478938 C1orf210Q8IVY1 113 aa16.75■□□□□ 0.27
SDF4-206ENST00000478938 PLXNB1O43157 2135 aa16.75■□□□□ 0.27
SDF4-206ENST00000478938 PPP1R35Q8TAP8 253 aa16.75■□□□□ 0.27
SDF4-206ENST00000478938 PEAR1Q5VY43 1037 aaPredicted RBP16.74■□□□□ 0.27
SDF4-206ENST00000478938 RPEQ96AT9 228 aa16.74■□□□□ 0.27
SDF4-206ENST00000478938 ABCA1O95477 2261 aa16.74■□□□□ 0.27
SDF4-206ENST00000478938 CGB1A6NKQ9 187 aa16.74■□□□□ 0.27
SDF4-206ENST00000478938 MAP1LC3AQ9H492 121 aa16.74■□□□□ 0.27
SDF4-206ENST00000478938 NDUFA3O95167 84 aa16.73■□□□□ 0.27
SDF4-206ENST00000478938 VCX2Q9H322 139 aa16.73■□□□□ 0.27
SDF4-206ENST00000478938 ZNF71Q9NQZ8 489 aaPredicted RBP16.73■□□□□ 0.27
SDF4-206ENST00000478938 TIMM8AO60220 97 aaPredicted RBP16.73■□□□□ 0.27
SDF4-206ENST00000478938 IFITM1P13164 125 aa16.72■□□□□ 0.27
SDF4-206ENST00000478938 TTC32Q5I0X7 151 aa16.72■□□□□ 0.27
SDF4-206ENST00000478938 C17orf77Q96MU5 243 aa16.72■□□□□ 0.27
SDF4-206ENST00000478938 PPDPFQ9H3Y8 114 aa16.72■□□□□ 0.27
SDF4-206ENST00000478938 VPREB3Q9UKI3 123 aa16.72■□□□□ 0.27
SDF4-206ENST00000478938 NCBP2LA6PVI3 153 aaKnown RBP16.72■□□□□ 0.27
SDF4-206ENST00000478938 ATP5LO75964 103 aa16.72■□□□□ 0.27
SDF4-206ENST00000478938 Q0VFX4 171 aa16.72■□□□□ 0.27
SDF4-206ENST00000478938 SPINK14Q6IE38 97 aa16.72■□□□□ 0.27
SDF4-206ENST00000478938 URB1O60287 2271 aaKnown RBP16.71■□□□□ 0.27
SDF4-206ENST00000478938 A8MWV9 139 aa16.71■□□□□ 0.26
SDF4-206ENST00000478938 SNCGO76070 127 aa16.71■□□□□ 0.26
SDF4-206ENST00000478938 TCL1BO95988 128 aa16.71■□□□□ 0.26
SDF4-206ENST00000478938 TMEM262E9PQX1 116 aa16.7■□□□□ 0.26
SDF4-206ENST00000478938 CENPVL3A0A0U1RRI6 287 aa16.7■□□□□ 0.26
SDF4-206ENST00000478938 MYMXA0A1B0GTQ4 84 aa16.7■□□□□ 0.26
SDF4-206ENST00000478938 CGB3P0DN86 165 aa16.7■□□□□ 0.26
SDF4-206ENST00000478938 CGB7P0DN87 165 aa16.7■□□□□ 0.26
SDF4-206ENST00000478938 TMEM75Q8N9X5 138 aa16.7■□□□□ 0.26
SDF4-206ENST00000478938 SPRY4Q9C004 299 aa16.7■□□□□ 0.26
SDF4-206ENST00000478938 GATA1P15976 413 aaPredicted RBP16.69■□□□□ 0.26
SDF4-206ENST00000478938 UBE2D3P61077 147 aa16.69■□□□□ 0.26
SDF4-206ENST00000478938 UBE2D2P62837 147 aa16.69■□□□□ 0.26
SDF4-206ENST00000478938 HCP5Q6MZN7 132 aa16.69■□□□□ 0.26
SDF4-206ENST00000478938 PROCRQ9UNN8 238 aa16.69■□□□□ 0.26
SDF4-206ENST00000478938 LYZP61626 148 aa16.69■□□□□ 0.26
SDF4-206ENST00000478938 MSRB1Q9NZV6 116 aa16.69■□□□□ 0.26
SDF4-206ENST00000478938 TRBV6-1A0A0K0K1D8 114 aa16.68■□□□□ 0.26
SDF4-206ENST00000478938 DUX4L9Q6RFH8 374 aaPredicted RBP16.68■□□□□ 0.26
SDF4-206ENST00000478938 Q6ZQT7 251 aa16.68■□□□□ 0.26
SDF4-206ENST00000478938 C3orf56Q8N813 242 aa16.68■□□□□ 0.26
SDF4-206ENST00000478938 HES7Q9BYE0 225 aa16.68■□□□□ 0.26
SDF4-206ENST00000478938 CFAP47Q6ZTR5 3102 aa16.68■□□□□ 0.26
SDF4-206ENST00000478938 HIGD1AQ9Y241 93 aa16.68■□□□□ 0.26
SDF4-206ENST00000478938 M0QXV9 152 aa16.67■□□□□ 0.26
SDF4-206ENST00000478938 APELAP0DMC3 54 aa16.67■□□□□ 0.26
SDF4-206ENST00000478938 SUB1P53999 127 aaKnown RBP eCLIP16.67■□□□□ 0.26
SDF4-206ENST00000478938 MRPL20Q9BYC9 149 aaKnown RBP16.67■□□□□ 0.26
SDF4-206ENST00000478938 PPP1R27Q86WC6 154 aa16.67■□□□□ 0.26
SDF4-206ENST00000478938 RNF185Q96GF1 192 aa16.67■□□□□ 0.26
SDF4-206ENST00000478938 SLC25A39Q9BZJ4 359 aaPredicted RBP16.67■□□□□ 0.26
SDF4-206ENST00000478938 RPUSD1Q9UJJ7 312 aaKnown RBP16.67■□□□□ 0.26
SDF4-206ENST00000478938 TRAV8-2A0A0B4J237 113 aa16.66■□□□□ 0.26
SDF4-206ENST00000478938 J3KRW8 73 aa16.66■□□□□ 0.26
SDF4-206ENST00000478938 SH2D1AO60880 128 aa16.66■□□□□ 0.26
SDF4-206ENST00000478938 TNFRSF6BO95407 300 aa16.66■□□□□ 0.26
SDF4-206ENST00000478938 ATP5J2P56134 94 aa16.66■□□□□ 0.26
SDF4-206ENST00000478938 TRGV9Q99603 122 aa16.66■□□□□ 0.26
SDF4-206ENST00000478938 RAB9BQ9NP90 201 aa16.66■□□□□ 0.26
SDF4-206ENST00000478938 LINC01546A6NGU7 62 aa16.66■□□□□ 0.26
SDF4-206ENST00000478938 M0R3E3 92 aa16.66■□□□□ 0.26
SDF4-206ENST00000478938 LGALS1P09382 135 aaKnown RBP16.66■□□□□ 0.26
SDF4-206ENST00000478938 MEIG1Q5JSS6 88 aa16.66■□□□□ 0.26
SDF4-206ENST00000478938 PIP4P1Q86T03 277 aa16.66■□□□□ 0.26
SDF4-206ENST00000478938 FAM201AQ5SY85 155 aa16.65■□□□□ 0.26
SDF4-206ENST00000478938 SBSPONQ8IVN8 264 aa16.65■□□□□ 0.26
SDF4-206ENST00000478938 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.65■□□□□ 0.26
SDF4-206ENST00000478938 LYZL6O75951 148 aa16.65■□□□□ 0.26
SDF4-206ENST00000478938 LINC01619G3V211 115 aa16.64■□□□□ 0.25
SDF4-206ENST00000478938 NXT2Q9NPJ8 142 aaKnown RBP16.64■□□□□ 0.25
SDF4-206ENST00000478938 SRRM5B3KS81 715 aa16.64■□□□□ 0.25
SDF4-206ENST00000478938 FCN3O75636 299 aa16.64■□□□□ 0.25
SDF4-206ENST00000478938 UBE2D1P51668 147 aa16.64■□□□□ 0.25
SDF4-206ENST00000478938 RASL11BQ9BPW5 248 aa16.64■□□□□ 0.25
SDF4-206ENST00000478938 DSCAML1Q8TD84 2053 aa16.64■□□□□ 0.25
SDF4-206ENST00000478938 A0A1W2PPI3 338 aa16.63■□□□□ 0.25
SDF4-206ENST00000478938 INS-IGF2F8WCM5 200 aa16.63■□□□□ 0.25
SDF4-206ENST00000478938 SPRNQ5BIV9 151 aa16.63■□□□□ 0.25
SDF4-206ENST00000478938 ZNF576Q9H609 170 aa16.63■□□□□ 0.25
SDF4-206ENST00000478938 CTSZQ9UBR2 303 aa16.63■□□□□ 0.25
SDF4-206ENST00000478938 PRRC2CQ9Y520 2896 aaKnown RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms