RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 HLA-DMBP28068 263 aa7.16□□□□□ -1.26
SYNE1-224ENST00000478916 Q8TAT8 98 aa7.16□□□□□ -1.26
SYNE1-224ENST00000478916 TRAV13-2A0A0B4J235 113 aa7.16□□□□□ -1.26
SYNE1-224ENST00000478916 CLPSP04118 112 aa7.16□□□□□ -1.26
SYNE1-224ENST00000478916 EGR2P11161 476 aaPredicted RBP7.16□□□□□ -1.26
SYNE1-224ENST00000478916 LYL1P12980 280 aa7.16□□□□□ -1.26
SYNE1-224ENST00000478916 KLRD1Q13241 179 aa7.16□□□□□ -1.26
SYNE1-224ENST00000478916 C18orf32Q8TCD1 76 aa7.16□□□□□ -1.26
SYNE1-224ENST00000478916 USMG5Q96IX5 58 aa7.16□□□□□ -1.26
SYNE1-224ENST00000478916 RTTNQ86VV8 2226 aa7.16□□□□□ -1.26
SYNE1-224ENST00000478916 FNDC10F2Z333 226 aa7.16□□□□□ -1.26
SYNE1-224ENST00000478916 GFI1Q99684 422 aa7.16□□□□□ -1.26
SYNE1-224ENST00000478916 ADCYAP1P18509 176 aa7.16□□□□□ -1.26
SYNE1-224ENST00000478916 TP53TG1Q9Y2A0 90 aa7.16□□□□□ -1.26
SYNE1-224ENST00000478916 H3BMG7 143 aa7.16□□□□□ -1.26
SYNE1-224ENST00000478916 FER1L5A0AVI2 2057 aa7.16□□□□□ -1.26
SYNE1-224ENST00000478916 FAM223BA6NKX1 122 aa7.16□□□□□ -1.26
SYNE1-224ENST00000478916 CRLF1O75462 422 aa7.16□□□□□ -1.26
SYNE1-224ENST00000478916 IGHV3-53P01767 116 aa7.16□□□□□ -1.26
SYNE1-224ENST00000478916 MST1P26927 711 aa7.16□□□□□ -1.26
SYNE1-224ENST00000478916 NBL1P41271 181 aa7.16□□□□□ -1.26
SYNE1-224ENST00000478916 FOXG1P55316 489 aaPredicted RBP7.16□□□□□ -1.26
SYNE1-224ENST00000478916 LGALS9BQ3B8N2 356 aa7.16□□□□□ -1.26
SYNE1-224ENST00000478916 LGALS9CQ6DKI2 356 aa7.16□□□□□ -1.26
SYNE1-224ENST00000478916 BRD3OSQ6XYD6 125 aa7.16□□□□□ -1.26
SYNE1-224ENST00000478916 FAM223AQ8IWN6 122 aa7.16□□□□□ -1.26
SYNE1-224ENST00000478916 A0A087WWL8 130 aa7.15□□□□□ -1.26
SYNE1-224ENST00000478916 hADV29S1A0JD25 119 aa7.15□□□□□ -1.26
SYNE1-224ENST00000478916 GAS1P54826 345 aa7.15□□□□□ -1.26
SYNE1-224ENST00000478916 PRSS57Q6UWY2 283 aa7.15□□□□□ -1.26
SYNE1-224ENST00000478916 Q8N8P6 123 aa7.15□□□□□ -1.26
SYNE1-224ENST00000478916 RFNGQ9Y644 331 aa7.15□□□□□ -1.26
SYNE1-224ENST00000478916 NTF4P34130 210 aa7.15□□□□□ -1.26
SYNE1-224ENST00000478916 Q86TA4 180 aa7.15□□□□□ -1.26
SYNE1-224ENST00000478916 LINC00527Q9UJ94 153 aa7.15□□□□□ -1.26
SYNE1-224ENST00000478916 SIVA1O15304 175 aa7.15□□□□□ -1.26
SYNE1-224ENST00000478916 HAPLN4Q86UW8 402 aa7.15□□□□□ -1.26
SYNE1-224ENST00000478916 ALPK2Q86TB3 2170 aa7.15□□□□□ -1.27
SYNE1-224ENST00000478916 CEACAM8P31997 349 aaPredicted RBP7.15□□□□□ -1.27
SYNE1-224ENST00000478916 TMEM75Q8N9X5 138 aa7.15□□□□□ -1.27
SYNE1-224ENST00000478916 GAFA1Q96PS6 74 aa7.15□□□□□ -1.27
SYNE1-224ENST00000478916 BUB1B-PAK6H3BSN5 160 aa7.15□□□□□ -1.27
SYNE1-224ENST00000478916 KLHL30-AS1Q8NEE0 82 aa7.15□□□□□ -1.27
SYNE1-224ENST00000478916 BPESC1Q9GZL8 116 aa7.15□□□□□ -1.27
SYNE1-224ENST00000478916 CACNA1IQ9P0X4 2223 aa7.15□□□□□ -1.27
SYNE1-224ENST00000478916 ACYP1P07311 99 aa7.14□□□□□ -1.27
SYNE1-224ENST00000478916 ARMS2P0C7Q2 107 aa7.14□□□□□ -1.27
SYNE1-224ENST00000478916 CD177Q8N6Q3 437 aa7.14□□□□□ -1.27
SYNE1-224ENST00000478916 ZNF492Q9P255 531 aa7.14□□□□□ -1.27
SYNE1-224ENST00000478916 PRSS46E5RG02 174 aa7.14□□□□□ -1.27
SYNE1-224ENST00000478916 NKAPP1Q8N9T2 125 aa7.14□□□□□ -1.27
SYNE1-224ENST00000478916 SCRT2Q9NQ03 307 aa7.14□□□□□ -1.27
SYNE1-224ENST00000478916 B3GALT5-AS1P59052 145 aa7.14□□□□□ -1.27
SYNE1-224ENST00000478916 C5orf64Q2M2E5 130 aa7.14□□□□□ -1.27
SYNE1-224ENST00000478916 SMIM20Q8N5G0 67 aa7.14□□□□□ -1.27
SYNE1-224ENST00000478916 ZSWIM8A7E2V4 1837 aa7.14□□□□□ -1.27
SYNE1-224ENST00000478916 IGFL3Q6UXB1 125 aa7.14□□□□□ -1.27
SYNE1-224ENST00000478916 KIAA2026Q5HYC2 2103 aa7.14□□□□□ -1.27
SYNE1-224ENST00000478916 J3KT08 172 aa7.14□□□□□ -1.27
SYNE1-224ENST00000478916 SHISA9B4DS77 424 aa7.14□□□□□ -1.27
SYNE1-224ENST00000478916 IGKV1-5P01602 117 aa7.14□□□□□ -1.27
SYNE1-224ENST00000478916 PDE6HQ13956 83 aa7.14□□□□□ -1.27
SYNE1-224ENST00000478916 CACNA1EQ15878 2313 aa7.14□□□□□ -1.27
SYNE1-224ENST00000478916 I3L3M4 83 aa7.14□□□□□ -1.27
SYNE1-224ENST00000478916 MSMBP08118 114 aa7.14□□□□□ -1.27
SYNE1-224ENST00000478916 CFHR2P36980 270 aa7.14□□□□□ -1.27
SYNE1-224ENST00000478916 Q6ZWC4 215 aa7.14□□□□□ -1.27
SYNE1-224ENST00000478916 PIP4P2Q8N4L2 257 aa7.14□□□□□ -1.27
SYNE1-224ENST00000478916 RNF223E7ERA6 249 aa7.13□□□□□ -1.27
SYNE1-224ENST00000478916 NACAE9PAV3 2078 aa7.13□□□□□ -1.27
SYNE1-224ENST00000478916 ZNF561-AS1K7EIQ3 104 aa7.13□□□□□ -1.27
SYNE1-224ENST00000478916 IGLL1P15814 213 aa7.13□□□□□ -1.27
SYNE1-224ENST00000478916 C2orf66Q6UXQ4 117 aa7.13□□□□□ -1.27
SYNE1-224ENST00000478916 PFN2P35080 140 aa7.13□□□□□ -1.27
SYNE1-224ENST00000478916 TMEM243Q9BU79 118 aa7.13□□□□□ -1.27
SYNE1-224ENST00000478916 IGKV1-12A0A0C4DH73 117 aa7.13□□□□□ -1.27
SYNE1-224ENST00000478916 TINCRA0A1B0GVN0 87 aa7.13□□□□□ -1.27
SYNE1-224ENST00000478916 IGKV1D-12P01611 117 aa7.13□□□□□ -1.27
SYNE1-224ENST00000478916 IGHG2P01859 326 aa7.13□□□□□ -1.27
SYNE1-224ENST00000478916 C10orf55Q5SWW7 151 aa7.13□□□□□ -1.27
SYNE1-224ENST00000478916 FAM104BQ5XKR9 115 aa7.13□□□□□ -1.27
SYNE1-224ENST00000478916 SRSF8Q9BRL6 282 aaKnown RBP7.13□□□□□ -1.27
SYNE1-224ENST00000478916 A0A1B0GUS0 222 aa7.13□□□□□ -1.27
SYNE1-224ENST00000478916 H0YJW9 148 aa7.13□□□□□ -1.27
SYNE1-224ENST00000478916 COL8A2P25067 703 aa7.12□□□□□ -1.27
SYNE1-224ENST00000478916 NDPQ00604 133 aa7.12□□□□□ -1.27
SYNE1-224ENST00000478916 PLA2G2CQ5R387 149 aa7.12□□□□□ -1.27
SYNE1-224ENST00000478916 PFN1P07737 140 aaKnown RBP7.12□□□□□ -1.27
SYNE1-224ENST00000478916 NDUFS5O43920 106 aa7.12□□□□□ -1.27
SYNE1-224ENST00000478916 HLA-DRB4P13762 266 aa7.12□□□□□ -1.27
SYNE1-224ENST00000478916 HLA-DRB4X5D2U9 266 aa7.12□□□□□ -1.27
SYNE1-224ENST00000478916 A0A087WV48 116 aa7.12□□□□□ -1.27
SYNE1-224ENST00000478916 KNCNA6PVL3 124 aa7.12□□□□□ -1.27
SYNE1-224ENST00000478916 C15orf62A8K5M9 175 aa7.12□□□□□ -1.27
SYNE1-224ENST00000478916 E7EQL1 145 aa7.12□□□□□ -1.27
SYNE1-224ENST00000478916 IL17RELQ6ZVW7 336 aa7.12□□□□□ -1.27
SYNE1-224ENST00000478916 SVIPQ8NHG7 77 aa7.12□□□□□ -1.27
SYNE1-224ENST00000478916 K7ERJ3 54 aa7.12□□□□□ -1.27
SYNE1-224ENST00000478916 PRR30Q53SZ7 412 aaPredicted RBP7.12□□□□□ -1.27
SYNE1-224ENST00000478916 TRAV3A0A0B4J244 114 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms